RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 C2orf92A0A1B0GVN3 265 aa4.79□□□□□ -1.64
USP28-213ENST00000544967 TTLL8A6PVC2 850 aa4.79□□□□□ -1.64
USP28-213ENST00000544967 TNFRSF10CO14798 259 aa4.79□□□□□ -1.64
USP28-213ENST00000544967 SOX14O95416 240 aa4.79□□□□□ -1.64
USP28-213ENST00000544967 ALPPL2P10696 532 aa4.79□□□□□ -1.64
USP28-213ENST00000544967 RNH1P13489 461 aaKnown RBP4.79□□□□□ -1.64
USP28-213ENST00000544967 ZNF44P15621 663 aa4.79□□□□□ -1.64
USP28-213ENST00000544967 TNFRSF1BP20333 461 aa4.79□□□□□ -1.64
USP28-213ENST00000544967 BCKDHBP21953 392 aa4.79□□□□□ -1.64
USP28-213ENST00000544967 ITGA3P26006 1051 aa4.79□□□□□ -1.64
USP28-213ENST00000544967 SHC1P29353 583 aa4.79□□□□□ -1.64
USP28-213ENST00000544967 BDKRB2P30411 391 aa4.79□□□□□ -1.64
USP28-213ENST00000544967 FEN1P39748 380 aaKnown RBP4.79□□□□□ -1.64
USP28-213ENST00000544967 RHOAP61586 193 aa4.79□□□□□ -1.64
USP28-213ENST00000544967 POLR2LP62875 67 aaKnown RBP4.79□□□□□ -1.64
USP28-213ENST00000544967 HSD11B2P80365 405 aa4.79□□□□□ -1.64
USP28-213ENST00000544967 PRR5P85299 388 aa4.79□□□□□ -1.64
USP28-213ENST00000544967 LINC00303Q3SY05 128 aa4.79□□□□□ -1.64
USP28-213ENST00000544967 C11orf87Q6NUJ2 197 aa4.79□□□□□ -1.64
USP28-213ENST00000544967 FAHD2BQ6P2I3 314 aaPredicted RBP4.79□□□□□ -1.64
USP28-213ENST00000544967 FAM199XQ6PEV8 388 aaPredicted RBP4.79□□□□□ -1.64
USP28-213ENST00000544967 HIST2H3AQ71DI3 136 aa4.79□□□□□ -1.64
USP28-213ENST00000544967 PIP4P1Q86T03 277 aa4.79□□□□□ -1.64
USP28-213ENST00000544967 ZNF227Q86WZ6 799 aa4.79□□□□□ -1.64
USP28-213ENST00000544967 FAM160A2Q8N612 972 aaPredicted RBP4.79□□□□□ -1.64
USP28-213ENST00000544967 BMPERQ8N8U9 685 aa4.79□□□□□ -1.64
USP28-213ENST00000544967 PNPLA1Q8N8W4 532 aa4.79□□□□□ -1.64
USP28-213ENST00000544967 PNLDC1Q8NA58 520 aaKnown RBP4.79□□□□□ -1.64
USP28-213ENST00000544967 OR5M8Q8NGP6 311 aa4.79□□□□□ -1.64
USP28-213ENST00000544967 AKR7LQ8NHP1 331 aa4.79□□□□□ -1.64
USP28-213ENST00000544967 THRSPQ92748 146 aa4.79□□□□□ -1.64
USP28-213ENST00000544967 HIST1H2BAQ96A08 127 aa4.79□□□□□ -1.64
USP28-213ENST00000544967 PPCDCQ96CD2 204 aa4.79□□□□□ -1.64
USP28-213ENST00000544967 EID2BQ96D98 161 aa4.79□□□□□ -1.64
USP28-213ENST00000544967 DTD2Q96FN9 168 aa4.79□□□□□ -1.64
USP28-213ENST00000544967 FAHD2AQ96GK7 314 aa4.79□□□□□ -1.64
USP28-213ENST00000544967 TIMP4Q99727 224 aa4.79□□□□□ -1.64
USP28-213ENST00000544967 CITED2Q99967 270 aaPredicted RBP4.79□□□□□ -1.64
USP28-213ENST00000544967 NRIP2Q9BQI9 281 aa4.79□□□□□ -1.64
USP28-213ENST00000544967 ALG8Q9BVK2 526 aa4.79□□□□□ -1.64
USP28-213ENST00000544967 FNDC11Q9BVV2 318 aa4.79□□□□□ -1.64
USP28-213ENST00000544967 FXYD6Q9H0Q3 95 aa4.79□□□□□ -1.64
USP28-213ENST00000544967 TSPAN10Q9H1Z9 355 aaPredicted RBP4.79□□□□□ -1.64
USP28-213ENST00000544967 SLC26A1Q9H2B4 701 aa4.79□□□□□ -1.64
USP28-213ENST00000544967 TMEM27Q9HBJ8 222 aa4.79□□□□□ -1.64
USP28-213ENST00000544967 SLAMF7Q9NQ25 335 aa4.79□□□□□ -1.64
USP28-213ENST00000544967 C19orf12Q9NSK7 152 aa4.79□□□□□ -1.64
USP28-213ENST00000544967 ARL15Q9NXU5 204 aa4.79□□□□□ -1.64
USP28-213ENST00000544967 TAS2R10Q9NYW0 307 aa4.79□□□□□ -1.64
USP28-213ENST00000544967 TMED3Q9Y3Q3 217 aa4.79□□□□□ -1.64
USP28-213ENST00000544967 ELOA3CA0A087WX78 387 aaPredicted RBP4.79□□□□□ -1.64
USP28-213ENST00000544967 H7C417 338 aa4.79□□□□□ -1.64
USP28-213ENST00000544967 SMAD9O15198 467 aaKnown RBP4.79□□□□□ -1.64
USP28-213ENST00000544967 MAGEB4O15481 346 aaPredicted RBP4.79□□□□□ -1.64
USP28-213ENST00000544967 TGOLN2O43493 480 aa4.79□□□□□ -1.64
USP28-213ENST00000544967 SEMA4FO95754 770 aa4.79□□□□□ -1.64
USP28-213ENST00000544967 CSTAP01040 98 aa4.79□□□□□ -1.64
USP28-213ENST00000544967 C1QCP02747 245 aa4.79□□□□□ -1.64
USP28-213ENST00000544967 LIPFP07098 398 aa4.79□□□□□ -1.64
USP28-213ENST00000544967 CHRM5P08912 532 aaPredicted RBP4.79□□□□□ -1.64
USP28-213ENST00000544967 HOXB5P09067 269 aa4.79□□□□□ -1.64
USP28-213ENST00000544967 ZNF35P13682 527 aa4.79□□□□□ -1.64
USP28-213ENST00000544967 TPT1P13693 172 aaKnown RBP4.79□□□□□ -1.64
USP28-213ENST00000544967 HIST1H1BP16401 226 aaKnown RBP4.79□□□□□ -1.64
USP28-213ENST00000544967 ATF1P18846 271 aa4.79□□□□□ -1.64
USP28-213ENST00000544967 HOXA5P20719 270 aa4.79□□□□□ -1.64
USP28-213ENST00000544967 GDF5P43026 501 aa4.79□□□□□ -1.64
USP28-213ENST00000544967 GLP1RP43220 463 aa4.79□□□□□ -1.64
USP28-213ENST00000544967 PNLIPRP2P54317 469 aa4.79□□□□□ -1.64
USP28-213ENST00000544967 PKIAP61925 76 aa4.79□□□□□ -1.64
USP28-213ENST00000544967 SHBQ15464 509 aa4.79□□□□□ -1.64
USP28-213ENST00000544967 SLC5A12Q1EHB4 618 aa4.79□□□□□ -1.64
USP28-213ENST00000544967 ACER2Q5QJU3 275 aa4.79□□□□□ -1.64
USP28-213ENST00000544967 THEM4Q5T1C6 240 aa4.79□□□□□ -1.64
USP28-213ENST00000544967 NIPAL3Q6P499 406 aa4.79□□□□□ -1.64
USP28-213ENST00000544967 ENPP7Q6UWV6 458 aa4.79□□□□□ -1.64
USP28-213ENST00000544967 APOOLQ6UXV4 268 aa4.79□□□□□ -1.64
USP28-213ENST00000544967 MEPCEQ7L2J0 689 aaKnown RBP4.79□□□□□ -1.64
USP28-213ENST00000544967 CBLN2Q8IUK8 224 aa4.79□□□□□ -1.64
USP28-213ENST00000544967 EXOSC8Q96B26 276 aaKnown RBP4.79□□□□□ -1.64
USP28-213ENST00000544967 SLC25A36Q96CQ1 311 aa4.79□□□□□ -1.64
USP28-213ENST00000544967 RAB3CQ96E17 227 aa4.79□□□□□ -1.64
USP28-213ENST00000544967 PFDN5Q99471 154 aa4.79□□□□□ -1.64
USP28-213ENST00000544967 S100A13Q99584 98 aa4.79□□□□□ -1.64
USP28-213ENST00000544967 CHIAQ9BZP6 476 aa4.79□□□□□ -1.64
USP28-213ENST00000544967 TOLLIPQ9H0E2 274 aa4.79□□□□□ -1.64
USP28-213ENST00000544967 ABCG8Q9H221 673 aa4.79□□□□□ -1.64
USP28-213ENST00000544967 KLHL31Q9H511 634 aa4.79□□□□□ -1.64
USP28-213ENST00000544967 PARPBPQ9NWS1 579 aa4.79□□□□□ -1.64
USP28-213ENST00000544967 GFOD1Q9NXC2 390 aa4.79□□□□□ -1.64
USP28-213ENST00000544967 MTFP1Q9UDX5 166 aa4.79□□□□□ -1.64
USP28-213ENST00000544967 CACNA1IQ9P0X4 2223 aa4.79□□□□□ -1.64
USP28-213ENST00000544967 PRAMEF26H0Y7S4 382 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 EMC8O43402 210 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 B3GALT2O43825 422 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 OR2T1O43869 369 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 CTNSO60931 367 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 PRKRAO75569 313 aaKnown RBP4.78□□□□□ -1.64
USP28-213ENST00000544967 SPDEFO95238 335 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 C6orf47O95873 294 aa4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms