RNA–Protein interactions for RNA: ENST00000621181.4

CLK1-215, Transcript of CDC like kinase 1, humanhuman

TSL 1 (best) BASIC

Gene CLK1, Length 1,843 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-215ENST00000621181 TCF21O43680 179 aa6.85□□□□□ -1.31
CLK1-215ENST00000621181 HPCAL1P37235 193 aa6.85□□□□□ -1.31
CLK1-215ENST00000621181 MAGEA2P43356 314 aa6.85□□□□□ -1.31
CLK1-215ENST00000621181 ASMTP46597 345 aa6.85□□□□□ -1.31
CLK1-215ENST00000621181 CCT3P49368 545 aaKnown RBP6.85□□□□□ -1.31
CLK1-215ENST00000621181 TMBIM6P55061 237 aa6.85□□□□□ -1.31
CLK1-215ENST00000621181 CLDN8P56748 225 aa6.85□□□□□ -1.31
CLK1-215ENST00000621181 ISL1P61371 349 aa6.85□□□□□ -1.31
CLK1-215ENST00000621181 TGFBR3Q03167 851 aa6.85□□□□□ -1.31
CLK1-215ENST00000621181 MAD2L1Q13257 205 aaPredicted RBP6.85□□□□□ -1.31
CLK1-215ENST00000621181 CR1LQ2VPA4 569 aa6.85□□□□□ -1.31
CLK1-215ENST00000621181 ZIK1Q3SY52 487 aaPredicted RBP6.85□□□□□ -1.31
CLK1-215ENST00000621181 GTDC1Q4AE62 458 aa6.85□□□□□ -1.31
CLK1-215ENST00000621181 FGD3Q5JSP0 725 aa6.85□□□□□ -1.31
CLK1-215ENST00000621181 EXOSC6Q5RKV6 272 aaKnown RBP6.85□□□□□ -1.31
CLK1-215ENST00000621181 RBM48Q5RL73 367 aaKnown RBP6.85□□□□□ -1.31
CLK1-215ENST00000621181 OTUD3Q5T2D3 398 aaPredicted RBP6.85□□□□□ -1.31
CLK1-215ENST00000621181 GPR107Q5VW38 600 aa6.85□□□□□ -1.31
CLK1-215ENST00000621181 CASP12Q6UXS9 341 aa6.85□□□□□ -1.31
CLK1-215ENST00000621181 MICU2Q8IYU8 434 aa6.85□□□□□ -1.31
CLK1-215ENST00000621181 SVOPLQ8N434 492 aa6.85□□□□□ -1.31
CLK1-215ENST00000621181 OR56A1Q8NGH5 318 aa6.85□□□□□ -1.31
CLK1-215ENST00000621181 OR10A6Q8NH74 314 aa6.85□□□□□ -1.31
CLK1-215ENST00000621181 PIGXQ8TBF5 258 aa6.85□□□□□ -1.31
CLK1-215ENST00000621181 ST8SIA1Q92185 356 aa6.85□□□□□ -1.31
CLK1-215ENST00000621181 SGCDQ92629 289 aa6.85□□□□□ -1.31
CLK1-215ENST00000621181 MTERF3Q96E29 417 aa6.85□□□□□ -1.31
CLK1-215ENST00000621181 FBXO17Q96EF6 278 aa6.85□□□□□ -1.31
CLK1-215ENST00000621181 DNAJA3Q96EY1 480 aa6.85□□□□□ -1.31
CLK1-215ENST00000621181 FOXN4Q96NZ1 517 aa6.85□□□□□ -1.31
CLK1-215ENST00000621181 SORCS2Q96PQ0 1159 aa6.85□□□□□ -1.31
CLK1-215ENST00000621181 VRK1Q99986 396 aaPredicted RBP6.85□□□□□ -1.31
CLK1-215ENST00000621181 THUMPD3Q9BV44 507 aaKnown RBP6.85□□□□□ -1.31
CLK1-215ENST00000621181 SMURF2Q9HAU4 748 aa6.85□□□□□ -1.31
CLK1-215ENST00000621181 UPB1Q9UBR1 384 aa6.85□□□□□ -1.31
CLK1-215ENST00000621181 TMED5Q9Y3A6 229 aa6.85□□□□□ -1.31
CLK1-215ENST00000621181 KCNE3Q9Y6H6 103 aa6.85□□□□□ -1.31
CLK1-215ENST00000621181 IGHV4-61A0A0C4DH41 118 aa6.84□□□□□ -1.31
CLK1-215ENST00000621181 LOC390937A0A1W2PQ73 354 aa6.84□□□□□ -1.31
CLK1-215ENST00000621181 ELOVL7A1L3X0 281 aa6.84□□□□□ -1.31
CLK1-215ENST00000621181 SERINC4A6NH21 518 aa6.84□□□□□ -1.31
CLK1-215ENST00000621181 VWC2LB2RUY7 222 aa6.84□□□□□ -1.31
CLK1-215ENST00000621181 NPIPB9F8W1W9 429 aa6.84□□□□□ -1.31
CLK1-215ENST00000621181 G3V2T6 193 aa6.84□□□□□ -1.31
CLK1-215ENST00000621181 ETV2O00321 342 aaPredicted RBP6.84□□□□□ -1.31
CLK1-215ENST00000621181 CXCR6O00574 342 aa6.84□□□□□ -1.31
CLK1-215ENST00000621181 SLC16A6O15403 523 aa6.84□□□□□ -1.31
CLK1-215ENST00000621181 CSTAP01040 98 aa6.84□□□□□ -1.31
CLK1-215ENST00000621181 SEMG1P04279 462 aa6.84□□□□□ -1.31
CLK1-215ENST00000621181 ITGA5P08648 1049 aa6.84□□□□□ -1.31
CLK1-215ENST00000621181 PGCP20142 388 aa6.84□□□□□ -1.31
CLK1-215ENST00000621181 GABARAPL2P60520 117 aa6.84□□□□□ -1.31
CLK1-215ENST00000621181 SNRPD2P62316 118 aaKnown RBP6.84□□□□□ -1.31
CLK1-215ENST00000621181 SKP2Q13309 424 aa6.84□□□□□ -1.31
CLK1-215ENST00000621181 LAPTM4AQ15012 233 aa6.84□□□□□ -1.31
CLK1-215ENST00000621181 GPR68Q15743 365 aa6.84□□□□□ -1.31
CLK1-215ENST00000621181 GABRA6Q16445 453 aa6.84□□□□□ -1.31
CLK1-215ENST00000621181 DPY19L1Q2PZI1 675 aa6.84□□□□□ -1.31
CLK1-215ENST00000621181 C6orf141Q5SZD1 244 aa6.84□□□□□ -1.31
CLK1-215ENST00000621181 TTC23Q5W5X9 447 aa6.84□□□□□ -1.31
CLK1-215ENST00000621181 KLHL24Q6TFL4 600 aa6.84□□□□□ -1.31
CLK1-215ENST00000621181 SLC46A3Q7Z3Q1 461 aa6.84□□□□□ -1.31
CLK1-215ENST00000621181 HOMEZQ8IX15 550 aa6.84□□□□□ -1.31
CLK1-215ENST00000621181 HS3ST5Q8IZT8 346 aa6.84□□□□□ -1.31
CLK1-215ENST00000621181 SPARTQ8N0X7 666 aa6.84□□□□□ -1.31
CLK1-215ENST00000621181 RFLNBQ8N5W9 214 aa6.84□□□□□ -1.31
CLK1-215ENST00000621181 ZNF540Q8NDQ6 660 aa6.84□□□□□ -1.31
CLK1-215ENST00000621181 OR7A2PQ8NGA2 310 aa6.84□□□□□ -1.31
CLK1-215ENST00000621181 TESCQ96BS2 214 aa6.84□□□□□ -1.31
CLK1-215ENST00000621181 ZBTB18Q99592 522 aa6.84□□□□□ -1.31
CLK1-215ENST00000621181 KCNS3Q9BQ31 491 aa6.84□□□□□ -1.31
CLK1-215ENST00000621181 DPY30Q9C005 99 aa6.84□□□□□ -1.31
CLK1-215ENST00000621181 BPESC1Q9GZL8 116 aa6.84□□□□□ -1.31
CLK1-215ENST00000621181 GABARAPL1Q9H0R8 117 aa6.84□□□□□ -1.31
CLK1-215ENST00000621181 MYOZ1Q9NP98 299 aaPredicted RBP6.84□□□□□ -1.31
CLK1-215ENST00000621181 VNN3Q9NY84 501 aa6.84□□□□□ -1.31
CLK1-215ENST00000621181 CHRNA9Q9UGM1 479 aa6.84□□□□□ -1.31
CLK1-215ENST00000621181 MOKQ9UQ07 419 aa6.84□□□□□ -1.31
CLK1-215ENST00000621181 PCDHB14Q9Y5E9 798 aa6.84□□□□□ -1.31
CLK1-215ENST00000621181 SPIN1Q9Y657 262 aaPredicted RBP6.84□□□□□ -1.31
CLK1-215ENST00000621181 ZNF716A6NP11 495 aa6.83□□□□□ -1.32
CLK1-215ENST00000621181 SCAMP2O15127 329 aaKnown RBP6.83□□□□□ -1.32
CLK1-215ENST00000621181 SCN2BO60939 215 aa6.83□□□□□ -1.32
CLK1-215ENST00000621181 LAMP1P11279 417 aa6.83□□□□□ -1.32
CLK1-215ENST00000621181 HOXB6P17509 224 aaKnown RBP6.83□□□□□ -1.32
CLK1-215ENST00000621181 PCMT1P22061 227 aa6.83□□□□□ -1.32
CLK1-215ENST00000621181 NTF4P34130 210 aa6.83□□□□□ -1.32
CLK1-215ENST00000621181 SRP14P37108 136 aaKnown RBP6.83□□□□□ -1.32
CLK1-215ENST00000621181 RPL3P39023 403 aaKnown RBP6.83□□□□□ -1.32
CLK1-215ENST00000621181 MAGEA8P43361 318 aa6.83□□□□□ -1.32
CLK1-215ENST00000621181 FOXG1P55316 489 aaPredicted RBP6.83□□□□□ -1.32
CLK1-215ENST00000621181 CD47Q08722 323 aa6.83□□□□□ -1.32
CLK1-215ENST00000621181 ZNF829Q3KNS6 432 aaPredicted RBP6.83□□□□□ -1.32
CLK1-215ENST00000621181 ANKDD1AQ495B1 522 aa6.83□□□□□ -1.32
CLK1-215ENST00000621181 BHLHB9Q6PI77 547 aa6.83□□□□□ -1.32
CLK1-215ENST00000621181 C12orf54Q6X4T0 127 aa6.83□□□□□ -1.32
CLK1-215ENST00000621181 SLC16A12Q6ZSM3 486 aa6.83□□□□□ -1.32
CLK1-215ENST00000621181 MSANTD1Q6ZTZ1 278 aa6.83□□□□□ -1.32
CLK1-215ENST00000621181 ZDHHC13Q8IUH4 622 aa6.83□□□□□ -1.32
CLK1-215ENST00000621181 CCDC103Q8IW40 242 aa6.83□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 147.9 ms