RNA–Protein interactions for RNA: ENST00000493829.5

USP39-218, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 1,660 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-218ENST00000493829 PRRG3Q9BZD7 231 aa17.22■□□□□ 0.35
USP39-218ENST00000493829 EMC3Q9P0I2 261 aa17.22■□□□□ 0.35
USP39-218ENST00000493829 RNF6Q9Y252 685 aa17.22■□□□□ 0.35
USP39-218ENST00000493829 KMT2BQ9UMN6 2715 aaPredicted RBP17.22■□□□□ 0.35
USP39-218ENST00000493829 GTF3C1Q12789 2109 aa17.21■□□□□ 0.35
USP39-218ENST00000493829 LOC102725191A0A1B0GVB3 256 aa17.21■□□□□ 0.35
USP39-218ENST00000493829 SLC35F4A4IF30 521 aa17.21■□□□□ 0.35
USP39-218ENST00000493829 ARPC3O15145 178 aa17.21■□□□□ 0.35
USP39-218ENST00000493829 HMGN1P05114 100 aa17.21■□□□□ 0.35
USP39-218ENST00000493829 PCYT1AP49585 367 aa17.21■□□□□ 0.35
USP39-218ENST00000493829 SELENOPP49908 381 aa17.21■□□□□ 0.35
USP39-218ENST00000493829 SLC16A1P53985 500 aa17.21■□□□□ 0.35
USP39-218ENST00000493829 CRMP1Q14194 572 aa17.21■□□□□ 0.35
USP39-218ENST00000493829 GPR139Q6DWJ6 353 aa17.21■□□□□ 0.35
USP39-218ENST00000493829 NHLRC1Q6VVB1 395 aa17.21■□□□□ 0.35
USP39-218ENST00000493829 B3GNT6Q6ZMB0 384 aa17.21■□□□□ 0.35
USP39-218ENST00000493829 SEM1Q6ZVN7 128 aa17.21■□□□□ 0.35
USP39-218ENST00000493829 BCDIN3DQ7Z5W3 292 aaKnown RBP17.21■□□□□ 0.35
USP39-218ENST00000493829 C8orf59Q8N0T1 100 aaPredicted RBP17.21■□□□□ 0.35
USP39-218ENST00000493829 ARIH2OSQ8N7S6 290 aa17.21■□□□□ 0.35
USP39-218ENST00000493829 WNT2BQ93097 391 aa17.21■□□□□ 0.35
USP39-218ENST00000493829 INTS12Q96CB8 462 aaKnown RBP17.21■□□□□ 0.35
USP39-218ENST00000493829 C12orf49Q9H741 205 aa17.21■□□□□ 0.35
USP39-218ENST00000493829 MED20Q9H944 212 aa17.21■□□□□ 0.35
USP39-218ENST00000493829 CMC2Q9NRP2 79 aa17.21■□□□□ 0.35
USP39-218ENST00000493829 RALYQ9UKM9 306 aaKnown RBP17.21■□□□□ 0.35
USP39-218ENST00000493829 OSGIN2Q9Y236 505 aa17.21■□□□□ 0.35
USP39-218ENST00000493829 NOSIPQ9Y314 301 aaKnown RBP17.21■□□□□ 0.35
USP39-218ENST00000493829 CD8B2A6NJW9 211 aa17.2■□□□□ 0.34
USP39-218ENST00000493829 TLX2O43763 284 aaPredicted RBP17.2■□□□□ 0.34
USP39-218ENST00000493829 IFNGP01579 166 aa17.2■□□□□ 0.34
USP39-218ENST00000493829 APEHP13798 732 aaKnown RBP17.2■□□□□ 0.34
USP39-218ENST00000493829 ZNF3P17036 446 aa17.2■□□□□ 0.34
USP39-218ENST00000493829 AGTR1P30556 359 aa17.2■□□□□ 0.34
USP39-218ENST00000493829 NTF4P34130 210 aa17.2■□□□□ 0.34
USP39-218ENST00000493829 PTGER4P35408 488 aa17.2■□□□□ 0.34
USP39-218ENST00000493829 CDKN2AP42771 156 aaKnown RBP17.2■□□□□ 0.34
USP39-218ENST00000493829 PER3P56645 1201 aa17.2■□□□□ 0.34
USP39-218ENST00000493829 TLE1Q04724 770 aa17.2■□□□□ 0.34
USP39-218ENST00000493829 LGALS3BPQ08380 585 aa17.2■□□□□ 0.34
USP39-218ENST00000493829 SF3B4Q15427 424 aaKnown RBP eCLIP17.2■□□□□ 0.343e-14■■■■■ 33.9
USP39-218ENST00000493829 AAED1Q7RTV5 226 aa17.2■□□□□ 0.34
USP39-218ENST00000493829 ENTHD1Q8IYW4 607 aa17.2■□□□□ 0.34
USP39-218ENST00000493829 SLC37A3Q8NCC5 494 aa17.2■□□□□ 0.34
USP39-218ENST00000493829 OR9Q1Q8NGQ5 310 aa17.2■□□□□ 0.34
USP39-218ENST00000493829 HDAC2Q92769 488 aaKnown RBP17.2■□□□□ 0.34
USP39-218ENST00000493829 OR2M2Q96R28 347 aa17.2■□□□□ 0.34
USP39-218ENST00000493829 ANKRD60Q9BZ19 345 aa17.2■□□□□ 0.34
USP39-218ENST00000493829 ZNF226Q9NYT6 803 aa17.2■□□□□ 0.34
USP39-218ENST00000493829 IGKV3D-15A0A087WSY6 115 aa17.2■□□□□ 0.34
USP39-218ENST00000493829 ZNF726A6NNF4 738 aa17.2■□□□□ 0.34
USP39-218ENST00000493829 TXNDC12O95881 172 aa17.2■□□□□ 0.34
USP39-218ENST00000493829 CD47Q08722 323 aa17.2■□□□□ 0.34
USP39-218ENST00000493829 GTF2IRD2BQ6EKJ0 949 aa17.2■□□□□ 0.34
USP39-218ENST00000493829 PLBD1Q6P4A8 553 aa17.2■□□□□ 0.34
USP39-218ENST00000493829 USP51Q70EK9 711 aa17.2■□□□□ 0.34
USP39-218ENST00000493829 GTF2IRD2Q86UP8 949 aa17.2■□□□□ 0.34
USP39-218ENST00000493829 DEPDC4Q8N2C3 294 aa17.2■□□□□ 0.34
USP39-218ENST00000493829 CNEP1R1Q8N9A8 125 aa17.2■□□□□ 0.34
USP39-218ENST00000493829 CNIH3Q8TBE1 160 aa17.2■□□□□ 0.34
USP39-218ENST00000493829 Q9H521 79 aa17.2■□□□□ 0.34
USP39-218ENST00000493829 RERGLQ9H628 205 aa17.2■□□□□ 0.34
USP39-218ENST00000493829 BCO1Q9HAY6 547 aa17.2■□□□□ 0.34
USP39-218ENST00000493829 DNAJC27Q9NZQ0 273 aa17.2■□□□□ 0.34
USP39-218ENST00000493829 KLHL21Q9UJP4 597 aa17.2■□□□□ 0.34
USP39-218ENST00000493829 ZGRF1Q86YA3 2104 aa17.19■□□□□ 0.34
USP39-218ENST00000493829 A6NIZ1 184 aa17.19■□□□□ 0.34
USP39-218ENST00000493829 GPR171O14626 319 aa17.19■□□□□ 0.34
USP39-218ENST00000493829 IDH3BO43837 385 aa17.19■□□□□ 0.34
USP39-218ENST00000493829 TRMUO75648 421 aaKnown RBP17.19■□□□□ 0.34
USP39-218ENST00000493829 TOXO94900 526 aa17.19■□□□□ 0.34
USP39-218ENST00000493829 IGHV3-9P01782 118 aa17.19■□□□□ 0.34
USP39-218ENST00000493829 YES1P07947 543 aa17.19■□□□□ 0.34
USP39-218ENST00000493829 ACADSP16219 412 aa17.19■□□□□ 0.34
USP39-218ENST00000493829 EDNRAP25101 427 aa17.19■□□□□ 0.34
USP39-218ENST00000493829 CLRN1P58418 232 aa17.19■□□□□ 0.34
USP39-218ENST00000493829 RAP1BP61224 184 aa17.19■□□□□ 0.34
USP39-218ENST00000493829 RAP1AP62834 184 aa17.19■□□□□ 0.34
USP39-218ENST00000493829 FMODQ06828 376 aa17.19■□□□□ 0.34
USP39-218ENST00000493829 FOXF2Q12947 444 aa17.19■□□□□ 0.34
USP39-218ENST00000493829 PDK3Q15120 406 aa17.19■□□□□ 0.34
USP39-218ENST00000493829 IGFBP7Q16270 282 aa17.19■□□□□ 0.34
USP39-218ENST00000493829 TMEM201Q5SNT2 666 aa17.19■□□□□ 0.34
USP39-218ENST00000493829 NUFIP2Q7Z417 695 aaKnown RBP17.19■□□□□ 0.34
USP39-218ENST00000493829 SETD9Q8NE22 299 aa17.19■□□□□ 0.34
USP39-218ENST00000493829 NOXO1Q8NFA2 376 aa17.19■□□□□ 0.34
USP39-218ENST00000493829 BBS1Q8NFJ9 593 aa17.19■□□□□ 0.34
USP39-218ENST00000493829 TMEM163Q8TC26 289 aa17.19■□□□□ 0.34
USP39-218ENST00000493829 GMPPAQ96IJ6 420 aaPredicted RBP17.19■□□□□ 0.34
USP39-218ENST00000493829 TM9SF2Q99805 663 aa17.19■□□□□ 0.34
USP39-218ENST00000493829 HCAR1Q9BXC0 346 aa17.19■□□□□ 0.34
USP39-218ENST00000493829 SYT4Q9H2B2 425 aa17.19■□□□□ 0.34
USP39-218ENST00000493829 HINT3Q9NQE9 182 aaKnown RBP17.19■□□□□ 0.34
USP39-218ENST00000493829 RPRD1BQ9NQG5 326 aaKnown RBP17.19■□□□□ 0.34
USP39-218ENST00000493829 PCDHGB5Q9Y5G0 923 aa17.19■□□□□ 0.34
USP39-218ENST00000493829 COL6A6A6NMZ7 2263 aa17.18■□□□□ 0.34
USP39-218ENST00000493829 OR6C68A6NDL8 312 aa17.18■□□□□ 0.34
USP39-218ENST00000493829 MBD3L4A6NDZ8 208 aaPredicted RBP17.18■□□□□ 0.34
USP39-218ENST00000493829 MBD3L3A6NE82 208 aaPredicted RBP17.18■□□□□ 0.34
USP39-218ENST00000493829 MBD3L5A6NJ08 208 aaPredicted RBP17.18■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms