RNA–Protein interactions for RNA: ENST00000579061.5

SS18-212, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-212ENST00000579061 IGKV5-2P06315 115 aa18.98■□□□□ 0.63
SS18-212ENST00000579061 VEGFAP15692 232 aaPredicted RBP18.98■□□□□ 0.63
SS18-212ENST00000579061 RTL5Q5HYW3 569 aaPredicted RBP18.98■□□□□ 0.63
SS18-212ENST00000579061 C16orf71Q8IYS4 520 aaPredicted RBP18.98■□□□□ 0.63
SS18-212ENST00000579061 MYH3P11055 1940 aa18.98■□□□□ 0.63
SS18-212ENST00000579061 LRRC37AA6NMS7 1700 aa18.97■□□□□ 0.63
SS18-212ENST00000579061 PDE8AO60658 829 aa18.97■□□□□ 0.63
SS18-212ENST00000579061 FKBP5Q13451 457 aaPredicted RBP18.97■□□□□ 0.63
SS18-212ENST00000579061 RBM46Q8TBY0 533 aaKnown RBP18.97■□□□□ 0.63
SS18-212ENST00000579061 NEURL1BA8MQ27 555 aa18.96■□□□□ 0.63
SS18-212ENST00000579061 FZD9O00144 591 aa18.96■□□□□ 0.63
SS18-212ENST00000579061 SUPT20HQ8NEM7 779 aa18.96■□□□□ 0.63
SS18-212ENST00000579061 DNAAF4Q8WXU2 420 aa18.96■□□□□ 0.63
SS18-212ENST00000579061 JDP2Q8WYK2 163 aa18.96■□□□□ 0.63
SS18-212ENST00000579061 RTFDC1Q9BY42 306 aaPredicted RBP18.96■□□□□ 0.63
SS18-212ENST00000579061 SCN4AP35499 1836 aa18.95■□□□□ 0.62
SS18-212ENST00000579061 POTECB2RU33 542 aa18.94■□□□□ 0.62
SS18-212ENST00000579061 SLFN5Q08AF3 891 aa18.94■□□□□ 0.62
SS18-212ENST00000579061 CWF19L2Q2TBE0 894 aaKnown RBP18.94■□□□□ 0.62
SS18-212ENST00000579061 CCDC152Q4G0S7 254 aa18.94■□□□□ 0.62
SS18-212ENST00000579061 DIEXFQ68CQ4 756 aaKnown RBP18.94■□□□□ 0.62
SS18-212ENST00000579061 MPNDQ8N594 471 aa18.94■□□□□ 0.62
SS18-212ENST00000579061 LINS1Q8NG48 757 aa18.94■□□□□ 0.62
SS18-212ENST00000579061 CELF1Q92879 486 aaKnown RBP18.94■□□□□ 0.62
SS18-212ENST00000579061 DDNO94850 711 aaPredicted RBP18.93■□□□□ 0.62
SS18-212ENST00000579061 RPS8P62241 208 aaKnown RBP18.93■□□□□ 0.62
SS18-212ENST00000579061 FSTL1Q12841 308 aa18.93■□□□□ 0.62
SS18-212ENST00000579061 DPP8Q6V1X1 898 aaPredicted RBP18.93■□□□□ 0.62
SS18-212ENST00000579061 SLC51AQ86UW1 340 aa18.93■□□□□ 0.62
SS18-212ENST00000579061 L3MBTL3Q96JM7 780 aaPredicted RBP18.93■□□□□ 0.62
SS18-212ENST00000579061 H7C1W4 665 aa18.92■□□□□ 0.62
SS18-212ENST00000579061 HSPA6P17066 643 aa18.92■□□□□ 0.62
SS18-212ENST00000579061 GCKRQ14397 625 aa18.92■□□□□ 0.62
SS18-212ENST00000579061 LARGE2Q8N3Y3 721 aa18.92■□□□□ 0.62
SS18-212ENST00000579061 COL4A5P29400 1685 aa18.92■□□□□ 0.62
SS18-212ENST00000579061 JARID2Q92833 1246 aaPredicted RBP18.91■□□□□ 0.62
SS18-212ENST00000579061 ZNF541Q9H0D2 1346 aa18.91■□□□□ 0.62
SS18-212ENST00000579061 IQCA1LA6NCM1 817 aa18.9■□□□□ 0.62
SS18-212ENST00000579061 PPIP5K2O43314 1243 aa18.9■□□□□ 0.62
SS18-212ENST00000579061 CTSWP56202 376 aa18.9■□□□□ 0.62
SS18-212ENST00000579061 EIF6P56537 245 aaKnown RBP18.9■□□□□ 0.62
SS18-212ENST00000579061 NIM1KQ8IY84 436 aa18.9■□□□□ 0.62
SS18-212ENST00000579061 TRMT2AQ8IZ69 625 aaKnown RBP18.9■□□□□ 0.62
SS18-212ENST00000579061 SMC1BQ8NDV3 1235 aa18.9■□□□□ 0.62
SS18-212ENST00000579061 PLA2G12BQ9BX93 195 aa18.9■□□□□ 0.62
SS18-212ENST00000579061 SEC31BQ9NQW1 1179 aa18.9■□□□□ 0.62
SS18-212ENST00000579061 COL4A1P02462 1669 aa18.89■□□□□ 0.61
SS18-212ENST00000579061 KIAA2012Q0VF49 1180 aa18.89■□□□□ 0.61
SS18-212ENST00000579061 UBE3BQ7Z3V4 1068 aa18.89■□□□□ 0.61
SS18-212ENST00000579061 GPC2Q8N158 579 aa18.89■□□□□ 0.61
SS18-212ENST00000579061 TTLL11Q8NHH1 800 aa18.89■□□□□ 0.61
SS18-212ENST00000579061 RTL9Q8NET4 1388 aa18.89■□□□□ 0.61
SS18-212ENST00000579061 DUOX1Q9NRD9 1551 aa18.89■□□□□ 0.61
SS18-212ENST00000579061 LTBP1Q14766 1721 aa18.88■□□□□ 0.61
SS18-212ENST00000579061 F6X3S4 739 aa18.88■□□□□ 0.61
SS18-212ENST00000579061 CASP7P55210 303 aa18.88■□□□□ 0.61
SS18-212ENST00000579061 AOC3Q16853 763 aa18.88■□□□□ 0.61
SS18-212ENST00000579061 BEND3Q5T5X7 828 aa18.88■□□□□ 0.61
SS18-212ENST00000579061 MIER1Q8N108 512 aa18.88■□□□□ 0.61
SS18-212ENST00000579061 CDC5LQ99459 802 aaKnown RBP18.88■□□□□ 0.61
SS18-212ENST00000579061 CT47B1P0C2W7 299 aaPredicted RBP18.87■□□□□ 0.61
SS18-212ENST00000579061 CDCA7LQ96GN5 454 aa18.87■□□□□ 0.61
SS18-212ENST00000579061 PODXL2Q9NZ53 605 aa18.87■□□□□ 0.61
SS18-212ENST00000579061 NSFL1CQ9UNZ2 370 aaKnown RBP18.87■□□□□ 0.61
SS18-212ENST00000579061 ALDH1L2Q3SY69 923 aa18.86■□□□□ 0.61
SS18-212ENST00000579061 ANKRD18AQ8IVF6 992 aa18.86■□□□□ 0.61
SS18-212ENST00000579061 MRPL50Q8N5N7 158 aaKnown RBP18.86■□□□□ 0.61
SS18-212ENST00000579061 ZNRF3Q9ULT6 936 aa18.86■□□□□ 0.61
SS18-212ENST00000579061 PTPRCP08575 1304 aa18.85■□□□□ 0.61
SS18-212ENST00000579061 ALDH1L1O75891 902 aa18.85■□□□□ 0.61
SS18-212ENST00000579061 APLP1P51693 650 aa18.85■□□□□ 0.61
SS18-212ENST00000579061 GPSM2P81274 684 aa18.85■□□□□ 0.61
SS18-212ENST00000579061 TAF1DQ9H5J8 278 aaPredicted RBP18.85■□□□□ 0.61
SS18-212ENST00000579061 HACL1Q9UJ83 578 aa18.85■□□□□ 0.61
SS18-212ENST00000579061 CSF1RP07333 972 aa18.84■□□□□ 0.61
SS18-212ENST00000579061 CCDC85AQ96PX6 553 aaPredicted RBP18.84■□□□□ 0.61
SS18-212ENST00000579061 EYA3Q99504 573 aa18.84■□□□□ 0.61
SS18-212ENST00000579061 GREM2Q9H772 168 aa18.84■□□□□ 0.61
SS18-212ENST00000579061 POLLQ9UGP5 575 aa18.84■□□□□ 0.61
SS18-212ENST00000579061 CEP350Q5VT06 3117 aa18.83■□□□□ 0.61
SS18-212ENST00000579061 WASHC4Q2M389 1173 aa18.83■□□□□ 0.6
SS18-212ENST00000579061 SSH1Q8WYL5 1049 aa18.83■□□□□ 0.6
SS18-212ENST00000579061 BSDC1Q9NW68 430 aaPredicted RBP18.83■□□□□ 0.6
SS18-212ENST00000579061 GJA3Q9Y6H8 435 aa18.83■□□□□ 0.6
SS18-212ENST00000579061 SPEF2Q9C093 1822 aa18.83■□□□□ 0.6
SS18-212ENST00000579061 C6orf229H3BNL8 230 aa18.82■□□□□ 0.6
SS18-212ENST00000579061 CXCL9Q07325 125 aa18.82■□□□□ 0.6
SS18-212ENST00000579061 PNMA8AQ86V59 439 aaPredicted RBP18.82■□□□□ 0.6
SS18-212ENST00000579061 LDHDQ86WU2 507 aa18.82■□□□□ 0.6
SS18-212ENST00000579061 TBC1D16Q8TBP0 767 aa18.82■□□□□ 0.6
SS18-212ENST00000579061 SRCIN1Q9C0H9 1055 aa18.82■□□□□ 0.6
SS18-212ENST00000579061 XDHP47989 1333 aa18.81■□□□□ 0.6
SS18-212ENST00000579061 GRM8O00222 908 aa18.81■□□□□ 0.6
SS18-212ENST00000579061 LMOD1P29536 600 aaPredicted RBP18.81■□□□□ 0.6
SS18-212ENST00000579061 EPHX2P34913 555 aa18.81■□□□□ 0.6
SS18-212ENST00000579061 CHADLQ6NUI6 762 aa18.81■□□□□ 0.6
SS18-212ENST00000579061 SLC4A10Q6U841 1118 aa18.81■□□□□ 0.6
SS18-212ENST00000579061 ANKIB1Q9P2G1 1089 aa18.81■□□□□ 0.6
SS18-212ENST00000579061 GGA1Q9UJY5 639 aa18.81■□□□□ 0.6
SS18-212ENST00000579061 ADAMTSL1Q8N6G6 1762 aa18.81■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 71.1 ms