RNA–Protein interactions for RNA: ENST00000504627.1

SQSTM1-209, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 602 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-209ENST00000504627 NIM1KQ8IY84 436 aa23.13■■□□□ 1.29
SQSTM1-209ENST00000504627 TSPYL6Q8N831 410 aa23.13■■□□□ 1.29
SQSTM1-209ENST00000504627 MYD88Q99836 296 aa23.13■■□□□ 1.29
SQSTM1-209ENST00000504627 MPNDQ8N594 471 aa23.12■■□□□ 1.29
SQSTM1-209ENST00000504627 KLRG1Q96E93 195 aa23.12■■□□□ 1.29
SQSTM1-209ENST00000504627 IRS4O14654 1257 aaPredicted RBP23.11■■□□□ 1.29
SQSTM1-209ENST00000504627 EPHX2P34913 555 aa23.11■■□□□ 1.29
SQSTM1-209ENST00000504627 AOC3Q16853 763 aa23.11■■□□□ 1.29
SQSTM1-209ENST00000504627 LDHDQ86WU2 507 aa23.11■■□□□ 1.29
SQSTM1-209ENST00000504627 STK31Q9BXU1 1019 aa23.11■■□□□ 1.29
SQSTM1-209ENST00000504627 VPS33BQ9H267 617 aa23.11■■□□□ 1.29
SQSTM1-209ENST00000504627 CLEC11AQ9Y240 323 aa23.11■■□□□ 1.29
SQSTM1-209ENST00000504627 SALL2Q9Y467 1007 aaPredicted RBP23.11■■□□□ 1.29
SQSTM1-209ENST00000504627 SCN4AP35499 1836 aa23.1■■□□□ 1.29
SQSTM1-209ENST00000504627 TMC4Q7Z404 712 aa23.1■■□□□ 1.29
SQSTM1-209ENST00000504627 LAMB2P55268 1798 aa23.09■■□□□ 1.29
SQSTM1-209ENST00000504627 HSP90B1P14625 803 aaKnown RBP23.09■■□□□ 1.29
SQSTM1-209ENST00000504627 LMOD1P29536 600 aaPredicted RBP23.09■■□□□ 1.29
SQSTM1-209ENST00000504627 SF3B3Q15393 1217 aaKnown RBP23.09■■□□□ 1.29
SQSTM1-209ENST00000504627 NCBP3Q53F19 620 aaKnown RBP23.09■■□□□ 1.29
SQSTM1-209ENST00000504627 PNMA8AQ86V59 439 aaPredicted RBP23.09■■□□□ 1.29
SQSTM1-209ENST00000504627 ZBTB38Q8NAP3 1195 aaPredicted RBP23.09■■□□□ 1.29
SQSTM1-209ENST00000504627 IL16Q14005 1332 aa23.08■■□□□ 1.29
SQSTM1-209ENST00000504627 TWISTNBQ3B726 338 aaPredicted RBP23.08■■□□□ 1.29
SQSTM1-209ENST00000504627 CCDC191Q8NCU4 936 aa23.08■■□□□ 1.29
SQSTM1-209ENST00000504627 RTFDC1Q9BY42 306 aaPredicted RBP23.08■■□□□ 1.29
SQSTM1-209ENST00000504627 COL4A5P29400 1685 aa23.07■■□□□ 1.28
SQSTM1-209ENST00000504627 METTL22Q9BUU2 404 aaPredicted RBP23.07■■□□□ 1.28
SQSTM1-209ENST00000504627 CWC25Q9NXE8 425 aaPredicted RBP23.07■■□□□ 1.28
SQSTM1-209ENST00000504627 CELF1Q92879 486 aaKnown RBP23.06■■□□□ 1.28
SQSTM1-209ENST00000504627 MAP3K2Q9Y2U5 619 aa23.06■■□□□ 1.28
SQSTM1-209ENST00000504627 KSR2Q6VAB6 950 aa23.05■■□□□ 1.28
SQSTM1-209ENST00000504627 ZNRF3Q9ULT6 936 aa23.05■■□□□ 1.28
SQSTM1-209ENST00000504627 DDX60Q8IY21 1712 aaKnown RBP23.05■■□□□ 1.28
SQSTM1-209ENST00000504627 PI4KAP2A4QPH2 592 aa23.04■■□□□ 1.28
SQSTM1-209ENST00000504627 PCCAP05165 728 aaPredicted RBP23.04■■□□□ 1.28
SQSTM1-209ENST00000504627 KIAA2012Q0VF49 1180 aa23.04■■□□□ 1.28
SQSTM1-209ENST00000504627 PI4KAP1Q8N8J0 262 aa23.04■■□□□ 1.28
SQSTM1-209ENST00000504627 NSFL1CQ9UNZ2 370 aaKnown RBP23.04■■□□□ 1.28
SQSTM1-209ENST00000504627 SLC4A2P04920 1241 aa23.03■■□□□ 1.28
SQSTM1-209ENST00000504627 NEXNQ0ZGT2 675 aa23.03■■□□□ 1.28
SQSTM1-209ENST00000504627 WDR63Q8IWG1 891 aa23.03■■□□□ 1.28
SQSTM1-209ENST00000504627 TAF1P21675 1872 aa23.02■■□□□ 1.28
SQSTM1-209ENST00000504627 SCNN1DP51172 638 aa23.02■■□□□ 1.28
SQSTM1-209ENST00000504627 RPS8P62241 208 aaKnown RBP23.02■■□□□ 1.28
SQSTM1-209ENST00000504627 JMYQ8N9B5 988 aa23.02■■□□□ 1.28
SQSTM1-209ENST00000504627 JARID2Q92833 1246 aaPredicted RBP23.02■■□□□ 1.28
SQSTM1-209ENST00000504627 CREBZFQ9NS37 354 aa23.02■■□□□ 1.28
SQSTM1-209ENST00000504627 FANCIQ9NVI1 1328 aa23.02■■□□□ 1.28
SQSTM1-209ENST00000504627 PDE8AO60658 829 aa23.01■■□□□ 1.27
SQSTM1-209ENST00000504627 EPS15P42566 896 aa23.01■■□□□ 1.27
SQSTM1-209ENST00000504627 CXCL9Q07325 125 aa23.01■■□□□ 1.27
SQSTM1-209ENST00000504627 CCDC152Q4G0S7 254 aa23.01■■□□□ 1.27
SQSTM1-209ENST00000504627 ZNF521Q96K83 1311 aa23.01■■□□□ 1.27
SQSTM1-209ENST00000504627 C6orf229H3BNL8 230 aa23■■□□□ 1.27
SQSTM1-209ENST00000504627 WASHC4Q2M389 1173 aa23■■□□□ 1.27
SQSTM1-209ENST00000504627 MAP1SQ66K74 1059 aaPredicted RBP23■■□□□ 1.27
SQSTM1-209ENST00000504627 CIAPIN1Q6FI81 312 aa23■■□□□ 1.27
SQSTM1-209ENST00000504627 TNIP1Q15025 636 aa22.99■■□□□ 1.27
SQSTM1-209ENST00000504627 G2E3Q7L622 706 aa22.99■■□□□ 1.27
SQSTM1-209ENST00000504627 CNTROBQ8N137 903 aa22.99■■□□□ 1.27
SQSTM1-209ENST00000504627 CCDC85AQ96PX6 553 aaPredicted RBP22.99■■□□□ 1.27
SQSTM1-209ENST00000504627 SEC31BQ9NQW1 1179 aa22.99■■□□□ 1.27
SQSTM1-209ENST00000504627 PASKQ96RG2 1323 aa22.99■■□□□ 1.27
SQSTM1-209ENST00000504627 RAD17O75943 681 aa22.98■■□□□ 1.27
SQSTM1-209ENST00000504627 ITGBL1O95965 494 aaPredicted RBP22.98■■□□□ 1.27
SQSTM1-209ENST00000504627 GPSM2P81274 684 aa22.98■■□□□ 1.27
SQSTM1-209ENST00000504627 USP50Q70EL3 339 aaPredicted RBP22.98■■□□□ 1.27
SQSTM1-209ENST00000504627 EYA3Q99504 573 aa22.98■■□□□ 1.27
SQSTM1-209ENST00000504627 BCL2L13Q9BXK5 485 aa22.98■■□□□ 1.27
SQSTM1-209ENST00000504627 RIMBP2O15034 1052 aa22.97■■□□□ 1.27
SQSTM1-209ENST00000504627 IGKV5-2P06315 115 aa22.97■■□□□ 1.27
SQSTM1-209ENST00000504627 GPRC5DQ9NZD1 345 aa22.97■■□□□ 1.27
SQSTM1-209ENST00000504627 MKRN1Q9UHC7 482 aaKnown RBP22.97■■□□□ 1.27
SQSTM1-209ENST00000504627 TMEM88BA6NKF7 163 aa22.96■■□□□ 1.27
SQSTM1-209ENST00000504627 GMPSP49915 693 aaPredicted RBP22.96■■□□□ 1.27
SQSTM1-209ENST00000504627 EXOSC9Q06265 439 aaKnown RBP22.96■■□□□ 1.27
SQSTM1-209ENST00000504627 FLIIQ13045 1269 aa22.96■■□□□ 1.27
SQSTM1-209ENST00000504627 FKBP5Q13451 457 aaPredicted RBP22.96■■□□□ 1.27
SQSTM1-209ENST00000504627 CWF19L2Q2TBE0 894 aaKnown RBP22.96■■□□□ 1.27
SQSTM1-209ENST00000504627 ADARB2Q9NS39 739 aaKnown RBP22.96■■□□□ 1.27
SQSTM1-209ENST00000504627 ANKIB1Q9P2G1 1089 aa22.96■■□□□ 1.27
SQSTM1-209ENST00000504627 POLLQ9UGP5 575 aa22.96■■□□□ 1.27
SQSTM1-209ENST00000504627 CDHR2Q9BYE9 1310 aa22.96■■□□□ 1.27
SQSTM1-209ENST00000504627 LRRC37AA6NMS7 1700 aa22.95■■□□□ 1.26
SQSTM1-209ENST00000504627 MYH16Q9H6N6 1097 aa22.95■■□□□ 1.26
SQSTM1-209ENST00000504627 NEURL1BA8MQ27 555 aa22.94■■□□□ 1.26
SQSTM1-209ENST00000504627 VAMP4O75379 141 aa22.94■■□□□ 1.26
SQSTM1-209ENST00000504627 ANKRD18AQ8IVF6 992 aa22.94■■□□□ 1.26
SQSTM1-209ENST00000504627 DBNDD1Q9H9R9 158 aa22.94■■□□□ 1.26
SQSTM1-209ENST00000504627 ADAMTSL1Q8N6G6 1762 aa22.94■■□□□ 1.26
SQSTM1-209ENST00000504627 LTBP1Q14766 1721 aa22.94■■□□□ 1.26
SQSTM1-209ENST00000504627 DUOX1Q9NRD9 1551 aa22.93■■□□□ 1.26
SQSTM1-209ENST00000504627 YDJCA8MPS7 323 aa22.93■■□□□ 1.26
SQSTM1-209ENST00000504627 CTSWP56202 376 aa22.93■■□□□ 1.26
SQSTM1-209ENST00000504627 TBC1D16Q8TBP0 767 aa22.93■■□□□ 1.26
SQSTM1-209ENST00000504627 ZC3H12CQ9C0D7 883 aaKnown RBP22.93■■□□□ 1.26
SQSTM1-209ENST00000504627 G3V3G9 751 aa22.92■■□□□ 1.26
SQSTM1-209ENST00000504627 DCAF8Q5TAQ9 597 aa22.92■■□□□ 1.26
SQSTM1-209ENST00000504627 DNAAF4Q8WXU2 420 aa22.92■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 129.9 ms