RNA–Protein interactions for RNA: ENST00000519474.5

HDAC3-215, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 736 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-215ENST00000519474 MPNDQ8N594 471 aa12□□□□□ -0.49
HDAC3-215ENST00000519474 DNAJC5GQ8N7S2 189 aa12□□□□□ -0.49
HDAC3-215ENST00000519474 VPS33BQ9H267 617 aa12□□□□□ -0.49
HDAC3-215ENST00000519474 CWC25Q9NXE8 425 aaPredicted RBP12□□□□□ -0.49
HDAC3-215ENST00000519474 ZNF521Q96K83 1311 aa12□□□□□ -0.49
HDAC3-215ENST00000519474 H7C1W4 665 aa11.99□□□□□ -0.49
HDAC3-215ENST00000519474 RPS8P62241 208 aaKnown RBP11.99□□□□□ -0.49
HDAC3-215ENST00000519474 JDP2Q8WYK2 163 aa11.99□□□□□ -0.49
HDAC3-215ENST00000519474 L3MBTL3Q96JM7 780 aaPredicted RBP11.99□□□□□ -0.49
HDAC3-215ENST00000519474 TMX4Q9H1E5 349 aaPredicted RBP11.99□□□□□ -0.49
HDAC3-215ENST00000519474 RTN4Q9NQC3 1192 aaKnown RBP11.99□□□□□ -0.49
HDAC3-215ENST00000519474 SEC31BQ9NQW1 1179 aa11.99□□□□□ -0.49
HDAC3-215ENST00000519474 ZNF541Q9H0D2 1346 aa11.99□□□□□ -0.49
HDAC3-215ENST00000519474 ANKRD36CQ5JPF3 1778 aa11.98□□□□□ -0.49
HDAC3-215ENST00000519474 PDE8AO60658 829 aa11.98□□□□□ -0.49
HDAC3-215ENST00000519474 POTEIP0CG38 1075 aa11.98□□□□□ -0.49
HDAC3-215ENST00000519474 POTEJP0CG39 1038 aa11.98□□□□□ -0.49
HDAC3-215ENST00000519474 FLIIQ13045 1269 aa11.98□□□□□ -0.49
HDAC3-215ENST00000519474 CWF19L2Q2TBE0 894 aaKnown RBP11.98□□□□□ -0.49
HDAC3-215ENST00000519474 TMC4Q7Z404 712 aa11.98□□□□□ -0.49
HDAC3-215ENST00000519474 LARGE2Q8N3Y3 721 aa11.98□□□□□ -0.49
HDAC3-215ENST00000519474 SMC1BQ8NDV3 1235 aa11.98□□□□□ -0.49
HDAC3-215ENST00000519474 NEURL1BA8MQ27 555 aa11.97□□□□□ -0.49
HDAC3-215ENST00000519474 APLP1P51693 650 aa11.97□□□□□ -0.49
HDAC3-215ENST00000519474 AOC3Q16853 763 aa11.97□□□□□ -0.49
HDAC3-215ENST00000519474 DPP8Q6V1X1 898 aaPredicted RBP11.97□□□□□ -0.49
HDAC3-215ENST00000519474 TAF1DQ9H5J8 278 aaPredicted RBP11.97□□□□□ -0.49
HDAC3-215ENST00000519474 MYH16Q9H6N6 1097 aa11.97□□□□□ -0.49
HDAC3-215ENST00000519474 TAF1P21675 1872 aa11.97□□□□□ -0.49
HDAC3-215ENST00000519474 CCER2I3L3R5 266 aa11.96□□□□□ -0.49
HDAC3-215ENST00000519474 PPIP5K2O43314 1243 aa11.96□□□□□ -0.49
HDAC3-215ENST00000519474 HSP90B1P14625 803 aaKnown RBP11.96□□□□□ -0.49
HDAC3-215ENST00000519474 EIF6P56537 245 aaKnown RBP11.96□□□□□ -0.49
HDAC3-215ENST00000519474 HTRA3P83110 453 aa11.96□□□□□ -0.49
HDAC3-215ENST00000519474 NEXNQ0ZGT2 675 aa11.96□□□□□ -0.49
HDAC3-215ENST00000519474 GPC2Q8N158 579 aa11.96□□□□□ -0.49
HDAC3-215ENST00000519474 SUPT20HQ8NEM7 779 aa11.96□□□□□ -0.49
HDAC3-215ENST00000519474 TTLL11Q8NHH1 800 aa11.96□□□□□ -0.49
HDAC3-215ENST00000519474 DNAAF4Q8WXU2 420 aa11.96□□□□□ -0.49
HDAC3-215ENST00000519474 POLLQ9UGP5 575 aa11.96□□□□□ -0.49
HDAC3-215ENST00000519474 NSFL1CQ9UNZ2 370 aaKnown RBP11.96□□□□□ -0.49
HDAC3-215ENST00000519474 WDR90Q96KV7 1748 aa11.96□□□□□ -0.49
HDAC3-215ENST00000519474 COL4A5P29400 1685 aa11.96□□□□□ -0.5
HDAC3-215ENST00000519474 LAMB2P55268 1798 aa11.95□□□□□ -0.5
HDAC3-215ENST00000519474 CDHR2Q9BYE9 1310 aa11.95□□□□□ -0.5
HDAC3-215ENST00000519474 IQCA1LA6NCM1 817 aa11.95□□□□□ -0.5
HDAC3-215ENST00000519474 F6X3S4 739 aa11.95□□□□□ -0.5
HDAC3-215ENST00000519474 CASP7P55210 303 aa11.95□□□□□ -0.5
HDAC3-215ENST00000519474 GPSM2P81274 684 aa11.95□□□□□ -0.5
HDAC3-215ENST00000519474 CXCL9Q07325 125 aa11.95□□□□□ -0.5
HDAC3-215ENST00000519474 SLFN5Q08AF3 891 aa11.95□□□□□ -0.5
HDAC3-215ENST00000519474 KIAA2012Q0VF49 1180 aa11.95□□□□□ -0.5
HDAC3-215ENST00000519474 FKBP5Q13451 457 aaPredicted RBP11.95□□□□□ -0.5
HDAC3-215ENST00000519474 GCKRQ14397 625 aa11.95□□□□□ -0.5
HDAC3-215ENST00000519474 NIM1KQ8IY84 436 aa11.95□□□□□ -0.5
HDAC3-215ENST00000519474 CCDC85AQ96PX6 553 aaPredicted RBP11.95□□□□□ -0.5
HDAC3-215ENST00000519474 HACL1Q9UJ83 578 aa11.95□□□□□ -0.5
HDAC3-215ENST00000519474 ZNRF3Q9ULT6 936 aa11.95□□□□□ -0.5
HDAC3-215ENST00000519474 GJA3Q9Y6H8 435 aa11.95□□□□□ -0.5
HDAC3-215ENST00000519474 EPHX2P34913 555 aa11.94□□□□□ -0.5
HDAC3-215ENST00000519474 EPS15P42566 896 aa11.94□□□□□ -0.5
HDAC3-215ENST00000519474 CCDC152Q4G0S7 254 aa11.94□□□□□ -0.5
HDAC3-215ENST00000519474 BEND3Q5T5X7 828 aa11.94□□□□□ -0.5
HDAC3-215ENST00000519474 CHADLQ6NUI6 762 aa11.94□□□□□ -0.5
HDAC3-215ENST00000519474 LINS1Q8NG48 757 aa11.94□□□□□ -0.5
HDAC3-215ENST00000519474 CDCA7LQ96GN5 454 aa11.94□□□□□ -0.5
HDAC3-215ENST00000519474 DDX60Q8IY21 1712 aaKnown RBP11.94□□□□□ -0.5
HDAC3-215ENST00000519474 YDJCA8MPS7 323 aa11.93□□□□□ -0.5
HDAC3-215ENST00000519474 RIMBP2O15034 1052 aa11.93□□□□□ -0.5
HDAC3-215ENST00000519474 ITGBL1O95965 494 aaPredicted RBP11.93□□□□□ -0.5
HDAC3-215ENST00000519474 CSF1RP07333 972 aa11.93□□□□□ -0.5
HDAC3-215ENST00000519474 WASHC4Q2M389 1173 aa11.93□□□□□ -0.5
HDAC3-215ENST00000519474 UBE3BQ7Z3V4 1068 aa11.93□□□□□ -0.5
HDAC3-215ENST00000519474 TRMT2AQ8IZ69 625 aaKnown RBP11.93□□□□□ -0.5
HDAC3-215ENST00000519474 PLA2G12BQ9BX93 195 aa11.93□□□□□ -0.5
HDAC3-215ENST00000519474 PODXL2Q9NZ53 605 aa11.93□□□□□ -0.5
HDAC3-215ENST00000519474 TIAM2Q8IVF5 1701 aa11.93□□□□□ -0.5
HDAC3-215ENST00000519474 COL4A1P02462 1669 aa11.93□□□□□ -0.5
HDAC3-215ENST00000519474 WTIPA6NIX2 430 aaPredicted RBP11.92□□□□□ -0.5
HDAC3-215ENST00000519474 E9PSI1 815 aa11.92□□□□□ -0.5
HDAC3-215ENST00000519474 C6orf229H3BNL8 230 aa11.92□□□□□ -0.5
HDAC3-215ENST00000519474 SCNN1DP51172 638 aa11.92□□□□□ -0.5
HDAC3-215ENST00000519474 CTSWP56202 376 aa11.92□□□□□ -0.5
HDAC3-215ENST00000519474 ANKRD18AQ8IVF6 992 aa11.92□□□□□ -0.5
HDAC3-215ENST00000519474 TBC1D16Q8TBP0 767 aa11.92□□□□□ -0.5
HDAC3-215ENST00000519474 GREM2Q9H772 168 aa11.92□□□□□ -0.5
HDAC3-215ENST00000519474 KCNQ5Q9NR82 932 aa11.92□□□□□ -0.5
HDAC3-215ENST00000519474 RAD17O75943 681 aa11.91□□□□□ -0.5
HDAC3-215ENST00000519474 DOK7Q18PE1 504 aa11.91□□□□□ -0.5
HDAC3-215ENST00000519474 EAPPQ56P03 285 aaPredicted RBP11.91□□□□□ -0.5
HDAC3-215ENST00000519474 CIAPIN1Q6FI81 312 aa11.91□□□□□ -0.5
HDAC3-215ENST00000519474 PNMA8AQ86V59 439 aaPredicted RBP11.91□□□□□ -0.5
HDAC3-215ENST00000519474 LDHDQ86WU2 507 aa11.91□□□□□ -0.5
HDAC3-215ENST00000519474 MRPL50Q8N5N7 158 aaKnown RBP11.91□□□□□ -0.5
HDAC3-215ENST00000519474 GPR101Q96P66 508 aaPredicted RBP11.91□□□□□ -0.5
HDAC3-215ENST00000519474 CLEC11AQ9Y240 323 aa11.91□□□□□ -0.5
HDAC3-215ENST00000519474 FOXO4P98177 505 aa11.9□□□□□ -0.5
HDAC3-215ENST00000519474 CNTROBQ8N137 903 aa11.9□□□□□ -0.5
HDAC3-215ENST00000519474 ZC3H12CQ9C0D7 883 aaKnown RBP11.9□□□□□ -0.5
HDAC3-215ENST00000519474 BSDC1Q9NW68 430 aaPredicted RBP11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms