RNA–Protein interactions for RNA: ENST00000395802.7

VAPB-202, Transcript of VAMP associated protein B and C, humanhuman

TSL 1 (best) BASIC

Gene VAPB, Length 1,834 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-202ENST00000395802 RAB36O95755 333 aa12.18□□□□□ -0.46
VAPB-202ENST00000395802 SLC2A5P22732 501 aa12.18□□□□□ -0.46
VAPB-202ENST00000395802 MAP2K4P45985 399 aa12.18□□□□□ -0.46
VAPB-202ENST00000395802 ACTC1P68032 377 aa12.18□□□□□ -0.46
VAPB-202ENST00000395802 ACTA1P68133 377 aa12.18□□□□□ -0.46
VAPB-202ENST00000395802 GGTLC2Q14390 218 aa12.18□□□□□ -0.46
VAPB-202ENST00000395802 TBCEQ15813 527 aaPredicted RBP12.18□□□□□ -0.46
VAPB-202ENST00000395802 RNLSQ5VYX0 342 aa12.18□□□□□ -0.46
VAPB-202ENST00000395802 OR2A2Q6IF42 318 aa12.18□□□□□ -0.46
VAPB-202ENST00000395802 Q8NA96 180 aa12.18□□□□□ -0.46
VAPB-202ENST00000395802 NOXO1Q8NFA2 376 aa12.18□□□□□ -0.46
VAPB-202ENST00000395802 BBS1Q8NFJ9 593 aa12.18□□□□□ -0.46
VAPB-202ENST00000395802 OR9Q1Q8NGQ5 310 aa12.18□□□□□ -0.46
VAPB-202ENST00000395802 OR6K6Q8NGW6 343 aa12.18□□□□□ -0.46
VAPB-202ENST00000395802 FNDC9Q8TBE3 224 aa12.18□□□□□ -0.46
VAPB-202ENST00000395802 WBP1Q96G27 269 aa12.18□□□□□ -0.46
VAPB-202ENST00000395802 MRPL13Q9BYD1 178 aaKnown RBP12.18□□□□□ -0.46
VAPB-202ENST00000395802 NUAK2Q9H093 628 aa12.18□□□□□ -0.46
VAPB-202ENST00000395802 RACGAP1Q9H0H5 632 aa12.18□□□□□ -0.46
VAPB-202ENST00000395802 MED20Q9H944 212 aa12.18□□□□□ -0.46
VAPB-202ENST00000395802 CALHM2Q9HA72 323 aa12.18□□□□□ -0.46
VAPB-202ENST00000395802 BCO1Q9HAY6 547 aa12.18□□□□□ -0.46
VAPB-202ENST00000395802 SRA1Q9HD15 236 aaKnown RBP12.18□□□□□ -0.46
VAPB-202ENST00000395802 B3GAT2Q9NPZ5 323 aa12.18□□□□□ -0.46
VAPB-202ENST00000395802 INPP5EQ9NRR6 644 aa12.18□□□□□ -0.46
VAPB-202ENST00000395802 LUZP4Q9P127 313 aa12.18□□□□□ -0.46
VAPB-202ENST00000395802 TNFRSF10DQ9UBN6 386 aa12.18□□□□□ -0.46
VAPB-202ENST00000395802 ERGIC3Q9Y282 383 aa12.18□□□□□ -0.46
VAPB-202ENST00000395802 SLC16A7O60669 478 aa12.17□□□□□ -0.46
VAPB-202ENST00000395802 WDR1O75083 606 aa12.17□□□□□ -0.46
VAPB-202ENST00000395802 MRPL33O75394 65 aaKnown RBP12.17□□□□□ -0.46
VAPB-202ENST00000395802 INMTO95050 263 aa12.17□□□□□ -0.46
VAPB-202ENST00000395802 YES1P07947 543 aa12.17□□□□□ -0.46
VAPB-202ENST00000395802 STSP08842 583 aa12.17□□□□□ -0.46
VAPB-202ENST00000395802 ADRA2AP08913 450 aa12.17□□□□□ -0.46
VAPB-202ENST00000395802 PGA4P0DJD7 388 aa12.17□□□□□ -0.46
VAPB-202ENST00000395802 PGA3P0DJD8 388 aa12.17□□□□□ -0.46
VAPB-202ENST00000395802 CSNK1A1P48729 337 aa12.17□□□□□ -0.46
VAPB-202ENST00000395802 GP2P55259 537 aaKnown RBP12.17□□□□□ -0.46
VAPB-202ENST00000395802 RBPJQ06330 500 aa12.17□□□□□ -0.46
VAPB-202ENST00000395802 CAMK2DQ13557 499 aa12.17□□□□□ -0.46
VAPB-202ENST00000395802 CNPY1Q3B7I2 92 aa12.17□□□□□ -0.46
VAPB-202ENST00000395802 ZNF324BQ6AW86 544 aaPredicted RBP12.17□□□□□ -0.46
VAPB-202ENST00000395802 AAED1Q7RTV5 226 aa12.17□□□□□ -0.46
VAPB-202ENST00000395802 OR6V1Q8N148 313 aa12.17□□□□□ -0.46
VAPB-202ENST00000395802 CISD2Q8N5K1 135 aaKnown RBP12.17□□□□□ -0.46
VAPB-202ENST00000395802 SYT14Q8NB59 555 aa12.17□□□□□ -0.46
VAPB-202ENST00000395802 OR6N1Q8NGY5 312 aa12.17□□□□□ -0.46
VAPB-202ENST00000395802 ABHD3Q8WU67 409 aa12.17□□□□□ -0.46
VAPB-202ENST00000395802 FCGR1BQ92637 280 aa12.17□□□□□ -0.46
VAPB-202ENST00000395802 CNN2Q99439 309 aaKnown RBP12.17□□□□□ -0.46
VAPB-202ENST00000395802 MNTQ99583 582 aa12.17□□□□□ -0.46
VAPB-202ENST00000395802 EMC6Q9BV81 110 aa12.17□□□□□ -0.46
VAPB-202ENST00000395802 HCAR1Q9BXC0 346 aa12.17□□□□□ -0.46
VAPB-202ENST00000395802 CDCA4Q9BXL8 241 aa12.17□□□□□ -0.46
VAPB-202ENST00000395802 FGF20Q9NP95 211 aaPredicted RBP12.17□□□□□ -0.46
VAPB-202ENST00000395802 DIMT1Q9UNQ2 313 aaKnown RBP12.17□□□□□ -0.46
VAPB-202ENST00000395802 B9D1Q9UPM9 204 aa12.17□□□□□ -0.46
VAPB-202ENST00000395802 EXOGQ9Y2C4 368 aaKnown RBP12.17□□□□□ -0.46
VAPB-202ENST00000395802 NOSIPQ9Y314 301 aaKnown RBP12.17□□□□□ -0.46
VAPB-202ENST00000395802 EXOSC1Q9Y3B2 195 aaKnown RBP12.17□□□□□ -0.46
VAPB-202ENST00000395802 MAP1BP46821 2468 aaKnown RBP12.17□□□□□ -0.46
VAPB-202ENST00000395802 CCDC160A6NGH7 325 aa12.16□□□□□ -0.46
VAPB-202ENST00000395802 ZNF99A8MXY4 864 aaPredicted RBP12.16□□□□□ -0.46
VAPB-202ENST00000395802 H7C1C5 153 aa12.16□□□□□ -0.46
VAPB-202ENST00000395802 KHDRBS3O75525 346 aaKnown RBP12.16□□□□□ -0.46
VAPB-202ENST00000395802 GSTT1P30711 240 aa12.16□□□□□ -0.46
VAPB-202ENST00000395802 LCN6P62502 163 aa12.16□□□□□ -0.46
VAPB-202ENST00000395802 IRF3Q14653 427 aa12.16□□□□□ -0.46
VAPB-202ENST00000395802 ADGRE4PQ86SQ3 457 aa12.16□□□□□ -0.46
VAPB-202ENST00000395802 OR51G2Q8NGK0 314 aa12.16□□□□□ -0.46
VAPB-202ENST00000395802 WNT2BQ93097 391 aa12.16□□□□□ -0.46
VAPB-202ENST00000395802 LGALS12Q96DT0 336 aa12.16□□□□□ -0.46
VAPB-202ENST00000395802 MRPL48Q96GC5 212 aaKnown RBP12.16□□□□□ -0.46
VAPB-202ENST00000395802 GMPPAQ96IJ6 420 aaPredicted RBP12.16□□□□□ -0.46
VAPB-202ENST00000395802 TM9SF2Q99805 663 aa12.16□□□□□ -0.46
VAPB-202ENST00000395802 PIEZO2Q9H5I5 2752 aa12.16□□□□□ -0.46
VAPB-202ENST00000395802 ZNF432O94892 652 aa12.16□□□□□ -0.46
VAPB-202ENST00000395802 HLA-DQA2P01906 255 aa12.16□□□□□ -0.46
VAPB-202ENST00000395802 GYPBP06028 91 aa12.16□□□□□ -0.46
VAPB-202ENST00000395802 SBK2P0C263 348 aa12.16□□□□□ -0.46
VAPB-202ENST00000395802 CLUP10909 449 aa12.16□□□□□ -0.46
VAPB-202ENST00000395802 CAPZA2P47755 286 aa12.16□□□□□ -0.46
VAPB-202ENST00000395802 RUNX1T1Q06455 604 aa12.16□□□□□ -0.46
VAPB-202ENST00000395802 C3AR1Q16581 482 aa12.16□□□□□ -0.46
VAPB-202ENST00000395802 HIST3H3Q16695 136 aa12.16□□□□□ -0.46
VAPB-202ENST00000395802 EIF2S3LQ2VIR3 472 aaKnown RBP12.16□□□□□ -0.46
VAPB-202ENST00000395802 SYT6Q5T7P8 510 aaPredicted RBP12.16□□□□□ -0.46
VAPB-202ENST00000395802 UBE2UQ5VVX9 321 aa12.16□□□□□ -0.46
VAPB-202ENST00000395802 CLVS1Q8IUQ0 354 aaPredicted RBP12.16□□□□□ -0.46
VAPB-202ENST00000395802 RORBQ92753 470 aa12.16□□□□□ -0.46
VAPB-202ENST00000395802 CRELD1Q96HD1 420 aa12.16□□□□□ -0.46
VAPB-202ENST00000395802 ZNF385AQ96PM9 386 aaKnown RBP12.16□□□□□ -0.46
VAPB-202ENST00000395802 OR2M2Q96R28 347 aa12.16□□□□□ -0.46
VAPB-202ENST00000395802 SLX1AQ9BQ83 275 aa12.16□□□□□ -0.46
VAPB-202ENST00000395802 JAM3Q9BX67 310 aa12.16□□□□□ -0.46
VAPB-202ENST00000395802 RERGLQ9H628 205 aa12.16□□□□□ -0.46
VAPB-202ENST00000395802 GLTPQ9NZD2 209 aa12.16□□□□□ -0.46
VAPB-202ENST00000395802 RSL24D1Q9UHA3 163 aaKnown RBP12.16□□□□□ -0.46
VAPB-202ENST00000395802 TMEM14AQ9Y6G1 99 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 101.1 ms