RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 VPS33AQ96AX1 596 aa6.17□□□□□ -1.42
VPS41-208ENST00000448833 FBXO17Q96EF6 278 aa6.17□□□□□ -1.42
VPS41-208ENST00000448833 LRR1Q96L50 414 aa6.17□□□□□ -1.42
VPS41-208ENST00000448833 C7orf26Q96N11 449 aa6.17□□□□□ -1.42
VPS41-208ENST00000448833 VRK1Q99986 396 aaPredicted RBP6.17□□□□□ -1.42
VPS41-208ENST00000448833 CCDC28BQ9BUN5 200 aa6.17□□□□□ -1.42
VPS41-208ENST00000448833 ASPNQ9BXN1 380 aa6.17□□□□□ -1.42
VPS41-208ENST00000448833 SHARPINQ9H0F6 387 aa6.17□□□□□ -1.42
VPS41-208ENST00000448833 ZNF442Q9H7R0 627 aa6.17□□□□□ -1.42
VPS41-208ENST00000448833 TMEM27Q9HBJ8 222 aa6.17□□□□□ -1.42
VPS41-208ENST00000448833 TCF7L2Q9NQB0 619 aa6.17□□□□□ -1.42
VPS41-208ENST00000448833 CA10Q9NS85 328 aa6.17□□□□□ -1.42
VPS41-208ENST00000448833 MRGBPQ9NV56 204 aa6.17□□□□□ -1.42
VPS41-208ENST00000448833 TESQ9UGI8 421 aaKnown RBP6.17□□□□□ -1.42
VPS41-208ENST00000448833 ADAM21Q9UKJ8 722 aa6.17□□□□□ -1.42
VPS41-208ENST00000448833 USP22Q9UPT9 525 aa6.17□□□□□ -1.42
VPS41-208ENST00000448833 NOX1Q9Y5S8 564 aa6.17□□□□□ -1.42
VPS41-208ENST00000448833 USH1CQ9Y6N9 552 aa6.17□□□□□ -1.42
VPS41-208ENST00000448833 SONP18583 2426 aaKnown RBP6.16□□□□□ -1.42
VPS41-208ENST00000448833 ZNF726A6NNF4 738 aa6.16□□□□□ -1.42
VPS41-208ENST00000448833 RNF212BA8MTL3 300 aa6.16□□□□□ -1.42
VPS41-208ENST00000448833 ZNF99A8MXY4 864 aaPredicted RBP6.16□□□□□ -1.42
VPS41-208ENST00000448833 ATP6V1G2-DDX39BF2Z307 99 aa6.16□□□□□ -1.42
VPS41-208ENST00000448833 LMX1BO60663 402 aa6.16□□□□□ -1.42
VPS41-208ENST00000448833 FZD7O75084 574 aa6.16□□□□□ -1.42
VPS41-208ENST00000448833 ZNF432O94892 652 aa6.16□□□□□ -1.42
VPS41-208ENST00000448833 LGI1O95970 557 aa6.16□□□□□ -1.42
VPS41-208ENST00000448833 IGKV3-15P01624 115 aa6.16□□□□□ -1.42
VPS41-208ENST00000448833 IGLV1-44P01699 117 aa6.16□□□□□ -1.42
VPS41-208ENST00000448833 OR4A8P0C604 315 aa6.16□□□□□ -1.42
VPS41-208ENST00000448833 PRG2P13727 222 aa6.16□□□□□ -1.42
VPS41-208ENST00000448833 GPX2P18283 190 aa6.16□□□□□ -1.42
VPS41-208ENST00000448833 NPR2P20594 1047 aa6.16□□□□□ -1.42
VPS41-208ENST00000448833 PTNP21246 168 aa6.16□□□□□ -1.42
VPS41-208ENST00000448833 PCMT1P22061 227 aa6.16□□□□□ -1.42
VPS41-208ENST00000448833 NR4A2P43354 598 aa6.16□□□□□ -1.42
VPS41-208ENST00000448833 EVX1P49640 407 aa6.16□□□□□ -1.42
VPS41-208ENST00000448833 SELENOPP49908 381 aa6.16□□□□□ -1.42
VPS41-208ENST00000448833 PPOXP50336 477 aa6.16□□□□□ -1.42
VPS41-208ENST00000448833 IDH3GP51553 393 aaPredicted RBP6.16□□□□□ -1.42
VPS41-208ENST00000448833 P2RY4P51582 365 aa6.16□□□□□ -1.42
VPS41-208ENST00000448833 FOXG1P55316 489 aaPredicted RBP6.16□□□□□ -1.42
VPS41-208ENST00000448833 CLDN17P56750 224 aa6.16□□□□□ -1.42
VPS41-208ENST00000448833 CDK6Q00534 326 aa6.16□□□□□ -1.42
VPS41-208ENST00000448833 IL1RL1Q01638 556 aa6.16□□□□□ -1.42
VPS41-208ENST00000448833 NAAAQ02083 359 aa6.16□□□□□ -1.42
VPS41-208ENST00000448833 POU3F1Q03052 451 aaPredicted RBP6.16□□□□□ -1.42
VPS41-208ENST00000448833 SPOCK1Q08629 439 aa6.16□□□□□ -1.42
VPS41-208ENST00000448833 SQLEQ14534 574 aa6.16□□□□□ -1.42
VPS41-208ENST00000448833 IQCCQ4KMZ1 466 aa6.16□□□□□ -1.42
VPS41-208ENST00000448833 SLC9B1Q4ZJI4 515 aa6.16□□□□□ -1.42
VPS41-208ENST00000448833 LRIF1Q5T3J3 769 aa6.16□□□□□ -1.42
VPS41-208ENST00000448833 GCNT6Q5T4J0 391 aa6.16□□□□□ -1.42
VPS41-208ENST00000448833 DHRS4L2Q6PKH6 230 aa6.16□□□□□ -1.42
VPS41-208ENST00000448833 B3GLCTQ6Y288 498 aa6.16□□□□□ -1.42
VPS41-208ENST00000448833 SLC30A8Q8IWU4 369 aa6.16□□□□□ -1.42
VPS41-208ENST00000448833 UEVLDQ8IX04 471 aa6.16□□□□□ -1.42
VPS41-208ENST00000448833 NANOS1Q8WY41 292 aaKnown RBP6.16□□□□□ -1.42
VPS41-208ENST00000448833 TLCD1Q96CP7 247 aa6.16□□□□□ -1.42
VPS41-208ENST00000448833 SPDL1Q96EA4 605 aa6.16□□□□□ -1.42
VPS41-208ENST00000448833 OR52B2Q96RD2 323 aa6.16□□□□□ -1.42
VPS41-208ENST00000448833 PAIP1Q9H074 479 aaKnown RBP6.16□□□□□ -1.42
VPS41-208ENST00000448833 MS4A5Q9H3V2 200 aa6.16□□□□□ -1.42
VPS41-208ENST00000448833 PLK3Q9H4B4 646 aa6.16□□□□□ -1.42
VPS41-208ENST00000448833 TMEM38AQ9H6F2 299 aa6.16□□□□□ -1.42
VPS41-208ENST00000448833 TMBIM4Q9HC24 238 aa6.16□□□□□ -1.42
VPS41-208ENST00000448833 CRLF2Q9HC73 371 aa6.16□□□□□ -1.42
VPS41-208ENST00000448833 SLC6A13Q9NSD5 602 aa6.16□□□□□ -1.42
VPS41-208ENST00000448833 CCDC167Q9P0B6 97 aa6.16□□□□□ -1.42
VPS41-208ENST00000448833 GPR160Q9UJ42 338 aa6.16□□□□□ -1.42
VPS41-208ENST00000448833 KCNS2Q9ULS6 477 aa6.16□□□□□ -1.42
VPS41-208ENST00000448833 TRIM33Q9UPN9 1127 aa6.16□□□□□ -1.42
VPS41-208ENST00000448833 ATRQ13535 2644 aa6.16□□□□□ -1.42
VPS41-208ENST00000448833 A0A087WUJ7 227 aa6.15□□□□□ -1.42
VPS41-208ENST00000448833 A0A1B0GWA3 101 aa6.15□□□□□ -1.42
VPS41-208ENST00000448833 LCE2BO14633 110 aa6.15□□□□□ -1.42
VPS41-208ENST00000448833 GPRIN2O60269 458 aa6.15□□□□□ -1.42
VPS41-208ENST00000448833 MGRN1O60291 552 aa6.15□□□□□ -1.42
VPS41-208ENST00000448833 FMO6PO60774 539 aa6.15□□□□□ -1.42
VPS41-208ENST00000448833 UPK3AO75631 287 aa6.15□□□□□ -1.42
VPS41-208ENST00000448833 OR6A2O95222 327 aa6.15□□□□□ -1.42
VPS41-208ENST00000448833 MT-ATP6P00846 226 aa6.15□□□□□ -1.42
VPS41-208ENST00000448833 C1QCP02747 245 aa6.15□□□□□ -1.42
VPS41-208ENST00000448833 CECR9P0C854 216 aa6.15□□□□□ -1.42
VPS41-208ENST00000448833 ARAFP10398 606 aa6.15□□□□□ -1.42
VPS41-208ENST00000448833 APEHP13798 732 aaKnown RBP6.15□□□□□ -1.42
VPS41-208ENST00000448833 LSP1P33241 339 aa6.15□□□□□ -1.42
VPS41-208ENST00000448833 ATP4BP51164 291 aa6.15□□□□□ -1.42
VPS41-208ENST00000448833 CHN2P52757 468 aa6.15□□□□□ -1.42
VPS41-208ENST00000448833 RGS8P57771 180 aaPredicted RBP6.15□□□□□ -1.42
VPS41-208ENST00000448833 RPS23P62266 143 aaKnown RBP6.15□□□□□ -1.42
VPS41-208ENST00000448833 ARF1P84077 181 aaKnown RBP6.15□□□□□ -1.42
VPS41-208ENST00000448833 SLC25A3Q00325 362 aa6.15□□□□□ -1.42
VPS41-208ENST00000448833 EGR4Q05215 589 aa6.15□□□□□ -1.42
VPS41-208ENST00000448833 RBBP4Q09028 425 aa6.15□□□□□ -1.42
VPS41-208ENST00000448833 SCGB2A2Q13296 93 aa6.15□□□□□ -1.42
VPS41-208ENST00000448833 PMS2P3Q13401 168 aa6.15□□□□□ -1.42
VPS41-208ENST00000448833 SCARB2Q14108 478 aa6.15□□□□□ -1.42
VPS41-208ENST00000448833 ADIPOQQ15848 244 aa6.15□□□□□ -1.42
VPS41-208ENST00000448833 MST1LQ2TV78 715 aa6.15□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 86.9 ms