RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 C16orf87Q6PH81 154 aa3.77□□□□□ -1.81
USH2A-202ENST00000366942 TSEN54Q7Z6J9 526 aaKnown RBP3.77□□□□□ -1.81
USH2A-202ENST00000366942 ZNF573Q86YE8 665 aa3.77□□□□□ -1.81
USH2A-202ENST00000366942 IGDCC3Q8IVU1 814 aa3.77□□□□□ -1.81
USH2A-202ENST00000366942 GID4Q8IVV7 300 aa3.77□□□□□ -1.81
USH2A-202ENST00000366942 ENKURQ8TC29 256 aa3.77□□□□□ -1.81
USH2A-202ENST00000366942 ZNF675Q8TD23 568 aa3.77□□□□□ -1.81
USH2A-202ENST00000366942 CHAC2Q8WUX2 184 aa3.77□□□□□ -1.81
USH2A-202ENST00000366942 RORBQ92753 470 aa3.77□□□□□ -1.81
USH2A-202ENST00000366942 NEIL2Q969S2 332 aa3.77□□□□□ -1.81
USH2A-202ENST00000366942 ABHD17AQ96GS6 310 aa3.77□□□□□ -1.81
USH2A-202ENST00000366942 SRRQ9GZT4 340 aa3.77□□□□□ -1.81
USH2A-202ENST00000366942 REEP4Q9H6H4 257 aa3.77□□□□□ -1.81
USH2A-202ENST00000366942 METTL17Q9H7H0 456 aaPredicted RBP3.77□□□□□ -1.81
USH2A-202ENST00000366942 UNKLQ9H9P5 680 aaKnown RBP3.77□□□□□ -1.81
USH2A-202ENST00000366942 ZNF229Q9UJW7 825 aa3.77□□□□□ -1.81
USH2A-202ENST00000366942 IGHV1OR21-1A0A087WYE8 117 aa3.76□□□□□ -1.81
USH2A-202ENST00000366942 CLCA1A8K7I4 914 aa3.76□□□□□ -1.81
USH2A-202ENST00000366942 H7C417 338 aa3.76□□□□□ -1.81
USH2A-202ENST00000366942 SH2D1BO14796 132 aa3.76□□□□□ -1.81
USH2A-202ENST00000366942 CXCL13O43927 109 aa3.76□□□□□ -1.81
USH2A-202ENST00000366942 HTR3BO95264 441 aa3.76□□□□□ -1.81
USH2A-202ENST00000366942 EML2O95834 649 aa3.76□□□□□ -1.81
USH2A-202ENST00000366942 H1F0P07305 194 aaKnown RBP3.76□□□□□ -1.81
USH2A-202ENST00000366942 HOXC4P09017 264 aaPredicted RBP3.76□□□□□ -1.81
USH2A-202ENST00000366942 SPINK2P20155 84 aa3.76□□□□□ -1.81
USH2A-202ENST00000366942 PDHA2P29803 388 aa3.76□□□□□ -1.81
USH2A-202ENST00000366942 TAS2R38P59533 333 aa3.76□□□□□ -1.81
USH2A-202ENST00000366942 FGL1Q08830 312 aa3.76□□□□□ -1.81
USH2A-202ENST00000366942 NTRK3Q16288 839 aa3.76□□□□□ -1.81
USH2A-202ENST00000366942 WSCD2Q2TBF2 565 aa3.76□□□□□ -1.81
USH2A-202ENST00000366942 ARHGAP11BQ3KRB8 267 aa3.76□□□□□ -1.81
USH2A-202ENST00000366942 C1QL3Q5VWW1 255 aa3.76□□□□□ -1.81
USH2A-202ENST00000366942 RANBP10Q6VN20 620 aa3.76□□□□□ -1.81
USH2A-202ENST00000366942 DPY19L4Q7Z388 723 aa3.76□□□□□ -1.81
USH2A-202ENST00000366942 PNPLA5Q7Z6Z6 429 aaPredicted RBP3.76□□□□□ -1.81
USH2A-202ENST00000366942 SLC35F3Q8IY50 421 aa3.76□□□□□ -1.81
USH2A-202ENST00000366942 GALNT4Q8N4A0 578 aa3.76□□□□□ -1.81
USH2A-202ENST00000366942 SPATA22Q8NHS9 363 aa3.76□□□□□ -1.81
USH2A-202ENST00000366942 RDH5Q92781 318 aa3.76□□□□□ -1.81
USH2A-202ENST00000366942 AP1S3Q96PC3 154 aa3.76□□□□□ -1.81
USH2A-202ENST00000366942 TIMP4Q99727 224 aa3.76□□□□□ -1.81
USH2A-202ENST00000366942 SLC35A5Q9BS91 424 aa3.76□□□□□ -1.81
USH2A-202ENST00000366942 POLR2J3Q9H1A7 115 aaKnown RBP3.76□□□□□ -1.81
USH2A-202ENST00000366942 SLC6A17Q9H1V8 727 aa3.76□□□□□ -1.81
USH2A-202ENST00000366942 OR51B5Q9H339 312 aa3.76□□□□□ -1.81
USH2A-202ENST00000366942 KCMF1Q9P0J7 381 aa3.76□□□□□ -1.81
USH2A-202ENST00000366942 ADAM29Q9UKF5 820 aa3.76□□□□□ -1.81
USH2A-202ENST00000366942 PILRBQ9UKJ0 227 aa3.76□□□□□ -1.81
USH2A-202ENST00000366942 PRDM4Q9UKN5 801 aa3.76□□□□□ -1.81
USH2A-202ENST00000366942 ZNF850A8MQ14 1090 aa3.76□□□□□ -1.81
USH2A-202ENST00000366942 DXOO77932 396 aaKnown RBP3.76□□□□□ -1.81
USH2A-202ENST00000366942 ANXA7P20073 488 aaKnown RBP3.76□□□□□ -1.81
USH2A-202ENST00000366942 SRD5A2P31213 254 aa3.76□□□□□ -1.81
USH2A-202ENST00000366942 ADAM17P78536 824 aa3.76□□□□□ -1.81
USH2A-202ENST00000366942 TRAF3Q13114 568 aa3.76□□□□□ -1.81
USH2A-202ENST00000366942 AGBL2Q5U5Z8 902 aa3.76□□□□□ -1.81
USH2A-202ENST00000366942 SMARCD3Q6STE5 483 aa3.76□□□□□ -1.81
USH2A-202ENST00000366942 ARMC10Q8N2F6 343 aa3.76□□□□□ -1.81
USH2A-202ENST00000366942 DCBLD1Q8N8Z6 715 aa3.76□□□□□ -1.81
USH2A-202ENST00000366942 BTBD2Q9BX70 525 aa3.76□□□□□ -1.81
USH2A-202ENST00000366942 CXXC4Q9H2H0 198 aa3.76□□□□□ -1.81
USH2A-202ENST00000366942 C8orf4Q9NR00 106 aa3.76□□□□□ -1.81
USH2A-202ENST00000366942 AP5S1Q9NUS5 200 aa3.76□□□□□ -1.81
USH2A-202ENST00000366942 RAP2CQ9Y3L5 183 aa3.76□□□□□ -1.81
USH2A-202ENST00000366942 B3GALT1Q9Y5Z6 326 aa3.76□□□□□ -1.81
USH2A-202ENST00000366942 LRP6O75581 1613 aa3.76□□□□□ -1.81
USH2A-202ENST00000366942 TNFRSF11BO00300 401 aa3.76□□□□□ -1.81
USH2A-202ENST00000366942 GPR137BO60478 399 aa3.76□□□□□ -1.81
USH2A-202ENST00000366942 ITGAMP11215 1152 aa3.76□□□□□ -1.81
USH2A-202ENST00000366942 ACRV1P26436 265 aa3.76□□□□□ -1.81
USH2A-202ENST00000366942 RHOBP62745 196 aa3.76□□□□□ -1.81
USH2A-202ENST00000366942 ZNF616Q08AN1 781 aa3.76□□□□□ -1.81
USH2A-202ENST00000366942 OLIG2Q13516 323 aa3.76□□□□□ -1.81
USH2A-202ENST00000366942 EBLN2Q6P2I7 272 aa3.76□□□□□ -1.81
USH2A-202ENST00000366942 TRIM46Q7Z4K8 759 aa3.76□□□□□ -1.81
USH2A-202ENST00000366942 TRABD2AQ86V40 505 aa3.76□□□□□ -1.81
USH2A-202ENST00000366942 OSTM1Q86WC4 334 aa3.76□□□□□ -1.81
USH2A-202ENST00000366942 Q8IYB0 196 aa3.76□□□□□ -1.81
USH2A-202ENST00000366942 NOA1Q8NC60 698 aaKnown RBP3.76□□□□□ -1.81
USH2A-202ENST00000366942 KBTBD8Q8NFY9 601 aa3.76□□□□□ -1.81
USH2A-202ENST00000366942 OR4D10Q8NGI6 311 aa3.76□□□□□ -1.81
USH2A-202ENST00000366942 OR13A1Q8NGR1 328 aa3.76□□□□□ -1.81
USH2A-202ENST00000366942 OR52N5Q8NH56 324 aa3.76□□□□□ -1.81
USH2A-202ENST00000366942 ITFG2Q969R8 447 aa3.76□□□□□ -1.81
USH2A-202ENST00000366942 ZNF285Q96NJ3 590 aa3.76□□□□□ -1.81
USH2A-202ENST00000366942 DCLRE1BQ9H816 532 aa3.76□□□□□ -1.81
USH2A-202ENST00000366942 MMP26Q9NRE1 261 aa3.76□□□□□ -1.81
USH2A-202ENST00000366942 MRPS28Q9Y2Q9 187 aaKnown RBP3.76□□□□□ -1.81
USH2A-202ENST00000366942 OR51B4Q9Y5P0 310 aa3.76□□□□□ -1.81
USH2A-202ENST00000366942 PRSS51A0A1B0GVH4 220 aa3.76□□□□□ -1.81
USH2A-202ENST00000366942 TCRBV5S4A2TA0A5A2 114 aa3.76□□□□□ -1.81
USH2A-202ENST00000366942 LNP1A1A4G5 178 aa3.76□□□□□ -1.81
USH2A-202ENST00000366942 NPIPB15A6NHN6 443 aaPredicted RBP3.76□□□□□ -1.81
USH2A-202ENST00000366942 TMEM229AB2RXF0 380 aa3.76□□□□□ -1.81
USH2A-202ENST00000366942 DISC1C4P0D8 188 aa3.76□□□□□ -1.81
USH2A-202ENST00000366942 SLC22A2O15244 555 aa3.76□□□□□ -1.81
USH2A-202ENST00000366942 ANGPTL7O43827 346 aa3.76□□□□□ -1.81
USH2A-202ENST00000366942 MFSD11O43934 449 aa3.76□□□□□ -1.81
USH2A-202ENST00000366942 GPX5O75715 221 aa3.76□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 64.5 ms