RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 ZNF503-AS2A6NEH8 195 aa6.08□□□□□ -1.44
VPS41-208ENST00000448833 MCIDASD6RGH6 385 aa6.08□□□□□ -1.44
VPS41-208ENST00000448833 M0R3H8 397 aa6.08□□□□□ -1.44
VPS41-208ENST00000448833 EDF1O60869 148 aaKnown RBP6.08□□□□□ -1.44
VPS41-208ENST00000448833 SEC14L2O76054 403 aa6.08□□□□□ -1.44
VPS41-208ENST00000448833 OR5F1O95221 314 aa6.08□□□□□ -1.44
VPS41-208ENST00000448833 PGA4P0DJD7 388 aa6.08□□□□□ -1.44
VPS41-208ENST00000448833 PGA3P0DJD8 388 aa6.08□□□□□ -1.44
VPS41-208ENST00000448833 TROVE2P10155 538 aaKnown RBP eCLIP6.08□□□□□ -1.44
VPS41-208ENST00000448833 ZNF250P15622 560 aa6.08□□□□□ -1.44
VPS41-208ENST00000448833 ACADSP16219 412 aa6.08□□□□□ -1.44
VPS41-208ENST00000448833 FUT1P19526 365 aa6.08□□□□□ -1.44
VPS41-208ENST00000448833 TUBG1P23258 451 aa6.08□□□□□ -1.44
VPS41-208ENST00000448833 APLNRP35414 380 aa6.08□□□□□ -1.44
VPS41-208ENST00000448833 UCP2P55851 309 aa6.08□□□□□ -1.44
VPS41-208ENST00000448833 MTPNP58546 118 aa6.08□□□□□ -1.44
VPS41-208ENST00000448833 PCBD1P61457 104 aa6.08□□□□□ -1.44
VPS41-208ENST00000448833 MRPS34P82930 218 aaKnown RBP6.08□□□□□ -1.44
VPS41-208ENST00000448833 RAB39AQ14964 217 aa6.08□□□□□ -1.44
VPS41-208ENST00000448833 HIST3H3Q16695 136 aa6.08□□□□□ -1.44
VPS41-208ENST00000448833 ZMAT1Q5H9K5 638 aa6.08□□□□□ -1.44
VPS41-208ENST00000448833 SHQ1Q6PI26 577 aaKnown RBP6.08□□□□□ -1.44
VPS41-208ENST00000448833 LRFN4Q6PJG9 635 aa6.08□□□□□ -1.44
VPS41-208ENST00000448833 MYPOPQ86VE0 399 aaPredicted RBP6.08□□□□□ -1.44
VPS41-208ENST00000448833 COMTD1Q86VU5 262 aa6.08□□□□□ -1.44
VPS41-208ENST00000448833 TREML1Q86YW5 311 aa6.08□□□□□ -1.44
VPS41-208ENST00000448833 CDK20Q8IZL9 346 aa6.08□□□□□ -1.44
VPS41-208ENST00000448833 ZCCHC24Q8N2G6 241 aaKnown RBP6.08□□□□□ -1.44
VPS41-208ENST00000448833 C10orf111Q8N326 155 aa6.08□□□□□ -1.44
VPS41-208ENST00000448833 ARIH2OSQ8N7S6 290 aa6.08□□□□□ -1.44
VPS41-208ENST00000448833 RBM15BQ8NDT2 890 aaKnown RBP6.08□□□□□ -1.44
VPS41-208ENST00000448833 GPR32P1Q8NGA4 272 aa6.08□□□□□ -1.44
VPS41-208ENST00000448833 OR8J3Q8NGG0 315 aa6.08□□□□□ -1.44
VPS41-208ENST00000448833 OR51F2Q8NH61 342 aa6.08□□□□□ -1.44
VPS41-208ENST00000448833 OR10A6Q8NH74 314 aa6.08□□□□□ -1.44
VPS41-208ENST00000448833 VANGL1Q8TAA9 524 aaPredicted RBP6.08□□□□□ -1.44
VPS41-208ENST00000448833 ZFAND2BQ8WV99 257 aa6.08□□□□□ -1.44
VPS41-208ENST00000448833 LIPHQ8WWY8 451 aa6.08□□□□□ -1.44
VPS41-208ENST00000448833 MCHR2Q969V1 340 aa6.08□□□□□ -1.44
VPS41-208ENST00000448833 LRRC58Q96CX6 371 aa6.08□□□□□ -1.44
VPS41-208ENST00000448833 TIMD4Q96H15 378 aa6.08□□□□□ -1.44
VPS41-208ENST00000448833 RBP7Q96R05 134 aa6.08□□□□□ -1.44
VPS41-208ENST00000448833 WACQ9BTA9 647 aa6.08□□□□□ -1.44
VPS41-208ENST00000448833 C19orf24Q9BVV8 132 aa6.08□□□□□ -1.44
VPS41-208ENST00000448833 RSPO3Q9BXY4 272 aaPredicted RBP6.08□□□□□ -1.44
VPS41-208ENST00000448833 NDEL1Q9GZM8 345 aa6.08□□□□□ -1.44
VPS41-208ENST00000448833 NANOGQ9H9S0 305 aa6.08□□□□□ -1.44
VPS41-208ENST00000448833 SEC61A2Q9H9S3 476 aa6.08□□□□□ -1.44
VPS41-208ENST00000448833 SIAEQ9HAT2 523 aa6.08□□□□□ -1.44
VPS41-208ENST00000448833 NPHS2Q9NP85 383 aa6.08□□□□□ -1.44
VPS41-208ENST00000448833 CCNB1IP1Q9NPC3 277 aa6.08□□□□□ -1.44
VPS41-208ENST00000448833 HINT3Q9NQE9 182 aaKnown RBP6.08□□□□□ -1.44
VPS41-208ENST00000448833 TUBG2Q9NRH3 451 aa6.08□□□□□ -1.44
VPS41-208ENST00000448833 INIPQ9NRY2 104 aa6.08□□□□□ -1.44
VPS41-208ENST00000448833 CYSLTR2Q9NS75 346 aa6.08□□□□□ -1.44
VPS41-208ENST00000448833 DECR2Q9NUI1 292 aa6.08□□□□□ -1.44
VPS41-208ENST00000448833 CGGBP1Q9UFW8 167 aaPredicted RBP6.08□□□□□ -1.44
VPS41-208ENST00000448833 RIMS3Q9UJD0 308 aa6.08□□□□□ -1.44
VPS41-208ENST00000448833 SH3GLB1Q9Y371 365 aa6.08□□□□□ -1.44
VPS41-208ENST00000448833 MED31Q9Y3C7 131 aa6.08□□□□□ -1.44
VPS41-208ENST00000448833 ANK3Q12955 4377 aaKnown RBP6.08□□□□□ -1.44
VPS41-208ENST00000448833 STAB1Q9NY15 2570 aa6.08□□□□□ -1.44
VPS41-208ENST00000448833 TRAV20A0A0B4J274 112 aa6.07□□□□□ -1.44
VPS41-208ENST00000448833 PLSCR5A0PG75 271 aa6.07□□□□□ -1.44
VPS41-208ENST00000448833 C17orf100A8MU93 164 aa6.07□□□□□ -1.44
VPS41-208ENST00000448833 LRRN3E7EW58 273 aa6.07□□□□□ -1.44
VPS41-208ENST00000448833 H3BSA7 217 aa6.07□□□□□ -1.44
VPS41-208ENST00000448833 NDUFAB1O14561 156 aa6.07□□□□□ -1.44
VPS41-208ENST00000448833 TPD52L2O43399 206 aaKnown RBP6.07□□□□□ -1.44
VPS41-208ENST00000448833 PPIHO43447 177 aaKnown RBP6.07□□□□□ -1.44
VPS41-208ENST00000448833 OR7A10O76100 309 aa6.07□□□□□ -1.44
VPS41-208ENST00000448833 IGHV3-13P01766 116 aa6.07□□□□□ -1.44
VPS41-208ENST00000448833 LCKP06239 509 aa6.07□□□□□ -1.44
VPS41-208ENST00000448833 MSMBP08118 114 aa6.07□□□□□ -1.44
VPS41-208ENST00000448833 SAGP10523 405 aaPredicted RBP6.07□□□□□ -1.44
VPS41-208ENST00000448833 GATA3P23771 443 aa6.07□□□□□ -1.44
VPS41-208ENST00000448833 GCH1P30793 250 aa6.07□□□□□ -1.44
VPS41-208ENST00000448833 CRYBB2P43320 205 aa6.07□□□□□ -1.44
VPS41-208ENST00000448833 ZNF133P52736 654 aaPredicted RBP6.07□□□□□ -1.44
VPS41-208ENST00000448833 MYBPC1Q00872 1141 aa6.07□□□□□ -1.44
VPS41-208ENST00000448833 HSF2Q03933 536 aa6.07□□□□□ -1.44
VPS41-208ENST00000448833 SLC3A1Q07837 685 aa6.07□□□□□ -1.44
VPS41-208ENST00000448833 ST3GAL3Q11203 375 aa6.07□□□□□ -1.44
VPS41-208ENST00000448833 HFEQ30201 348 aa6.07□□□□□ -1.44
VPS41-208ENST00000448833 KRTAP24-1Q3LI83 254 aa6.07□□□□□ -1.44
VPS41-208ENST00000448833 ZNF718Q3SXZ3 478 aa6.07□□□□□ -1.44
VPS41-208ENST00000448833 ELFN2Q5R3F8 820 aa6.07□□□□□ -1.44
VPS41-208ENST00000448833 THEM4Q5T1C6 240 aa6.07□□□□□ -1.44
VPS41-208ENST00000448833 C10orf128Q5T292 105 aa6.07□□□□□ -1.44
VPS41-208ENST00000448833 FAM205BPQ63HN1 556 aa6.07□□□□□ -1.44
VPS41-208ENST00000448833 NANOGP8Q6NSW7 305 aa6.07□□□□□ -1.44
VPS41-208ENST00000448833 ACSM5Q6NUN0 579 aa6.07□□□□□ -1.44
VPS41-208ENST00000448833 DEF8Q6ZN54 512 aa6.07□□□□□ -1.44
VPS41-208ENST00000448833 ZER1Q7Z7L7 766 aa6.07□□□□□ -1.44
VPS41-208ENST00000448833 PEG10Q86TG7 708 aaKnown RBP6.07□□□□□ -1.44
VPS41-208ENST00000448833 CARM1Q86X55 608 aa6.07□□□□□ -1.44
VPS41-208ENST00000448833 LRRC17Q8N6Y2 441 aa6.07□□□□□ -1.44
VPS41-208ENST00000448833 OR4K5Q8NGD3 323 aa6.07□□□□□ -1.44
VPS41-208ENST00000448833 ZNF418Q8TF45 676 aaPredicted RBP6.07□□□□□ -1.44
VPS41-208ENST00000448833 TMEM239Q8WW34 195 aa6.07□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms