RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 RPS15P62841 145 aaKnown RBP11.82□□□□□ -0.52
SFSWAP-209ENST00000540469 REEP5Q00765 189 aa11.82□□□□□ -0.52
SFSWAP-209ENST00000540469 LILRB2Q8N423 598 aa11.82□□□□□ -0.52
SFSWAP-209ENST00000540469 OR4D10Q8NGI6 311 aa11.82□□□□□ -0.52
SFSWAP-209ENST00000540469 CD99L2Q8TCZ2 262 aa11.82□□□□□ -0.52
SFSWAP-209ENST00000540469 VOPP1Q96AW1 172 aa11.82□□□□□ -0.52
SFSWAP-209ENST00000540469 TNFRSF13CQ96RJ3 184 aa11.82□□□□□ -0.52
SFSWAP-209ENST00000540469 MNTQ99583 582 aa11.82□□□□□ -0.52
SFSWAP-209ENST00000540469 PBX4Q9BYU1 374 aa11.82□□□□□ -0.52
SFSWAP-209ENST00000540469 TSPAN10Q9H1Z9 355 aaPredicted RBP11.82□□□□□ -0.52
SFSWAP-209ENST00000540469 DPEP2Q9H4A9 486 aa11.82□□□□□ -0.52
SFSWAP-209ENST00000540469 SLC22A11Q9NSA0 550 aa11.82□□□□□ -0.52
SFSWAP-209ENST00000540469 FBXL3Q9UKT7 428 aa11.82□□□□□ -0.52
SFSWAP-209ENST00000540469 LHX6Q9UPM6 363 aa11.82□□□□□ -0.52
SFSWAP-209ENST00000540469 NOP16Q9Y3C1 178 aaKnown RBP11.82□□□□□ -0.52
SFSWAP-209ENST00000540469 FAM171A2A8MVW0 826 aa11.82□□□□□ -0.52
SFSWAP-209ENST00000540469 IDSB3KWA1 339 aa11.82□□□□□ -0.52
SFSWAP-209ENST00000540469 SLC35G4P0C7Q5 338 aa11.82□□□□□ -0.52
SFSWAP-209ENST00000540469 IL9P15248 144 aa11.82□□□□□ -0.52
SFSWAP-209ENST00000540469 RPA2P15927 270 aa11.82□□□□□ -0.52
SFSWAP-209ENST00000540469 EPCAMP16422 314 aa11.82□□□□□ -0.52
SFSWAP-209ENST00000540469 KCNJ3P48549 501 aa11.82□□□□□ -0.52
SFSWAP-209ENST00000540469 PRAMEF8Q5VWM4 474 aa11.82□□□□□ -0.52
SFSWAP-209ENST00000540469 PRAMEF7Q5VXH5 474 aa11.82□□□□□ -0.52
SFSWAP-209ENST00000540469 PWWP2BQ6NUJ5 590 aa11.82□□□□□ -0.52
SFSWAP-209ENST00000540469 ZCCHC12Q6PEW1 402 aa11.82□□□□□ -0.52
SFSWAP-209ENST00000540469 OR1M1Q8NGA1 313 aa11.82□□□□□ -0.52
SFSWAP-209ENST00000540469 ZNF514Q96K75 400 aaPredicted RBP11.82□□□□□ -0.52
SFSWAP-209ENST00000540469 VRK1Q99986 396 aaPredicted RBP11.82□□□□□ -0.52
SFSWAP-209ENST00000540469 IER2Q9BTL4 223 aa11.82□□□□□ -0.52
SFSWAP-209ENST00000540469 ADAM29Q9UKF5 820 aa11.82□□□□□ -0.52
SFSWAP-209ENST00000540469 PCDHB10Q9UN67 800 aa11.82□□□□□ -0.52
SFSWAP-209ENST00000540469 A0A0A6YYD5 115 aa11.81□□□□□ -0.52
SFSWAP-209ENST00000540469 CSN2P05814 226 aa11.81□□□□□ -0.52
SFSWAP-209ENST00000540469 S100A6P06703 90 aa11.81□□□□□ -0.52
SFSWAP-209ENST00000540469 HIST1H1TP22492 207 aaPredicted RBP11.81□□□□□ -0.52
SFSWAP-209ENST00000540469 SLC6A6P31641 620 aa11.81□□□□□ -0.52
SFSWAP-209ENST00000540469 VEGFBP49765 207 aa11.81□□□□□ -0.52
SFSWAP-209ENST00000540469 SERTAD2Q14140 314 aa11.81□□□□□ -0.52
SFSWAP-209ENST00000540469 GUCA2BQ16661 112 aa11.81□□□□□ -0.52
SFSWAP-209ENST00000540469 WDR88Q6ZMY6 472 aa11.81□□□□□ -0.52
SFSWAP-209ENST00000540469 RNF180Q86T96 592 aa11.81□□□□□ -0.52
SFSWAP-209ENST00000540469 CCDC107Q8WV48 283 aa11.81□□□□□ -0.52
SFSWAP-209ENST00000540469 SLC25A28Q96A46 364 aa11.81□□□□□ -0.52
SFSWAP-209ENST00000540469 DTD2Q96FN9 168 aa11.81□□□□□ -0.52
SFSWAP-209ENST00000540469 SEC22AQ96IW7 307 aa11.81□□□□□ -0.52
SFSWAP-209ENST00000540469 PCBD2Q9H0N5 130 aa11.81□□□□□ -0.52
SFSWAP-209ENST00000540469 PIGMQ9H3S5 423 aa11.81□□□□□ -0.52
SFSWAP-209ENST00000540469 TMEM27Q9HBJ8 222 aa11.81□□□□□ -0.52
SFSWAP-209ENST00000540469 RASL12Q9NYN1 266 aa11.81□□□□□ -0.52
SFSWAP-209ENST00000540469 CTSFQ9UBX1 484 aa11.81□□□□□ -0.52
SFSWAP-209ENST00000540469 PLEKHA6Q9Y2H5 1048 aa11.81□□□□□ -0.52
SFSWAP-209ENST00000540469 SCN3AQ9NY46 2000 aa11.81□□□□□ -0.52
SFSWAP-209ENST00000540469 XIRP2A4UGR9 3374 aa11.81□□□□□ -0.52
SFSWAP-209ENST00000540469 TRAV18A0A075B6X5 111 aa11.81□□□□□ -0.52
SFSWAP-209ENST00000540469 A0A0D9SG52 128 aa11.81□□□□□ -0.52
SFSWAP-209ENST00000540469 LRIT2A6NDA9 550 aa11.81□□□□□ -0.52
SFSWAP-209ENST00000540469 OR2W5A6NFC9 320 aa11.81□□□□□ -0.52
SFSWAP-209ENST00000540469 RFPL4AA6NLU0 287 aa11.81□□□□□ -0.52
SFSWAP-209ENST00000540469 RFPL4AL1F8VTS6 287 aa11.81□□□□□ -0.52
SFSWAP-209ENST00000540469 LRG1P02750 347 aa11.81□□□□□ -0.52
SFSWAP-209ENST00000540469 LIPCP11150 499 aa11.81□□□□□ -0.52
SFSWAP-209ENST00000540469 HTR2AP28223 471 aa11.81□□□□□ -0.52
SFSWAP-209ENST00000540469 DLSTP36957 453 aa11.81□□□□□ -0.52
SFSWAP-209ENST00000540469 TRA2BP62995 288 aaKnown RBP11.81□□□□□ -0.52
SFSWAP-209ENST00000540469 LTBQ06643 244 aa11.81□□□□□ -0.52
SFSWAP-209ENST00000540469 MANEAQ5SRI9 462 aa11.81□□□□□ -0.52
SFSWAP-209ENST00000540469 MRPL2Q5T653 305 aaKnown RBP11.81□□□□□ -0.52
SFSWAP-209ENST00000540469 H3F3CQ6NXT2 135 aa11.81□□□□□ -0.52
SFSWAP-209ENST00000540469 GAREM2Q75VX8 874 aa11.81□□□□□ -0.52
SFSWAP-209ENST00000540469 PARS2Q7L3T8 475 aaKnown RBP11.81□□□□□ -0.52
SFSWAP-209ENST00000540469 OR2W3Q7Z3T1 314 aa11.81□□□□□ -0.52
SFSWAP-209ENST00000540469 ZNF547Q8IVP9 402 aa11.81□□□□□ -0.52
SFSWAP-209ENST00000540469 OR4N5Q8IXE1 308 aa11.81□□□□□ -0.52
SFSWAP-209ENST00000540469 STEAP2Q8NFT2 490 aa11.81□□□□□ -0.52
SFSWAP-209ENST00000540469 OR1S2Q8NGQ3 325 aa11.81□□□□□ -0.52
SFSWAP-209ENST00000540469 HAVCR1Q96D42 359 aa11.81□□□□□ -0.52
SFSWAP-209ENST00000540469 BCL2L14Q9BZR8 327 aa11.81□□□□□ -0.52
SFSWAP-209ENST00000540469 C6orf106Q9H6K1 298 aaPredicted RBP11.81□□□□□ -0.52
SFSWAP-209ENST00000540469 TRPV4Q9HBA0 871 aa11.81□□□□□ -0.52
SFSWAP-209ENST00000540469 TBC1D3EA0A087X179 549 aa11.81□□□□□ -0.52
SFSWAP-209ENST00000540469 CENPVL1A0A0U1RR11 272 aa11.81□□□□□ -0.52
SFSWAP-209ENST00000540469 CTSLP07711 333 aa11.81□□□□□ -0.52
SFSWAP-209ENST00000540469 OR2T7P0C7T2 308 aa11.81□□□□□ -0.52
SFSWAP-209ENST00000540469 MST1P26927 711 aa11.81□□□□□ -0.52
SFSWAP-209ENST00000540469 DPP4P27487 766 aa11.81□□□□□ -0.52
SFSWAP-209ENST00000540469 MPGP29372 298 aa11.81□□□□□ -0.52
SFSWAP-209ENST00000540469 ST8SIA6P61647 398 aa11.81□□□□□ -0.52
SFSWAP-209ENST00000540469 GUCA2AQ02747 115 aa11.81□□□□□ -0.52
SFSWAP-209ENST00000540469 AMZ1Q400G9 498 aa11.81□□□□□ -0.52
SFSWAP-209ENST00000540469 ARHGAP11AQ6P4F7 1023 aa11.81□□□□□ -0.52
SFSWAP-209ENST00000540469 FAM220AQ7Z4H9 259 aa11.81□□□□□ -0.52
SFSWAP-209ENST00000540469 LDLRAD3Q86YD5 345 aa11.81□□□□□ -0.52
SFSWAP-209ENST00000540469 OR2T27Q8NH04 317 aa11.81□□□□□ -0.52
SFSWAP-209ENST00000540469 OR2L2Q8NH16 312 aa11.81□□□□□ -0.52
SFSWAP-209ENST00000540469 PAQR8Q8TEZ7 354 aa11.81□□□□□ -0.52
SFSWAP-209ENST00000540469 CPNE2Q96FN4 548 aaPredicted RBP11.81□□□□□ -0.52
SFSWAP-209ENST00000540469 ZNF281Q9Y2X9 895 aa11.81□□□□□ -0.52
SFSWAP-209ENST00000540469 PLEKHM1Q9Y4G2 1056 aa11.81□□□□□ -0.52
SFSWAP-209ENST00000540469 LOC100509620A0A075B734 347 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms