RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 OR10H5Q8NGA6 315 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 OR4K5Q8NGD3 323 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 OR6X1Q8NH79 312 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 ABHD4Q8TB40 342 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 PHOSPHO1Q8TCT1 267 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 RNF141Q8WVD5 230 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 THAP4Q8WY91 577 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 OR5B2Q96R09 309 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 GINS4Q9BRT9 223 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 NDC1Q9BTX1 674 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 ZNF426Q9BUY5 554 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 SEC61A2Q9H9S3 476 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 MRPS30Q9NP92 439 aaKnown RBP4.8□□□□□ -1.64
USP28-213ENST00000544967 RCC2Q9P258 522 aaKnown RBP4.8□□□□□ -1.64
USP28-213ENST00000544967 ZBTB32Q9Y2Y4 487 aaPredicted RBP4.8□□□□□ -1.64
USP28-213ENST00000544967 FCF1Q9Y324 198 aaKnown RBP4.8□□□□□ -1.64
USP28-213ENST00000544967 TRBV6-7A0A0A0MS04 114 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 A0A1W2PPC4 97 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 SMIM30A4D0T7 59 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 METTL21EPA6NDL7 271 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 POM121BA6NF01 834 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 MKRN2OSH3BPM6 223 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 MFNGO00587 321 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 TM4SF5O14894 197 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 LRATO95237 230 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 TNFRSF6BO95407 300 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 SIX6O95475 246 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 B3GALT4O96024 378 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 F10P00742 488 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 IGHEP01854 428 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 OPN1SWP03999 348 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 EPHX1P07099 455 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 ANXA4P09525 319 aaPredicted RBP4.8□□□□□ -1.64
USP28-213ENST00000544967 PRSS56P0CW18 603 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 NT5EP21589 574 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 MPZP25189 248 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 SERPINA4P29622 427 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 PDHA2P29803 388 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 VIPR1P32241 457 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 SOX18P35713 384 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 NSG1P42857 185 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 SLC6A9P48067 706 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 RGS8P57771 180 aaPredicted RBP4.8□□□□□ -1.64
USP28-213ENST00000544967 SNRPEP62304 92 aaKnown RBP4.8□□□□□ -1.64
USP28-213ENST00000544967 RAB1AP62820 205 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 BLOC1S1P78537 153 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 CNTN1Q12860 1018 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 CSRP2Q16527 193 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 PGGHGQ32M88 737 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 PODNL1Q6PEZ8 512 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 SLC16A13Q7RTY0 426 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 C6orf120Q7Z4R8 191 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 NAA40Q86UY6 237 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 FJX1Q86VR8 437 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 C17orf82Q86X59 251 aaPredicted RBP4.8□□□□□ -1.64
USP28-213ENST00000544967 OR6T1Q8NGN1 323 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 OR5W2Q8NH69 310 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 SNIP1Q8TAD8 396 aaKnown RBP4.8□□□□□ -1.64
USP28-213ENST00000544967 ASB11Q8WXH4 323 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 OR5P2Q8WZ92 322 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 RAB24Q969Q5 203 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 PGLYRP3Q96LB9 341 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 LMF1Q96S06 567 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 PARD6GQ9BYG4 376 aaPredicted RBP4.8□□□□□ -1.64
USP28-213ENST00000544967 ACKR4Q9NPB9 350 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 CUTCQ9NTM9 273 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 UQCC1Q9NVA1 299 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 RCE1Q9Y256 329 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 KPTNQ9Y664 436 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 PTPRBP23467 1997 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 TRAV14DV4A0A0A6YYC5 116 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 GGT3PA6NGU5 568 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 SLC22A31A6NKX4 558 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 RPL36A-HNRNPH2H7BZ11 118 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 CRTAPO75718 401 aaPredicted RBP4.8□□□□□ -1.64
USP28-213ENST00000544967 SLC25A14O95258 325 aaPredicted RBP4.8□□□□□ -1.64
USP28-213ENST00000544967 C1GALT1C1LP0DN25 315 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 ANXA7P20073 488 aaKnown RBP4.8□□□□□ -1.64
USP28-213ENST00000544967 AQP1P29972 269 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 RBM34P42696 430 aaKnown RBP4.8□□□□□ -1.64
USP28-213ENST00000544967 ANXA11P50995 505 aaKnown RBP4.8□□□□□ -1.64
USP28-213ENST00000544967 H2BFSP57053 126 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 YPEL5P62699 121 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 RPS21P63220 83 aaKnown RBP4.8□□□□□ -1.64
USP28-213ENST00000544967 GANABQ14697 944 aaKnown RBP4.8□□□□□ -1.64
USP28-213ENST00000544967 DECR1Q16698 335 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 SSX9Q7RTT3 188 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 SERPINA9Q86WD7 417 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 BEND2Q8NDZ0 799 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 OR9A4Q8NGU2 314 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 HAVCR1Q96D42 359 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 SLC25A21Q9BQT8 299 aaPredicted RBP4.8□□□□□ -1.64
USP28-213ENST00000544967 UBQLN3Q9H347 655 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 BCO1Q9HAY6 547 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 SLC17A5Q9NRA2 495 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 DUSP22Q9NRW4 184 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 GHRLQ9UBU3 117 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 TIMM10BQ9Y5J6 103 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 ADAMTS9Q9P2N4 1935 aa4.79□□□□□ -1.64
USP28-213ENST00000544967 FXYD6-FXYD2A0A087WZ82 144 aa4.79□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 96.3 ms