RNA–Protein interactions for RNA: ENST00000513643.5

RNF4-221, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-221ENST00000513643 HSP90B1P14625 803 aaKnown RBP12.41□□□□□ -0.42
RNF4-221ENST00000513643 NEXNQ0ZGT2 675 aa12.41□□□□□ -0.42
RNF4-221ENST00000513643 FKBP5Q13451 457 aaPredicted RBP12.41□□□□□ -0.42
RNF4-221ENST00000513643 DDX46Q7L014 1031 aaKnown RBP12.41□□□□□ -0.42
RNF4-221ENST00000513643 TMC4Q7Z404 712 aa12.41□□□□□ -0.42
RNF4-221ENST00000513643 SSH1Q8WYL5 1049 aa12.41□□□□□ -0.42
RNF4-221ENST00000513643 CELF1Q92879 486 aaKnown RBP12.41□□□□□ -0.42
RNF4-221ENST00000513643 VPS33BQ9H267 617 aa12.41□□□□□ -0.42
RNF4-221ENST00000513643 LAMB2P55268 1798 aa12.41□□□□□ -0.42
RNF4-221ENST00000513643 POTECB2RU33 542 aa12.4□□□□□ -0.42
RNF4-221ENST00000513643 FZD9O00144 591 aa12.4□□□□□ -0.42
RNF4-221ENST00000513643 ALDH1L2Q3SY69 923 aa12.4□□□□□ -0.42
RNF4-221ENST00000513643 RTL5Q5HYW3 569 aaPredicted RBP12.4□□□□□ -0.42
RNF4-221ENST00000513643 TTLL11Q8NHH1 800 aa12.4□□□□□ -0.42
RNF4-221ENST00000513643 JARID2Q92833 1246 aaPredicted RBP12.4□□□□□ -0.42
RNF4-221ENST00000513643 ZNF277Q9NRM2 450 aaPredicted RBP12.4□□□□□ -0.42
RNF4-221ENST00000513643 COL4A1P02462 1669 aa12.4□□□□□ -0.42
RNF4-221ENST00000513643 F6X3S4 739 aa12.39□□□□□ -0.43
RNF4-221ENST00000513643 CSF1RP07333 972 aa12.39□□□□□ -0.43
RNF4-221ENST00000513643 IARSP41252 1262 aaKnown RBP12.39□□□□□ -0.43
RNF4-221ENST00000513643 C1QTNF8P60827 252 aa12.39□□□□□ -0.43
RNF4-221ENST00000513643 RPS8P62241 208 aaKnown RBP12.39□□□□□ -0.43
RNF4-221ENST00000513643 NMRK2Q9NPI5 230 aa12.39□□□□□ -0.43
RNF4-221ENST00000513643 RTL9Q8NET4 1388 aa12.39□□□□□ -0.43
RNF4-221ENST00000513643 DICER1Q9UPY3 1922 aaKnown RBP12.39□□□□□ -0.43
RNF4-221ENST00000513643 ZNF526Q8TF50 670 aaPredicted RBP12.38□□□□□ -0.43
RNF4-221ENST00000513643 SEC31BQ9NQW1 1179 aa12.38□□□□□ -0.43
RNF4-221ENST00000513643 COL4A5P29400 1685 aa12.38□□□□□ -0.43
RNF4-221ENST00000513643 UTYO14607 1347 aa12.37□□□□□ -0.43
RNF4-221ENST00000513643 PTPRCP08575 1304 aa12.37□□□□□ -0.43
RNF4-221ENST00000513643 KDM2BQ8NHM5 1336 aa12.37□□□□□ -0.43
RNF4-221ENST00000513643 ALDH1L1O75891 902 aa12.37□□□□□ -0.43
RNF4-221ENST00000513643 CTSWP56202 376 aa12.37□□□□□ -0.43
RNF4-221ENST00000513643 CCDC152Q4G0S7 254 aa12.37□□□□□ -0.43
RNF4-221ENST00000513643 UBE3BQ7Z3V4 1068 aa12.37□□□□□ -0.43
RNF4-221ENST00000513643 L3MBTL3Q96JM7 780 aaPredicted RBP12.37□□□□□ -0.43
RNF4-221ENST00000513643 PODXL2Q9NZ53 605 aa12.37□□□□□ -0.43
RNF4-221ENST00000513643 CACNA1SQ13698 1873 aa12.36□□□□□ -0.43
RNF4-221ENST00000513643 CCDC88AQ3V6T2 1871 aa12.36□□□□□ -0.43
RNF4-221ENST00000513643 FOXO4P98177 505 aa12.36□□□□□ -0.43
RNF4-221ENST00000513643 MPNDQ8N594 471 aa12.36□□□□□ -0.43
RNF4-221ENST00000513643 LRRC37AA6NMS7 1700 aa12.36□□□□□ -0.43
RNF4-221ENST00000513643 DUOX1Q9NRD9 1551 aa12.35□□□□□ -0.43
RNF4-221ENST00000513643 TOMM70O94826 608 aa12.35□□□□□ -0.43
RNF4-221ENST00000513643 RARSP54136 660 aaKnown RBP12.35□□□□□ -0.43
RNF4-221ENST00000513643 KIAA2012Q0VF49 1180 aa12.35□□□□□ -0.43
RNF4-221ENST00000513643 DPY19L2Q6NUT2 758 aa12.35□□□□□ -0.43
RNF4-221ENST00000513643 KAZALD1Q96I82 304 aa12.35□□□□□ -0.43
RNF4-221ENST00000513643 GREM2Q9H772 168 aa12.35□□□□□ -0.43
RNF4-221ENST00000513643 RRAGCQ9HB90 399 aa12.35□□□□□ -0.43
RNF4-221ENST00000513643 TAF1P21675 1872 aa12.35□□□□□ -0.43
RNF4-221ENST00000513643 GRM8O00222 908 aa12.34□□□□□ -0.43
RNF4-221ENST00000513643 DDNO94850 711 aaPredicted RBP12.34□□□□□ -0.43
RNF4-221ENST00000513643 VEGFAP15692 232 aaPredicted RBP12.34□□□□□ -0.43
RNF4-221ENST00000513643 GPSM2P81274 684 aa12.34□□□□□ -0.43
RNF4-221ENST00000513643 DPP8Q6V1X1 898 aaPredicted RBP12.34□□□□□ -0.43
RNF4-221ENST00000513643 SUPT20HQ8NEM7 779 aa12.34□□□□□ -0.43
RNF4-221ENST00000513643 SRCIN1Q9C0H9 1055 aa12.34□□□□□ -0.43
RNF4-221ENST00000513643 BSDC1Q9NW68 430 aaPredicted RBP12.34□□□□□ -0.43
RNF4-221ENST00000513643 POLLQ9UGP5 575 aa12.34□□□□□ -0.43
RNF4-221ENST00000513643 ZNF541Q9H0D2 1346 aa12.34□□□□□ -0.43
RNF4-221ENST00000513643 LTBP1Q14766 1721 aa12.34□□□□□ -0.43
RNF4-221ENST00000513643 WDR90Q96KV7 1748 aa12.34□□□□□ -0.43
RNF4-221ENST00000513643 HNRNPUQ00839 825 aaKnown RBP eCLIP12.33□□□□□ -0.44
RNF4-221ENST00000513643 EPHA10Q5JZY3 1008 aa12.33□□□□□ -0.44
RNF4-221ENST00000513643 TBC1D16Q8TBP0 767 aa12.33□□□□□ -0.44
RNF4-221ENST00000513643 RBM46Q8TBY0 533 aaKnown RBP12.33□□□□□ -0.44
RNF4-221ENST00000513643 BCL2L13Q9BXK5 485 aa12.33□□□□□ -0.44
RNF4-221ENST00000513643 TIAM2Q8IVF5 1701 aa12.33□□□□□ -0.44
RNF4-221ENST00000513643 ZBED9Q6R2W3 1325 aa12.33□□□□□ -0.44
RNF4-221ENST00000513643 NBPF7P0C2Y1 421 aaPredicted RBP12.32□□□□□ -0.44
RNF4-221ENST00000513643 AOC3Q16853 763 aa12.32□□□□□ -0.44
RNF4-221ENST00000513643 ANKRD18AQ8IVF6 992 aa12.32□□□□□ -0.44
RNF4-221ENST00000513643 GPC2Q8N158 579 aa12.32□□□□□ -0.44
RNF4-221ENST00000513643 LARGE2Q8N3Y3 721 aa12.32□□□□□ -0.44
RNF4-221ENST00000513643 JDP2Q8WYK2 163 aa12.32□□□□□ -0.44
RNF4-221ENST00000513643 ARHGAP45Q92619 1136 aa12.32□□□□□ -0.44
RNF4-221ENST00000513643 CCDC85AQ96PX6 553 aaPredicted RBP12.32□□□□□ -0.44
RNF4-221ENST00000513643 USP44Q9H0E7 712 aa12.32□□□□□ -0.44
RNF4-221ENST00000513643 TMX4Q9H1E5 349 aaPredicted RBP12.32□□□□□ -0.44
RNF4-221ENST00000513643 SMC4Q9NTJ3 1288 aa12.32□□□□□ -0.44
RNF4-221ENST00000513643 MINPP1Q9UNW1 487 aa12.32□□□□□ -0.44
RNF4-221ENST00000513643 PPIP5K2O43314 1243 aa12.31□□□□□ -0.44
RNF4-221ENST00000513643 ITGA6P23229 1130 aa12.31□□□□□ -0.44
RNF4-221ENST00000513643 RABL6Q3YEC7 729 aaPredicted RBP12.31□□□□□ -0.44
RNF4-221ENST00000513643 CDC5LQ99459 802 aaKnown RBP12.31□□□□□ -0.44
RNF4-221ENST00000513643 ZNRF3Q9ULT6 936 aa12.31□□□□□ -0.44
RNF4-221ENST00000513643 NOB1Q9ULX3 412 aaKnown RBP12.31□□□□□ -0.44
RNF4-221ENST00000513643 NSFL1CQ9UNZ2 370 aaKnown RBP12.31□□□□□ -0.44
RNF4-221ENST00000513643 YDJCA8MPS7 323 aa12.3□□□□□ -0.44
RNF4-221ENST00000513643 CXCL9Q07325 125 aa12.3□□□□□ -0.44
RNF4-221ENST00000513643 FAM161AQ3B820 660 aa12.3□□□□□ -0.44
RNF4-221ENST00000513643 SLC4A10Q6U841 1118 aa12.3□□□□□ -0.44
RNF4-221ENST00000513643 SUCLG2Q96I99 432 aa12.3□□□□□ -0.44
RNF4-221ENST00000513643 WTIPA6NIX2 430 aaPredicted RBP12.29□□□□□ -0.44
RNF4-221ENST00000513643 SCNN1DP51172 638 aa12.29□□□□□ -0.44
RNF4-221ENST00000513643 FSTL1Q12841 308 aa12.29□□□□□ -0.44
RNF4-221ENST00000513643 WASHC4Q2M389 1173 aa12.29□□□□□ -0.44
RNF4-221ENST00000513643 LMBR1LQ6UX01 489 aa12.29□□□□□ -0.44
RNF4-221ENST00000513643 NIM1KQ8IY84 436 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms