RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 TAS2R16Q9NYV7 291 aa26.08■■□□□ 1.77
LIMCH1-211ENST00000509638 BAIAP2Q9UQB8 552 aa26.08■■□□□ 1.77
LIMCH1-211ENST00000509638 ORC6Q9Y5N6 252 aa26.08■■□□□ 1.77
LIMCH1-211ENST00000509638 A1L4Q6 167 aa26.07■■□□□ 1.76
LIMCH1-211ENST00000509638 CRISP1P54107 249 aa26.07■■□□□ 1.76
LIMCH1-211ENST00000509638 FMODQ06828 376 aa26.07■■□□□ 1.76
LIMCH1-211ENST00000509638 ITGADQ13349 1161 aa26.07■■□□□ 1.76
LIMCH1-211ENST00000509638 TSC22D1Q15714 1073 aa26.07■■□□□ 1.76
LIMCH1-211ENST00000509638 HIST3H3Q16695 136 aa26.07■■□□□ 1.76
LIMCH1-211ENST00000509638 PTCHD4Q6ZW05 846 aa26.07■■□□□ 1.76
LIMCH1-211ENST00000509638 JAZF1Q86VZ6 243 aa26.07■■□□□ 1.76
LIMCH1-211ENST00000509638 PTPN13Q12923 2485 aa26.07■■□□□ 1.76
LIMCH1-211ENST00000509638 PRSS37A4D1T9 235 aa26.07■■□□□ 1.76
LIMCH1-211ENST00000509638 MPGP29372 298 aa26.07■■□□□ 1.76
LIMCH1-211ENST00000509638 SLC34A1Q06495 639 aa26.07■■□□□ 1.76
LIMCH1-211ENST00000509638 GINS1Q14691 196 aa26.07■■□□□ 1.76
LIMCH1-211ENST00000509638 CEACAM16Q2WEN9 425 aa26.07■■□□□ 1.76
LIMCH1-211ENST00000509638 OR4K13Q8NH42 304 aa26.07■■□□□ 1.76
LIMCH1-211ENST00000509638 KISS1RQ969F8 398 aaPredicted RBP26.07■■□□□ 1.76
LIMCH1-211ENST00000509638 ZNF837Q96EG3 531 aaPredicted RBP26.07■■□□□ 1.76
LIMCH1-211ENST00000509638 GABARAPL3Q9BY60 117 aa26.07■■□□□ 1.76
LIMCH1-211ENST00000509638 RIBC2Q9H4K1 309 aa26.07■■□□□ 1.76
LIMCH1-211ENST00000509638 KLF2Q9Y5W3 355 aaPredicted RBP26.07■■□□□ 1.76
LIMCH1-211ENST00000509638 CASQ2O14958 399 aaPredicted RBP26.06■■□□□ 1.76
LIMCH1-211ENST00000509638 QDPRP09417 244 aa26.06■■□□□ 1.76
LIMCH1-211ENST00000509638 NR2C1P13056 603 aa26.06■■□□□ 1.76
LIMCH1-211ENST00000509638 PSMB1P20618 241 aaKnown RBP26.06■■□□□ 1.76
LIMCH1-211ENST00000509638 EPHA2P29317 976 aa26.06■■□□□ 1.76
LIMCH1-211ENST00000509638 UGT2B10P36537 528 aa26.06■■□□□ 1.76
LIMCH1-211ENST00000509638 TMEM236Q5W0B7 351 aa26.06■■□□□ 1.76
LIMCH1-211ENST00000509638 ZNF433Q8N7K0 673 aaPredicted RBP26.06■■□□□ 1.76
LIMCH1-211ENST00000509638 SDR9C7Q8NEX9 313 aa26.06■■□□□ 1.76
LIMCH1-211ENST00000509638 MCHR2Q969V1 340 aa26.06■■□□□ 1.76
LIMCH1-211ENST00000509638 NMD3Q96D46 503 aaKnown RBP26.06■■□□□ 1.76
LIMCH1-211ENST00000509638 SYT4Q9H2B2 425 aa26.06■■□□□ 1.76
LIMCH1-211ENST00000509638 SLC25A19Q9HC21 320 aa26.06■■□□□ 1.76
LIMCH1-211ENST00000509638 SLC22A23A1A5C7 686 aa26.05■■□□□ 1.76
LIMCH1-211ENST00000509638 RPL36A-HNRNPH2H7BZ11 118 aa26.05■■□□□ 1.76
LIMCH1-211ENST00000509638 C19orf84I3L1E1 186 aa26.05■■□□□ 1.76
LIMCH1-211ENST00000509638 SLC2A10O95528 541 aa26.05■■□□□ 1.76
LIMCH1-211ENST00000509638 CLDN1O95832 211 aa26.05■■□□□ 1.76
LIMCH1-211ENST00000509638 CDH2P19022 906 aaPredicted RBP26.05■■□□□ 1.76
LIMCH1-211ENST00000509638 CDKN2AP42771 156 aaKnown RBP26.05■■□□□ 1.76
LIMCH1-211ENST00000509638 GIPRP48546 466 aa26.05■■□□□ 1.76
LIMCH1-211ENST00000509638 SFRP5Q5T4F7 317 aa26.05■■□□□ 1.76
LIMCH1-211ENST00000509638 LEG1Q6P5S2 330 aa26.05■■□□□ 1.76
LIMCH1-211ENST00000509638 LRFN4Q6PJG9 635 aa26.05■■□□□ 1.76
LIMCH1-211ENST00000509638 OR52E2Q8NGJ4 325 aa26.05■■□□□ 1.76
LIMCH1-211ENST00000509638 NMNAT3Q96T66 252 aa26.05■■□□□ 1.76
LIMCH1-211ENST00000509638 PRSS44E7EML9 344 aa26.04■■□□□ 1.76
LIMCH1-211ENST00000509638 RAD51DO75771 328 aa26.04■■□□□ 1.76
LIMCH1-211ENST00000509638 IL32P24001 234 aa26.04■■□□□ 1.76
LIMCH1-211ENST00000509638 GRK5P34947 590 aa26.04■■□□□ 1.76
LIMCH1-211ENST00000509638 RAD23AP54725 363 aa26.04■■□□□ 1.76
LIMCH1-211ENST00000509638 CDK5Q00535 292 aa26.04■■□□□ 1.76
LIMCH1-211ENST00000509638 KHDRBS1Q07666 443 aaKnown RBP eCLIP26.04■■□□□ 1.76
LIMCH1-211ENST00000509638 RIPK1Q13546 671 aa26.04■■□□□ 1.76
LIMCH1-211ENST00000509638 PTGES3Q15185 160 aaKnown RBP26.04■■□□□ 1.76
LIMCH1-211ENST00000509638 OGFRL1Q5TC84 451 aaPredicted RBP26.04■■□□□ 1.76
LIMCH1-211ENST00000509638 VSX1Q9NZR4 365 aaPredicted RBP26.04■■□□□ 1.76
LIMCH1-211ENST00000509638 C16orf97H3BN30 126 aa26.03■■□□□ 1.76
LIMCH1-211ENST00000509638 ATP6V1G2O95670 118 aa26.03■■□□□ 1.76
LIMCH1-211ENST00000509638 PCYT1AP49585 367 aa26.03■■□□□ 1.76
LIMCH1-211ENST00000509638 SORDQ00796 357 aa26.03■■□□□ 1.76
LIMCH1-211ENST00000509638 NPRL3Q12980 569 aa26.03■■□□□ 1.76
LIMCH1-211ENST00000509638 THEM4Q5T1C6 240 aa26.03■■□□□ 1.76
LIMCH1-211ENST00000509638 ACSM5Q6NUN0 579 aa26.03■■□□□ 1.76
LIMCH1-211ENST00000509638 BHLHA15Q7RTS1 189 aaPredicted RBP26.03■■□□□ 1.76
LIMCH1-211ENST00000509638 FNDC8Q8TC99 324 aa26.03■■□□□ 1.76
LIMCH1-211ENST00000509638 IGKV1D-43A0A0B4J1Z2 117 aa26.03■■□□□ 1.76
LIMCH1-211ENST00000509638 RIIAD1A6NNX1 92 aa26.03■■□□□ 1.76
LIMCH1-211ENST00000509638 AHCYL1O43865 530 aa26.03■■□□□ 1.76
LIMCH1-211ENST00000509638 SEC14L2O76054 403 aa26.03■■□□□ 1.76
LIMCH1-211ENST00000509638 POLR2IP36954 125 aaKnown RBP26.03■■□□□ 1.76
LIMCH1-211ENST00000509638 SH3BGRP55822 239 aaPredicted RBP26.03■■□□□ 1.76
LIMCH1-211ENST00000509638 TGFBR3Q03167 851 aa26.03■■□□□ 1.76
LIMCH1-211ENST00000509638 GALNT4Q8N4A0 578 aa26.03■■□□□ 1.76
LIMCH1-211ENST00000509638 RBP7Q96R05 134 aa26.03■■□□□ 1.76
LIMCH1-211ENST00000509638 ACTR6Q9GZN1 396 aa26.03■■□□□ 1.76
LIMCH1-211ENST00000509638 GPR52Q9Y2T5 361 aa26.03■■□□□ 1.76
LIMCH1-211ENST00000509638 CIB4A0PJX0 185 aa26.02■■□□□ 1.76
LIMCH1-211ENST00000509638 ZNF99A8MXY4 864 aaPredicted RBP26.02■■□□□ 1.76
LIMCH1-211ENST00000509638 SNTB1Q13884 538 aaKnown RBP26.02■■□□□ 1.76
LIMCH1-211ENST00000509638 ZIK1Q3SY52 487 aaPredicted RBP26.02■■□□□ 1.76
LIMCH1-211ENST00000509638 C10orf128Q5T292 105 aa26.02■■□□□ 1.76
LIMCH1-211ENST00000509638 CYB561A3Q8NBI2 242 aa26.02■■□□□ 1.76
LIMCH1-211ENST00000509638 NSMAFQ92636 917 aa26.02■■□□□ 1.76
LIMCH1-211ENST00000509638 FN3KQ9H479 309 aa26.02■■□□□ 1.76
LIMCH1-211ENST00000509638 CMC2Q9NRP2 79 aa26.02■■□□□ 1.76
LIMCH1-211ENST00000509638 KLHL21Q9UJP4 597 aa26.02■■□□□ 1.76
LIMCH1-211ENST00000509638 ZAR1LA6NP61 321 aa26.01■■□□□ 1.75
LIMCH1-211ENST00000509638 DHHO43323 396 aa26.01■■□□□ 1.75
LIMCH1-211ENST00000509638 RENP00797 406 aa26.01■■□□□ 1.75
LIMCH1-211ENST00000509638 IFNGP01579 166 aa26.01■■□□□ 1.75
LIMCH1-211ENST00000509638 ZNF3P17036 446 aa26.01■■□□□ 1.75
LIMCH1-211ENST00000509638 ZNF133P52736 654 aaPredicted RBP26.01■■□□□ 1.75
LIMCH1-211ENST00000509638 ARF1P84077 181 aaKnown RBP26.01■■□□□ 1.75
LIMCH1-211ENST00000509638 NPEPL1Q8NDH3 523 aa26.01■■□□□ 1.75
LIMCH1-211ENST00000509638 C1orf162Q8NEQ5 155 aaPredicted RBP26.01■■□□□ 1.75
LIMCH1-211ENST00000509638 S100PBPQ96BU1 408 aa26.01■■□□□ 1.75
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms