RNA–Protein interactions for RNA: ENST00000538995.1

RTN3-209, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 814 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-209ENST00000538995 VAMP4O75379 141 aa14.82□□□□□ -0.04
RTN3-209ENST00000538995 SLC4A2P04920 1241 aa14.82□□□□□ -0.04
RTN3-209ENST00000538995 APLP1P51693 650 aa14.82□□□□□ -0.04
RTN3-209ENST00000538995 NEXNQ0ZGT2 675 aa14.82□□□□□ -0.04
RTN3-209ENST00000538995 PI4KAP1Q8N8J0 262 aa14.82□□□□□ -0.04
RTN3-209ENST00000538995 SUPT20HQ8NEM7 779 aa14.82□□□□□ -0.04
RTN3-209ENST00000538995 DDNO94850 711 aaPredicted RBP14.81□□□□□ -0.04
RTN3-209ENST00000538995 EXOSC9Q06265 439 aaKnown RBP14.81□□□□□ -0.04
RTN3-209ENST00000538995 FLIIQ13045 1269 aa14.81□□□□□ -0.04
RTN3-209ENST00000538995 CDHR2Q9BYE9 1310 aa14.81□□□□□ -0.04
RTN3-209ENST00000538995 ZNF541Q9H0D2 1346 aa14.81□□□□□ -0.04
RTN3-209ENST00000538995 CCER2I3L3R5 266 aa14.8□□□□□ -0.04
RTN3-209ENST00000538995 TCERG1O14776 1098 aaKnown RBP14.8□□□□□ -0.04
RTN3-209ENST00000538995 DPP8Q6V1X1 898 aaPredicted RBP14.8□□□□□ -0.04
RTN3-209ENST00000538995 GPC2Q8N158 579 aa14.8□□□□□ -0.04
RTN3-209ENST00000538995 LARGE2Q8N3Y3 721 aa14.8□□□□□ -0.04
RTN3-209ENST00000538995 ZNF428Q96B54 188 aa14.8□□□□□ -0.04
RTN3-209ENST00000538995 SPINK5Q9NQ38 1064 aaPredicted RBP14.8□□□□□ -0.04
RTN3-209ENST00000538995 LRRC37AA6NMS7 1700 aa14.8□□□□□ -0.04
RTN3-209ENST00000538995 PDE8AO60658 829 aa14.79□□□□□ -0.04
RTN3-209ENST00000538995 IGKV5-2P06315 115 aa14.79□□□□□ -0.04
RTN3-209ENST00000538995 COL4A5P29400 1685 aa14.79□□□□□ -0.04
RTN3-209ENST00000538995 EIF6P56537 245 aaKnown RBP14.79□□□□□ -0.04
RTN3-209ENST00000538995 CCDC152Q4G0S7 254 aa14.79□□□□□ -0.04
RTN3-209ENST00000538995 RTL5Q5HYW3 569 aaPredicted RBP14.79□□□□□ -0.04
RTN3-209ENST00000538995 G2E3Q7L622 706 aa14.79□□□□□ -0.04
RTN3-209ENST00000538995 SLC51AQ86UW1 340 aa14.79□□□□□ -0.04
RTN3-209ENST00000538995 NIM1KQ8IY84 436 aa14.79□□□□□ -0.04
RTN3-209ENST00000538995 MPNDQ8N594 471 aa14.79□□□□□ -0.04
RTN3-209ENST00000538995 NEURL1BA8MQ27 555 aa14.78□□□□□ -0.04
RTN3-209ENST00000538995 PPIP5K2O43314 1243 aa14.78□□□□□ -0.04
RTN3-209ENST00000538995 FKBP5Q13451 457 aaPredicted RBP14.78□□□□□ -0.04
RTN3-209ENST00000538995 CELF1Q92879 486 aaKnown RBP14.78□□□□□ -0.04
RTN3-209ENST00000538995 KIAA2012Q0VF49 1180 aa14.77□□□□□ -0.05
RTN3-209ENST00000538995 AOC3Q16853 763 aa14.77□□□□□ -0.05
RTN3-209ENST00000538995 DNAAF4Q8WXU2 420 aa14.77□□□□□ -0.05
RTN3-209ENST00000538995 HACL1Q9UJ83 578 aa14.77□□□□□ -0.05
RTN3-209ENST00000538995 SCN4AP35499 1836 aa14.77□□□□□ -0.05
RTN3-209ENST00000538995 E9PSI1 815 aa14.76□□□□□ -0.05
RTN3-209ENST00000538995 CTSWP56202 376 aa14.76□□□□□ -0.05
RTN3-209ENST00000538995 RPS8P62241 208 aaKnown RBP14.76□□□□□ -0.05
RTN3-209ENST00000538995 CWF19L2Q2TBE0 894 aaKnown RBP14.76□□□□□ -0.05
RTN3-209ENST00000538995 LINS1Q8NG48 757 aa14.76□□□□□ -0.05
RTN3-209ENST00000538995 TAF1DQ9H5J8 278 aaPredicted RBP14.76□□□□□ -0.05
RTN3-209ENST00000538995 CACNA1FO60840 1977 aa14.76□□□□□ -0.05
RTN3-209ENST00000538995 DUOX1Q9NRD9 1551 aa14.76□□□□□ -0.05
RTN3-209ENST00000538995 RTL9Q8NET4 1388 aa14.75□□□□□ -0.05
RTN3-209ENST00000538995 CHADLQ6NUI6 762 aa14.75□□□□□ -0.05
RTN3-209ENST00000538995 LDHDQ86WU2 507 aa14.75□□□□□ -0.05
RTN3-209ENST00000538995 ZNRF3Q9ULT6 936 aa14.75□□□□□ -0.05
RTN3-209ENST00000538995 H7C1W4 665 aa14.74□□□□□ -0.05
RTN3-209ENST00000538995 GCKRQ14397 625 aa14.74□□□□□ -0.05
RTN3-209ENST00000538995 PNMA8AQ86V59 439 aaPredicted RBP14.74□□□□□ -0.05
RTN3-209ENST00000538995 PLA2G12BQ9BX93 195 aa14.74□□□□□ -0.05
RTN3-209ENST00000538995 LMOD1P29536 600 aaPredicted RBP14.73□□□□□ -0.05
RTN3-209ENST00000538995 EPHX2P34913 555 aa14.73□□□□□ -0.05
RTN3-209ENST00000538995 UBE3BQ7Z3V4 1068 aa14.73□□□□□ -0.05
RTN3-209ENST00000538995 CDC5LQ99459 802 aaKnown RBP14.73□□□□□ -0.05
RTN3-209ENST00000538995 SEC31BQ9NQW1 1179 aa14.73□□□□□ -0.05
RTN3-209ENST00000538995 PODXL2Q9NZ53 605 aa14.73□□□□□ -0.05
RTN3-209ENST00000538995 NSFL1CQ9UNZ2 370 aaKnown RBP14.73□□□□□ -0.05
RTN3-209ENST00000538995 COL4A1P02462 1669 aa14.73□□□□□ -0.05
RTN3-209ENST00000538995 LTBP1Q14766 1721 aa14.72□□□□□ -0.05
RTN3-209ENST00000538995 GPSM2P81274 684 aa14.72□□□□□ -0.05
RTN3-209ENST00000538995 ANKRD18AQ8IVF6 992 aa14.72□□□□□ -0.05
RTN3-209ENST00000538995 TTLL11Q8NHH1 800 aa14.72□□□□□ -0.05
RTN3-209ENST00000538995 JARID2Q92833 1246 aaPredicted RBP14.72□□□□□ -0.05
RTN3-209ENST00000538995 EYA3Q99504 573 aa14.72□□□□□ -0.05
RTN3-209ENST00000538995 GJA3Q9Y6H8 435 aa14.72□□□□□ -0.05
RTN3-209ENST00000538995 POTEIP0CG38 1075 aa14.71□□□□□ -0.05
RTN3-209ENST00000538995 POTEJP0CG39 1038 aa14.71□□□□□ -0.05
RTN3-209ENST00000538995 SCNN1DP51172 638 aa14.71□□□□□ -0.05
RTN3-209ENST00000538995 CASP7P55210 303 aa14.71□□□□□ -0.05
RTN3-209ENST00000538995 CXCL9Q07325 125 aa14.71□□□□□ -0.05
RTN3-209ENST00000538995 SLFN5Q08AF3 891 aa14.71□□□□□ -0.05
RTN3-209ENST00000538995 WASHC4Q2M389 1173 aa14.71□□□□□ -0.05
RTN3-209ENST00000538995 BEND3Q5T5X7 828 aa14.71□□□□□ -0.05
RTN3-209ENST00000538995 POLLQ9UGP5 575 aa14.71□□□□□ -0.05
RTN3-209ENST00000538995 ADAMTSL1Q8N6G6 1762 aa14.7□□□□□ -0.06
RTN3-209ENST00000538995 TAF1P21675 1872 aa14.7□□□□□ -0.06
RTN3-209ENST00000538995 TNIP1Q15025 636 aa14.7□□□□□ -0.06
RTN3-209ENST00000538995 EAPPQ56P03 285 aaPredicted RBP14.7□□□□□ -0.06
RTN3-209ENST00000538995 CIAPIN1Q6FI81 312 aa14.7□□□□□ -0.06
RTN3-209ENST00000538995 DNAJC5GQ8N7S2 189 aa14.7□□□□□ -0.06
RTN3-209ENST00000538995 TBC1D16Q8TBP0 767 aa14.7□□□□□ -0.06
RTN3-209ENST00000538995 CCDC85AQ96PX6 553 aaPredicted RBP14.7□□□□□ -0.06
RTN3-209ENST00000538995 XDHP47989 1333 aa14.69□□□□□ -0.06
RTN3-209ENST00000538995 F6X3S4 739 aa14.69□□□□□ -0.06
RTN3-209ENST00000538995 C6orf229H3BNL8 230 aa14.69□□□□□ -0.06
RTN3-209ENST00000538995 GREM2Q9H772 168 aa14.69□□□□□ -0.06
RTN3-209ENST00000538995 BSDC1Q9NW68 430 aaPredicted RBP14.69□□□□□ -0.06
RTN3-209ENST00000538995 GPRC5DQ9NZD1 345 aa14.69□□□□□ -0.06
RTN3-209ENST00000538995 ANKIB1Q9P2G1 1089 aa14.69□□□□□ -0.06
RTN3-209ENST00000538995 GGA1Q9UJY5 639 aa14.69□□□□□ -0.06
RTN3-209ENST00000538995 YDJCA8MPS7 323 aa14.68□□□□□ -0.06
RTN3-209ENST00000538995 ALDH1L1O75891 902 aa14.68□□□□□ -0.06
RTN3-209ENST00000538995 UFL1O94874 794 aa14.68□□□□□ -0.06
RTN3-209ENST00000538995 CSF1RP07333 972 aa14.68□□□□□ -0.06
RTN3-209ENST00000538995 USP50Q70EL3 339 aaPredicted RBP14.68□□□□□ -0.06
RTN3-209ENST00000538995 KLRG1Q96E93 195 aa14.68□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms