RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 TXNIPQ9H3M7 391 aa26.2■■□□□ 1.79
LIMCH1-211ENST00000509638 SMURF2Q9HAU4 748 aa26.2■■□□□ 1.79
LIMCH1-211ENST00000509638 CD14P08571 375 aa26.2■■□□□ 1.78
LIMCH1-211ENST00000509638 SLC6A6P31641 620 aa26.2■■□□□ 1.78
LIMCH1-211ENST00000509638 ASCL1P50553 236 aa26.2■■□□□ 1.78
LIMCH1-211ENST00000509638 DAPP51397 102 aa26.2■■□□□ 1.78
LIMCH1-211ENST00000509638 ERVK-25P63136 954 aa26.2■■□□□ 1.78
LIMCH1-211ENST00000509638 RFX4Q33E94 735 aa26.2■■□□□ 1.78
LIMCH1-211ENST00000509638 CARD17Q5XLA6 110 aa26.2■■□□□ 1.78
LIMCH1-211ENST00000509638 CLDN22Q8N7P3 220 aa26.2■■□□□ 1.78
LIMCH1-211ENST00000509638 OR52L1Q8NGH7 329 aa26.2■■□□□ 1.78
LIMCH1-211ENST00000509638 ASB10Q8WXI3 467 aa26.2■■□□□ 1.78
LIMCH1-211ENST00000509638 SLCO5A1Q9H2Y9 848 aa26.2■■□□□ 1.78
LIMCH1-211ENST00000509638 TBC1D23Q9NUY8 699 aa26.2■■□□□ 1.78
LIMCH1-211ENST00000509638 IGFBP1P08833 259 aaPredicted RBP26.19■■□□□ 1.78
LIMCH1-211ENST00000509638 SLC36A3Q495N2 470 aa26.19■■□□□ 1.78
LIMCH1-211ENST00000509638 CLEC12AQ5QGZ9 265 aa26.19■■□□□ 1.78
LIMCH1-211ENST00000509638 OR8D4Q8NGM9 314 aa26.19■■□□□ 1.78
LIMCH1-211ENST00000509638 OR6X1Q8NH79 312 aa26.19■■□□□ 1.78
LIMCH1-211ENST00000509638 DNAJC9Q8WXX5 260 aa26.19■■□□□ 1.78
LIMCH1-211ENST00000509638 ADAD1Q96M93 576 aaKnown RBP26.19■■□□□ 1.78
LIMCH1-211ENST00000509638 PAPOLBQ9NRJ5 636 aaKnown RBP26.19■■□□□ 1.78
LIMCH1-211ENST00000509638 IL20Q9NYY1 176 aa26.19■■□□□ 1.78
LIMCH1-211ENST00000509638 REV1Q9UBZ9 1251 aa26.19■■□□□ 1.78
LIMCH1-211ENST00000509638 ZNF726A6NNF4 738 aa26.18■■□□□ 1.78
LIMCH1-211ENST00000509638 A8MXE2 369 aa26.18■■□□□ 1.78
LIMCH1-211ENST00000509638 SLC43A1O75387 559 aa26.18■■□□□ 1.78
LIMCH1-211ENST00000509638 TP53P04637 393 aaPredicted RBP26.18■■□□□ 1.78
LIMCH1-211ENST00000509638 RPL27P61353 136 aaKnown RBP26.18■■□□□ 1.78
LIMCH1-211ENST00000509638 LGALS3BPQ08380 585 aa26.18■■□□□ 1.78
LIMCH1-211ENST00000509638 CAMK2DQ13557 499 aa26.18■■□□□ 1.78
LIMCH1-211ENST00000509638 ARMC4Q5T2S8 1044 aa26.18■■□□□ 1.78
LIMCH1-211ENST00000509638 TSPO2Q5TGU0 170 aa26.18■■□□□ 1.78
LIMCH1-211ENST00000509638 ZNF474Q6S9Z5 364 aaPredicted RBP26.18■■□□□ 1.78
LIMCH1-211ENST00000509638 DPY19L2P2Q6ZN68 376 aa26.18■■□□□ 1.78
LIMCH1-211ENST00000509638 HDDC2Q7Z4H3 204 aa26.18■■□□□ 1.78
LIMCH1-211ENST00000509638 UBE2J2Q8N2K1 259 aa26.18■■□□□ 1.78
LIMCH1-211ENST00000509638 ALKBH3Q96Q83 286 aaPredicted RBP26.18■■□□□ 1.78
LIMCH1-211ENST00000509638 IFT27Q9BW83 186 aa26.18■■□□□ 1.78
LIMCH1-211ENST00000509638 DCLRE1BQ9H816 532 aa26.18■■□□□ 1.78
LIMCH1-211ENST00000509638 KCNJ16Q9NPI9 418 aa26.18■■□□□ 1.78
LIMCH1-211ENST00000509638 NRIP3Q9NQ35 241 aa26.18■■□□□ 1.78
LIMCH1-211ENST00000509638 KRT84Q9NSB2 600 aa26.18■■□□□ 1.78
LIMCH1-211ENST00000509638 POFUT2Q9Y2G5 429 aa26.18■■□□□ 1.78
LIMCH1-211ENST00000509638 HCFC1P51610 2035 aa26.17■■□□□ 1.78
LIMCH1-211ENST00000509638 PPP1R3DO95685 299 aa26.17■■□□□ 1.78
LIMCH1-211ENST00000509638 PPP2R2BQ00005 443 aa26.17■■□□□ 1.78
LIMCH1-211ENST00000509638 FAM122BQ7Z309 247 aa26.17■■□□□ 1.78
LIMCH1-211ENST00000509638 ZNF570Q96NI8 536 aa26.17■■□□□ 1.78
LIMCH1-211ENST00000509638 SLC7A10Q9NS82 523 aa26.17■■□□□ 1.78
LIMCH1-211ENST00000509638 MALT1Q9UDY8 824 aa26.17■■□□□ 1.78
LIMCH1-211ENST00000509638 ZNF346Q9UL40 294 aaKnown RBP26.17■■□□□ 1.78
LIMCH1-211ENST00000509638 H3BN98 237 aa26.16■■□□□ 1.78
LIMCH1-211ENST00000509638 FBXW9Q5XUX1 488 aa26.16■■□□□ 1.78
LIMCH1-211ENST00000509638 KDM4DQ6B0I6 523 aa26.16■■□□□ 1.78
LIMCH1-211ENST00000509638 ZNF519Q8TB69 540 aa26.16■■□□□ 1.78
LIMCH1-211ENST00000509638 SLC25A44Q96H78 314 aaPredicted RBP26.16■■□□□ 1.78
LIMCH1-211ENST00000509638 RBM24Q9BX46 236 aaKnown RBP26.16■■□□□ 1.78
LIMCH1-211ENST00000509638 GRHPRQ9UBQ7 328 aa26.16■■□□□ 1.78
LIMCH1-211ENST00000509638 USP9YO00507 2555 aaPredicted RBP26.16■■□□□ 1.78
LIMCH1-211ENST00000509638 EI24O14681 340 aa26.16■■□□□ 1.78
LIMCH1-211ENST00000509638 IGFBP5P24593 272 aa26.16■■□□□ 1.78
LIMCH1-211ENST00000509638 RUNX1T1Q06455 604 aa26.16■■□□□ 1.78
LIMCH1-211ENST00000509638 Q6ZT83 130 aa26.16■■□□□ 1.78
LIMCH1-211ENST00000509638 POMGNT2Q8NAT1 580 aa26.16■■□□□ 1.78
LIMCH1-211ENST00000509638 TEX47Q8TBZ9 253 aa26.16■■□□□ 1.78
LIMCH1-211ENST00000509638 ZNF566Q969W8 418 aa26.16■■□□□ 1.78
LIMCH1-211ENST00000509638 EME1Q96AY2 570 aa26.16■■□□□ 1.78
LIMCH1-211ENST00000509638 Q96M85 177 aa26.16■■□□□ 1.78
LIMCH1-211ENST00000509638 RBM4BQ9BQ04 359 aaKnown RBP26.16■■□□□ 1.78
LIMCH1-211ENST00000509638 C9orf16Q9BUW7 83 aa26.16■■□□□ 1.78
LIMCH1-211ENST00000509638 RBM4Q9BWF3 364 aaKnown RBP26.16■■□□□ 1.78
LIMCH1-211ENST00000509638 GALNT8Q9NY28 637 aa26.16■■□□□ 1.78
LIMCH1-211ENST00000509638 STX18Q9P2W9 335 aaKnown RBP26.16■■□□□ 1.78
LIMCH1-211ENST00000509638 UPB1Q9UBR1 384 aa26.16■■□□□ 1.78
LIMCH1-211ENST00000509638 IER3IP1Q9Y5U9 82 aa26.16■■□□□ 1.78
LIMCH1-211ENST00000509638 TEX13CA0A0J9YWL9 993 aa26.15■■□□□ 1.78
LIMCH1-211ENST00000509638 OR6C65A6NJZ3 312 aa26.15■■□□□ 1.78
LIMCH1-211ENST00000509638 UPK3AO75631 287 aa26.15■■□□□ 1.78
LIMCH1-211ENST00000509638 IGHG1P01857 330 aa26.15■■□□□ 1.78
LIMCH1-211ENST00000509638 PGA4P0DJD7 388 aa26.15■■□□□ 1.78
LIMCH1-211ENST00000509638 PGA3P0DJD8 388 aa26.15■■□□□ 1.78
LIMCH1-211ENST00000509638 OSMP13725 252 aa26.15■■□□□ 1.78
LIMCH1-211ENST00000509638 SDHAP31040 664 aa26.15■■□□□ 1.78
LIMCH1-211ENST00000509638 ACVR1BP36896 505 aa26.15■■□□□ 1.78
LIMCH1-211ENST00000509638 TFF3Q07654 80 aa26.15■■□□□ 1.78
LIMCH1-211ENST00000509638 FBXL19-AS1Q494R0 122 aa26.15■■□□□ 1.78
LIMCH1-211ENST00000509638 FAM205BPQ63HN1 556 aa26.15■■□□□ 1.78
LIMCH1-211ENST00000509638 BEND4Q6ZU67 534 aa26.15■■□□□ 1.78
LIMCH1-211ENST00000509638 PARP8Q8N3A8 854 aa26.15■■□□□ 1.78
LIMCH1-211ENST00000509638 CBR4Q8N4T8 237 aa26.15■■□□□ 1.78
LIMCH1-211ENST00000509638 NOXO1Q8NFA2 376 aa26.15■■□□□ 1.78
LIMCH1-211ENST00000509638 MAGEE2Q8TD90 523 aaPredicted RBP26.15■■□□□ 1.78
LIMCH1-211ENST00000509638 RASD2Q96D21 266 aa26.15■■□□□ 1.78
LIMCH1-211ENST00000509638 ERMAPQ96PL5 475 aaPredicted RBP26.15■■□□□ 1.78
LIMCH1-211ENST00000509638 OSBPL10Q9BXB5 764 aa26.15■■□□□ 1.78
LIMCH1-211ENST00000509638 TMEFF2Q9UIK5 374 aaPredicted RBP26.15■■□□□ 1.78
LIMCH1-211ENST00000509638 FOXD3Q9UJU5 478 aaPredicted RBP26.15■■□□□ 1.78
LIMCH1-211ENST00000509638 RRP15Q9Y3B9 282 aaKnown RBP26.15■■□□□ 1.78
LIMCH1-211ENST00000509638 MITFO75030 526 aaPredicted RBP26.14■■□□□ 1.78
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms