RNA–Protein interactions for RNA: ENST00000460170.2

PTPRU-205, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 1 (best) BASIC

Gene PTPRU, Length 5,337 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-205ENST00000460170 B4DXG7 233 aa13.53□□□□□ -0.24
PTPRU-205ENST00000460170 C1QBP02746 253 aa13.53□□□□□ -0.24
PTPRU-205ENST00000460170 EFNA3P52797 238 aa13.53□□□□□ -0.24
PTPRU-205ENST00000460170 KCNAB1Q14722 419 aa13.53□□□□□ -0.24
PTPRU-205ENST00000460170 SLC9A3R2Q15599 337 aa13.53□□□□□ -0.24
PTPRU-205ENST00000460170 EMC4Q5J8M3 183 aa13.53□□□□□ -0.24
PTPRU-205ENST00000460170 GPR32P1Q8NGA4 272 aa13.53□□□□□ -0.24
PTPRU-205ENST00000460170 UNKLQ9H9P5 680 aaKnown RBP13.53□□□□□ -0.24
PTPRU-205ENST00000460170 SERPINE2P07093 398 aa13.52□□□□□ -0.24
PTPRU-205ENST00000460170 EXOSC6Q5RKV6 272 aaKnown RBP13.52□□□□□ -0.24
PTPRU-205ENST00000460170 PLCXD3Q63HM9 321 aa13.52□□□□□ -0.24
PTPRU-205ENST00000460170 SMIM19Q96E16 107 aa13.52□□□□□ -0.24
PTPRU-205ENST00000460170 ARHGDIGQ99819 225 aa13.52□□□□□ -0.24
PTPRU-205ENST00000460170 METTL9Q9H1A3 318 aa13.52□□□□□ -0.24
PTPRU-205ENST00000460170 CCL27Q9Y4X3 112 aa13.52□□□□□ -0.24
PTPRU-205ENST00000460170 C2orf72A6NCS6 295 aa13.52□□□□□ -0.24
PTPRU-205ENST00000460170 POM121CA8CG34 1229 aa13.52□□□□□ -0.24
PTPRU-205ENST00000460170 AGAP14A8MT82 685 aa13.52□□□□□ -0.24
PTPRU-205ENST00000460170 SSX5O60225 188 aa13.52□□□□□ -0.24
PTPRU-205ENST00000460170 IFNA1P01562 189 aa13.52□□□□□ -0.24
PTPRU-205ENST00000460170 ICAM2P13598 275 aa13.52□□□□□ -0.24
PTPRU-205ENST00000460170 CX3CR1P49238 355 aa13.52□□□□□ -0.24
PTPRU-205ENST00000460170 BOLLQ8N9W6 283 aaKnown RBP13.52□□□□□ -0.24
PTPRU-205ENST00000460170 DVL3Q92997 716 aaPredicted RBP13.52□□□□□ -0.24
PTPRU-205ENST00000460170 HLA-CQ95604 372 aa13.52□□□□□ -0.24
PTPRU-205ENST00000460170 RSPRY1Q96DX4 576 aa13.52□□□□□ -0.24
PTPRU-205ENST00000460170 SEC22CQ9BRL7 303 aa13.52□□□□□ -0.24
PTPRU-205ENST00000460170 SRRQ9GZT4 340 aa13.52□□□□□ -0.24
PTPRU-205ENST00000460170 PPA2Q9H2U2 334 aa13.52□□□□□ -0.24
PTPRU-205ENST00000460170 ZMAT3Q9HA38 289 aaKnown RBP13.52□□□□□ -0.24
PTPRU-205ENST00000460170 MAGEB4O15481 346 aaPredicted RBP13.52□□□□□ -0.25
PTPRU-205ENST00000460170 FCGR2AP12318 317 aa13.52□□□□□ -0.25
PTPRU-205ENST00000460170 MSX1P28360 303 aa13.52□□□□□ -0.25
PTPRU-205ENST00000460170 ZNF93P35789 620 aaPredicted RBP13.52□□□□□ -0.25
PTPRU-205ENST00000460170 SSR4P51571 173 aa13.52□□□□□ -0.25
PTPRU-205ENST00000460170 MTCP1P56278 107 aa13.52□□□□□ -0.25
PTPRU-205ENST00000460170 SEC61A1P61619 476 aaKnown RBP13.52□□□□□ -0.25
PTPRU-205ENST00000460170 GABREP78334 506 aa13.52□□□□□ -0.25
PTPRU-205ENST00000460170 DGCR2P98153 550 aa13.52□□□□□ -0.25
PTPRU-205ENST00000460170 MFAP5Q13361 173 aa13.52□□□□□ -0.25
PTPRU-205ENST00000460170 CDK5R1Q15078 307 aa13.52□□□□□ -0.25
PTPRU-205ENST00000460170 MKXQ8IYA7 352 aa13.52□□□□□ -0.25
PTPRU-205ENST00000460170 ADGRF3Q8IZF5 1079 aa13.52□□□□□ -0.25
PTPRU-205ENST00000460170 PIGCQ92535 297 aa13.52□□□□□ -0.25
PTPRU-205ENST00000460170 SEC22AQ96IW7 307 aa13.52□□□□□ -0.25
PTPRU-205ENST00000460170 DCBLD2Q96PD2 775 aa13.52□□□□□ -0.25
PTPRU-205ENST00000460170 CMSS1Q9BQ75 279 aaKnown RBP13.52□□□□□ -0.25
PTPRU-205ENST00000460170 SLC25A21Q9BQT8 299 aaPredicted RBP13.52□□□□□ -0.25
PTPRU-205ENST00000460170 IGHV3-20A0A0C4DH32 117 aa13.52□□□□□ -0.25
PTPRU-205ENST00000460170 ANKRD30BLA7E2S9 258 aa13.52□□□□□ -0.25
PTPRU-205ENST00000460170 H0YIG0 161 aa13.52□□□□□ -0.25
PTPRU-205ENST00000460170 CAPZBP47756 277 aa13.52□□□□□ -0.25
PTPRU-205ENST00000460170 C21orf58P58505 322 aa13.52□□□□□ -0.25
PTPRU-205ENST00000460170 AKR1C8PQ5T2L2 129 aa13.52□□□□□ -0.25
PTPRU-205ENST00000460170 SLC16A14Q7RTX9 510 aa13.52□□□□□ -0.25
PTPRU-205ENST00000460170 ZNF784Q8NCA9 323 aaPredicted RBP13.52□□□□□ -0.25
PTPRU-205ENST00000460170 OR52I2Q8NH67 350 aa13.52□□□□□ -0.25
PTPRU-205ENST00000460170 SGCZQ96LD1 299 aa13.52□□□□□ -0.25
PTPRU-205ENST00000460170 MCOLN1Q9GZU1 580 aa13.52□□□□□ -0.25
PTPRU-205ENST00000460170 IL20Q9NYY1 176 aa13.52□□□□□ -0.25
PTPRU-205ENST00000460170 RAB22AQ9UL26 194 aa13.52□□□□□ -0.25
PTPRU-205ENST00000460170 SLC22A23A1A5C7 686 aa13.51□□□□□ -0.25
PTPRU-205ENST00000460170 PRAMEF25A6NGN4 478 aa13.51□□□□□ -0.25
PTPRU-205ENST00000460170 ATG12O94817 140 aa13.51□□□□□ -0.25
PTPRU-205ENST00000460170 WISP3O95389 354 aaPredicted RBP13.51□□□□□ -0.25
PTPRU-205ENST00000460170 HTR5AP47898 357 aa13.51□□□□□ -0.25
PTPRU-205ENST00000460170 GLYR1Q49A26 553 aaPredicted RBP13.51□□□□□ -0.25
PTPRU-205ENST00000460170 NKAIN1Q4KMZ8 207 aa13.51□□□□□ -0.25
PTPRU-205ENST00000460170 CCDC190Q86UF4 302 aa13.51□□□□□ -0.25
PTPRU-205ENST00000460170 ZNF547Q8IVP9 402 aa13.51□□□□□ -0.25
PTPRU-205ENST00000460170 ARIH2OSQ8N7S6 290 aa13.51□□□□□ -0.25
PTPRU-205ENST00000460170 NELFAQ9H3P2 528 aa13.51□□□□□ -0.25
PTPRU-205ENST00000460170 CCDC86Q9H6F5 360 aaKnown RBP13.51□□□□□ -0.25
PTPRU-205ENST00000460170 NAGAP17050 411 aa13.51□□□□□ -0.25
PTPRU-205ENST00000460170 FAM53BQ14153 422 aa13.51□□□□□ -0.25
PTPRU-205ENST00000460170 BAK1Q16611 211 aa13.51□□□□□ -0.25
PTPRU-205ENST00000460170 SLC36A2Q495M3 483 aa13.51□□□□□ -0.25
PTPRU-205ENST00000460170 WDR88Q6ZMY6 472 aa13.51□□□□□ -0.25
PTPRU-205ENST00000460170 MOB3CQ70IA8 216 aa13.51□□□□□ -0.25
PTPRU-205ENST00000460170 AAED1Q7RTV5 226 aa13.51□□□□□ -0.25
PTPRU-205ENST00000460170 KIAA1958Q8N8K9 716 aa13.51□□□□□ -0.25
PTPRU-205ENST00000460170 EDAQ92838 391 aa13.51□□□□□ -0.25
PTPRU-205ENST00000460170 ISG20L2Q9H9L3 353 aaKnown RBP13.51□□□□□ -0.25
PTPRU-205ENST00000460170 BOKQ9UMX3 212 aaPredicted RBP13.51□□□□□ -0.25
PTPRU-205ENST00000460170 M0QYG6 137 aa13.51□□□□□ -0.25
PTPRU-205ENST00000460170 AGPAT2O15120 278 aa13.51□□□□□ -0.25
PTPRU-205ENST00000460170 RAC2P15153 192 aa13.51□□□□□ -0.25
PTPRU-205ENST00000460170 PCBP4P57723 403 aaKnown RBP13.51□□□□□ -0.25
PTPRU-205ENST00000460170 TMEM201Q5SNT2 666 aa13.51□□□□□ -0.25
PTPRU-205ENST00000460170 SLC16A12Q6ZSM3 486 aa13.51□□□□□ -0.25
PTPRU-205ENST00000460170 SYT9Q86SS6 491 aa13.51□□□□□ -0.25
PTPRU-205ENST00000460170 LINC01555Q8NAE3 123 aa13.51□□□□□ -0.25
PTPRU-205ENST00000460170 OR5D18Q8NGL1 313 aa13.51□□□□□ -0.25
PTPRU-205ENST00000460170 GLYATL2Q8WU03 294 aa13.51□□□□□ -0.25
PTPRU-205ENST00000460170 LAT2Q9GZY6 243 aa13.51□□□□□ -0.25
PTPRU-205ENST00000460170 SERGEFQ9UGK8 458 aa13.51□□□□□ -0.25
PTPRU-205ENST00000460170 TAF1LQ8IZX4 1826 aa13.51□□□□□ -0.25
PTPRU-205ENST00000460170 EIF1BO60739 113 aaKnown RBP13.51□□□□□ -0.25
PTPRU-205ENST00000460170 RPL18Q07020 188 aaKnown RBP13.51□□□□□ -0.25
PTPRU-205ENST00000460170 USF2Q15853 346 aaPredicted RBP13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 374.8 ms