RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 ADGRG3Q86Y34 549 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 ZC3H3Q8IXZ2 948 aaKnown RBP3.73□□□□□ -1.81
USH2A-202ENST00000366942 C8orf59Q8N0T1 100 aaPredicted RBP3.73□□□□□ -1.81
USH2A-202ENST00000366942 LILRA2Q8N149 483 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 C17orf53Q8N3J3 647 aaPredicted RBP3.73□□□□□ -1.81
USH2A-202ENST00000366942 OR2A12Q8NGT7 310 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 CCDC120Q96HB5 630 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 DDOQ99489 341 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 NUDT22Q9BRQ3 303 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 C1orf50Q9BV19 199 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 TINAGL1Q9GZM7 467 aaPredicted RBP3.73□□□□□ -1.81
USH2A-202ENST00000366942 DERL2Q9GZP9 239 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 RABL2AQ9UBK7 228 aaPredicted RBP3.73□□□□□ -1.81
USH2A-202ENST00000366942 RABL2BQ9UNT1 228 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 hCG_1818297A0A087WSY0 165 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 PGPA6NDG6 321 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 UNC119BA6NIH7 251 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 PLPP1O14494 284 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 DEGS1O15121 323 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 RPP14O95059 124 aaKnown RBP3.73□□□□□ -1.81
USH2A-202ENST00000366942 HPXP02790 462 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 F8A1P23610 371 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 CDK2P24941 298 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 PSMA1P25786 263 aaKnown RBP3.73□□□□□ -1.81
USH2A-202ENST00000366942 ADRA1AP35348 466 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 KIR3DL2P43630 455 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 SLC9A3P48764 834 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 WNT7BP56706 349 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 RUNDC3AQ59EK9 446 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 RIPPLY2Q5TAB7 128 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 NAIF1Q69YI7 327 aaPredicted RBP3.73□□□□□ -1.81
USH2A-202ENST00000366942 CCDC71Q8IV32 467 aaPredicted RBP3.73□□□□□ -1.81
USH2A-202ENST00000366942 CROCCP3Q8IVE0 287 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 FAM57AQ8TBR7 257 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 RASD2Q96D21 266 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 KTI12Q96EK9 354 aaPredicted RBP3.73□□□□□ -1.81
USH2A-202ENST00000366942 PDXPQ96GD0 296 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 ADTRPQ96IZ2 230 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 SLC22A12Q96S37 553 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 C20orf24Q9BUV8 137 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 RGCCQ9H4X1 137 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 CXorf21Q9HAI6 301 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 APOBEC3GQ9HC16 384 aaKnown RBP3.73□□□□□ -1.81
USH2A-202ENST00000366942 MARCH5Q9NX47 278 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 KIF25Q9UIL4 384 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 ZNF391Q9UJN7 358 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 ZNF225Q9UK10 706 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 KLK13Q9UKR3 277 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 NPTNQ9Y639 398 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 IGLV3-22A0A075B6J6 115 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 PPIAL4EA0A075B759 164 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 PPIAL4DF5H284 164 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 H0Y980 276 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 MRPS14O60783 128 aaKnown RBP3.73□□□□□ -1.81
USH2A-202ENST00000366942 PPIAL4FP0DN26 164 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 SDC1P18827 310 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 CD22P20273 847 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 RAB3AP20336 220 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 FPR3P25089 353 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 OPRD1P41143 372 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 CX3CR1P49238 355 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 SLC25A3Q00325 362 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 Q5PR19 223 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 SYPL2Q5VXT5 272 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 HAGHLQ6PII5 290 aaPredicted RBP3.73□□□□□ -1.81
USH2A-202ENST00000366942 DCDC5Q6ZRR9 648 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 ZSWIM9Q86XI8 627 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 ERI1Q8IV48 349 aaKnown RBP3.73□□□□□ -1.81
USH2A-202ENST00000366942 SPARTQ8N0X7 666 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 RFLNBQ8N5W9 214 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 IQCF1Q8N6M8 205 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 OR2AK2Q8NG84 335 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 OR5D18Q8NGL1 313 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 FANK1Q8TC84 345 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 SGK3Q96BR1 496 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 NEIL1Q96FI4 390 aaPredicted RBP3.73□□□□□ -1.81
USH2A-202ENST00000366942 CCDC32Q9BV29 185 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 ZNF286AQ9HBT8 521 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 GCM1Q9NP62 436 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 SIRT3Q9NTG7 399 aaPredicted RBP3.73□□□□□ -1.81
USH2A-202ENST00000366942 OR6C3Q9NZP0 311 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 NPAP1Q9NZP6 1156 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 IL17CQ9P0M4 197 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 RNF7Q9UBF6 113 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 CACNG4Q9UBN1 327 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 FOXJ3Q9UPW0 622 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 PPIAL4AQ9Y536 164 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 TMED7-TICAM2A0A0A6YYA0 188 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 FAM230AA0A1W2PPH8 454 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 A8MXE2 369 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 hCG_2039718K7EN88 272 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 SEMG1P04279 462 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 GNAO1P09471 354 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 AQP1P29972 269 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 VDAC2P45880 294 aaPredicted RBP3.73□□□□□ -1.81
USH2A-202ENST00000366942 HINT1P49773 126 aaPredicted RBP3.73□□□□□ -1.81
USH2A-202ENST00000366942 MEOX2P50222 304 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 TMEM33P57088 247 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 COL19A1Q14993 1142 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 EMG1Q92979 244 aaKnown RBP3.73□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms