RNA–Protein interactions for RNA: ENST00000460170.2

PTPRU-205, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 1 (best) BASIC

Gene PTPRU, Length 5,337 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-205ENST00000460170 ASF1BQ9NVP2 202 aa13.59□□□□□ -0.23
PTPRU-205ENST00000460170 ZNF175Q9Y473 711 aa13.59□□□□□ -0.23
PTPRU-205ENST00000460170 NSG1A0A0A6YYJ2 146 aa13.59□□□□□ -0.23
PTPRU-205ENST00000460170 FAM230AA0A1W2PPH8 454 aa13.59□□□□□ -0.23
PTPRU-205ENST00000460170 TSPAN11A1L157 253 aa13.59□□□□□ -0.23
PTPRU-205ENST00000460170 PLRG1O43660 514 aaKnown RBP13.59□□□□□ -0.23
PTPRU-205ENST00000460170 DPM1O60762 260 aa13.59□□□□□ -0.23
PTPRU-205ENST00000460170 TIAL1Q01085 375 aaKnown RBP eCLIP13.59□□□□□ -0.23
PTPRU-205ENST00000460170 TPBGQ13641 420 aa13.59□□□□□ -0.23
PTPRU-205ENST00000460170 GPR155Q7Z3F1 870 aa13.59□□□□□ -0.23
PTPRU-205ENST00000460170 MARCH3Q86UD3 253 aa13.59□□□□□ -0.23
PTPRU-205ENST00000460170 ZNF546Q86UE3 836 aa13.59□□□□□ -0.23
PTPRU-205ENST00000460170 ARL11Q969Q4 196 aa13.59□□□□□ -0.23
PTPRU-205ENST00000460170 SERTM1A2A2V5 107 aa13.59□□□□□ -0.23
PTPRU-205ENST00000460170 HRGP04196 525 aa13.59□□□□□ -0.23
PTPRU-205ENST00000460170 BDKRB2P30411 391 aa13.59□□□□□ -0.23
PTPRU-205ENST00000460170 IDO2Q6ZQW0 420 aa13.59□□□□□ -0.23
PTPRU-205ENST00000460170 LSM5Q9Y4Y9 91 aaKnown RBP13.59□□□□□ -0.23
PTPRU-205ENST00000460170 CACNA1CQ13936 2221 aa13.58□□□□□ -0.23
PTPRU-205ENST00000460170 A0A087WV62 115 aa13.58□□□□□ -0.23
PTPRU-205ENST00000460170 A0A0A6YYD5 115 aa13.58□□□□□ -0.23
PTPRU-205ENST00000460170 ST6GAL1P15907 406 aa13.58□□□□□ -0.23
PTPRU-205ENST00000460170 ELK1P19419 428 aa13.58□□□□□ -0.23
PTPRU-205ENST00000460170 CAMLGP49069 296 aa13.58□□□□□ -0.23
PTPRU-205ENST00000460170 CCR6P51684 374 aa13.58□□□□□ -0.23
PTPRU-205ENST00000460170 AFF3P51826 1226 aaKnown RBP13.58□□□□□ -0.23
PTPRU-205ENST00000460170 UBE2NP61088 152 aaKnown RBP13.58□□□□□ -0.23
PTPRU-205ENST00000460170 MELKQ14680 651 aa13.58□□□□□ -0.23
PTPRU-205ENST00000460170 SHHQ15465 462 aa13.58□□□□□ -0.23
PTPRU-205ENST00000460170 PM20D2Q8IYS1 436 aa13.58□□□□□ -0.23
PTPRU-205ENST00000460170 STEAP2Q8NFT2 490 aa13.58□□□□□ -0.23
PTPRU-205ENST00000460170 OR51D1Q8NGF3 324 aa13.58□□□□□ -0.23
PTPRU-205ENST00000460170 WDPCPO95876 746 aa13.58□□□□□ -0.24
PTPRU-205ENST00000460170 OR8U9P0C7N5 309 aa13.58□□□□□ -0.24
PTPRU-205ENST00000460170 VEGFCP49767 419 aa13.58□□□□□ -0.24
PTPRU-205ENST00000460170 CCR9P51686 369 aa13.58□□□□□ -0.24
PTPRU-205ENST00000460170 DCDP81605 110 aaKnown RBP13.58□□□□□ -0.24
PTPRU-205ENST00000460170 MLF2Q15773 248 aaPredicted RBP13.58□□□□□ -0.24
PTPRU-205ENST00000460170 FAM57BQ71RH2 274 aa13.58□□□□□ -0.24
PTPRU-205ENST00000460170 NXF5Q9H1B4 397 aaKnown RBP13.58□□□□□ -0.24
PTPRU-205ENST00000460170 EMC9Q9Y3B6 208 aa13.58□□□□□ -0.24
PTPRU-205ENST00000460170 B3GALT1Q9Y5Z6 326 aa13.58□□□□□ -0.24
PTPRU-205ENST00000460170 SULT1B1O43704 296 aa13.58□□□□□ -0.24
PTPRU-205ENST00000460170 MT-ATP6P00846 226 aa13.58□□□□□ -0.24
PTPRU-205ENST00000460170 GABRR1P24046 479 aa13.58□□□□□ -0.24
PTPRU-205ENST00000460170 CAMK2DQ13557 499 aa13.58□□□□□ -0.24
PTPRU-205ENST00000460170 IHHQ14623 411 aa13.58□□□□□ -0.24
PTPRU-205ENST00000460170 ELAVL1Q15717 326 aaKnown RBP13.58□□□□□ -0.24
PTPRU-205ENST00000460170 MRPL21Q7Z2W9 205 aaKnown RBP13.58□□□□□ -0.24
PTPRU-205ENST00000460170 RABEPKQ7Z6M1 372 aa13.58□□□□□ -0.24
PTPRU-205ENST00000460170 RHBDD1Q8TEB9 315 aa13.58□□□□□ -0.24
PTPRU-205ENST00000460170 CCNL2Q96S94 520 aaPredicted RBP13.58□□□□□ -0.24
PTPRU-205ENST00000460170 SLC38A1Q9H2H9 487 aa13.58□□□□□ -0.24
PTPRU-205ENST00000460170 FGF20Q9NP95 211 aaPredicted RBP13.58□□□□□ -0.24
PTPRU-205ENST00000460170 COQ3Q9NZJ6 369 aa13.58□□□□□ -0.24
PTPRU-205ENST00000460170 SURF4O15260 269 aa13.58□□□□□ -0.24
PTPRU-205ENST00000460170 EIF4E2O60573 245 aaKnown RBP13.58□□□□□ -0.24
PTPRU-205ENST00000460170 CRYZL1O95825 349 aa13.58□□□□□ -0.24
PTPRU-205ENST00000460170 HIST1H1CP16403 213 aaKnown RBP13.58□□□□□ -0.24
PTPRU-205ENST00000460170 BTG1P62324 171 aa13.58□□□□□ -0.24
PTPRU-205ENST00000460170 FABP5Q01469 135 aa13.58□□□□□ -0.24
PTPRU-205ENST00000460170 CNN3Q15417 329 aaKnown RBP13.58□□□□□ -0.24
PTPRU-205ENST00000460170 LIPNQ5VXI9 398 aa13.58□□□□□ -0.24
PTPRU-205ENST00000460170 ESPNLQ6ZVH7 1005 aa13.58□□□□□ -0.24
PTPRU-205ENST00000460170 OR6F1Q8NGZ6 308 aa13.58□□□□□ -0.24
PTPRU-205ENST00000460170 FNDC9Q8TBE3 224 aa13.58□□□□□ -0.24
PTPRU-205ENST00000460170 MRGPRX1Q96LB2 322 aa13.58□□□□□ -0.24
PTPRU-205ENST00000460170 STEAP1Q9UHE8 339 aa13.58□□□□□ -0.24
PTPRU-205ENST00000460170 SLC17A4Q9Y2C5 497 aa13.58□□□□□ -0.24
PTPRU-205ENST00000460170 KIF13BQ9NQT8 1826 aa13.57□□□□□ -0.24
PTPRU-205ENST00000460170 NUDT21O43809 227 aaKnown RBP13.57□□□□□ -0.24
PTPRU-205ENST00000460170 AKR1C2P52895 323 aa13.57□□□□□ -0.24
PTPRU-205ENST00000460170 RUNX2Q13950 521 aa13.57□□□□□ -0.24
PTPRU-205ENST00000460170 TMEM196Q5HYL7 178 aa13.57□□□□□ -0.24
PTPRU-205ENST00000460170 OVCH1Q7RTY7 1134 aa13.57□□□□□ -0.24
PTPRU-205ENST00000460170 TRAPPC6BQ86SZ2 158 aa13.57□□□□□ -0.24
PTPRU-205ENST00000460170 BBS1Q8NFJ9 593 aa13.57□□□□□ -0.24
PTPRU-205ENST00000460170 RRNAD1Q96FB5 475 aaKnown RBP13.57□□□□□ -0.24
PTPRU-205ENST00000460170 MRGPRX3Q96LB0 322 aa13.57□□□□□ -0.24
PTPRU-205ENST00000460170 ARHGAP9Q9BRR9 750 aa13.57□□□□□ -0.24
PTPRU-205ENST00000460170 ENY2Q9NPA8 101 aa13.57□□□□□ -0.24
PTPRU-205ENST00000460170 ACOXLQ9NUZ1 547 aa13.57□□□□□ -0.24
PTPRU-205ENST00000460170 DOCK5Q9H7D0 1870 aa13.57□□□□□ -0.24
PTPRU-205ENST00000460170 COL11A2P13942 1736 aaPredicted RBP13.57□□□□□ -0.24
PTPRU-205ENST00000460170 LOC102725191A0A1B0GVB3 256 aa13.57□□□□□ -0.24
PTPRU-205ENST00000460170 CDC20Q12834 499 aa13.57□□□□□ -0.24
PTPRU-205ENST00000460170 TNK1Q13470 666 aa13.57□□□□□ -0.24
PTPRU-205ENST00000460170 MLC1Q15049 377 aa13.57□□□□□ -0.24
PTPRU-205ENST00000460170 LPAL2Q16609 132 aa13.57□□□□□ -0.24
PTPRU-205ENST00000460170 C14orf28Q4W4Y0 310 aa13.57□□□□□ -0.24
PTPRU-205ENST00000460170 C1orf140Q5VVS0 124 aa13.57□□□□□ -0.24
PTPRU-205ENST00000460170 NANOS1Q8WY41 292 aaKnown RBP13.57□□□□□ -0.24
PTPRU-205ENST00000460170 CHST2Q9Y4C5 530 aa13.57□□□□□ -0.24
PTPRU-205ENST00000460170 LY75O60449 1722 aa13.57□□□□□ -0.24
PTPRU-205ENST00000460170 NSA2O95478 260 aaKnown RBP13.57□□□□□ -0.24
PTPRU-205ENST00000460170 CD63P08962 238 aa13.57□□□□□ -0.24
PTPRU-205ENST00000460170 CD53P19397 219 aa13.57□□□□□ -0.24
PTPRU-205ENST00000460170 BIDP55957 195 aa13.57□□□□□ -0.24
PTPRU-205ENST00000460170 BDH1Q02338 343 aa13.57□□□□□ -0.24
PTPRU-205ENST00000460170 RTL6Q6ICC9 239 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms