RNA–Protein interactions for RNA: ENST00000494123.5

BRCA1-223, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-223ENST00000494123 CCDC85AQ96PX6 553 aaPredicted RBP18.26■□□□□ 0.51
BRCA1-223ENST00000494123 CHMP3Q9Y3E7 222 aa18.26■□□□□ 0.51
BRCA1-223ENST00000494123 KIAA1551Q9HCM1 1747 aa18.26■□□□□ 0.51
BRCA1-223ENST00000494123 GNAI2P04899 355 aa18.25■□□□□ 0.51
BRCA1-223ENST00000494123 NPR1P16066 1061 aa18.25■□□□□ 0.51
BRCA1-223ENST00000494123 SF3B3Q15393 1217 aaKnown RBP18.25■□□□□ 0.51
BRCA1-223ENST00000494123 MASTLQ96GX5 879 aa18.25■□□□□ 0.51
BRCA1-223ENST00000494123 RBM17Q96I25 401 aaKnown RBP18.25■□□□□ 0.51
BRCA1-223ENST00000494123 LRRFIP2Q9Y608 721 aaKnown RBP18.25■□□□□ 0.51
BRCA1-223ENST00000494123 FOXO4P98177 505 aa18.24■□□□□ 0.51
BRCA1-223ENST00000494123 EPHA10Q5JZY3 1008 aa18.24■□□□□ 0.51
BRCA1-223ENST00000494123 DDX46Q7L014 1031 aaKnown RBP18.24■□□□□ 0.51
BRCA1-223ENST00000494123 TTLL11Q8NHH1 800 aa18.24■□□□□ 0.51
BRCA1-223ENST00000494123 BICC1Q9H694 974 aaKnown RBP18.24■□□□□ 0.51
BRCA1-223ENST00000494123 STYK1Q6J9G0 422 aa18.23■□□□□ 0.51
BRCA1-223ENST00000494123 LMBR1LQ6UX01 489 aa18.23■□□□□ 0.51
BRCA1-223ENST00000494123 KAZALD1Q96I82 304 aa18.23■□□□□ 0.51
BRCA1-223ENST00000494123 CRBNQ96SW2 442 aa18.23■□□□□ 0.51
BRCA1-223ENST00000494123 PIM2Q9P1W9 311 aa18.23■□□□□ 0.51
BRCA1-223ENST00000494123 CACNA1SQ13698 1873 aa18.23■□□□□ 0.51
BRCA1-223ENST00000494123 CSF1RP07333 972 aa18.22■□□□□ 0.51
BRCA1-223ENST00000494123 ALDH1B1P30837 517 aa18.22■□□□□ 0.51
BRCA1-223ENST00000494123 CNKSR1Q969H4 720 aa18.22■□□□□ 0.51
BRCA1-223ENST00000494123 GREM2Q9H772 168 aa18.22■□□□□ 0.51
BRCA1-223ENST00000494123 C1orf115Q9H7X2 142 aa18.22■□□□□ 0.51
BRCA1-223ENST00000494123 HOXA10P31260 410 aaPredicted RBP18.21■□□□□ 0.51
BRCA1-223ENST00000494123 FAM161AQ3B820 660 aa18.21■□□□□ 0.51
BRCA1-223ENST00000494123 ANKRD44Q8N8A2 993 aa18.21■□□□□ 0.51
BRCA1-223ENST00000494123 WWC3Q9ULE0 1092 aa18.21■□□□□ 0.51
BRCA1-223ENST00000494123 RTL9Q8NET4 1388 aa18.2■□□□□ 0.5
BRCA1-223ENST00000494123 KCNA3P22001 575 aa18.2■□□□□ 0.5
BRCA1-223ENST00000494123 IRX6P78412 446 aaPredicted RBP18.2■□□□□ 0.5
BRCA1-223ENST00000494123 CCDC57Q2TAC2 916 aa18.2■□□□□ 0.5
BRCA1-223ENST00000494123 RABL6Q3YEC7 729 aaPredicted RBP18.2■□□□□ 0.5
BRCA1-223ENST00000494123 TTLL6Q8N841 843 aa18.2■□□□□ 0.5
BRCA1-223ENST00000494123 CRAMP1Q96RY5 1269 aa18.2■□□□□ 0.5
BRCA1-223ENST00000494123 ZBTB40Q9NUA8 1239 aa18.2■□□□□ 0.5
BRCA1-223ENST00000494123 BRCA1P38398 1863 aaKnown RBP18.2■□□□□ 0.5
BRCA1-223ENST00000494123 ANKRD18BA2A2Z9 1011 aa18.2■□□□□ 0.5
BRCA1-223ENST00000494123 ITGA6P23229 1130 aa18.2■□□□□ 0.5
BRCA1-223ENST00000494123 IFIT5Q13325 482 aaKnown RBP18.2■□□□□ 0.5
BRCA1-223ENST00000494123 GRAPQ13588 217 aa18.2■□□□□ 0.5
BRCA1-223ENST00000494123 GRAPLQ8TC17 118 aaPredicted RBP18.2■□□□□ 0.5
BRCA1-223ENST00000494123 CDC5LQ99459 802 aaKnown RBP18.2■□□□□ 0.5
BRCA1-223ENST00000494123 SEC31BQ9NQW1 1179 aa18.2■□□□□ 0.5
BRCA1-223ENST00000494123 TAF1P21675 1872 aa18.19■□□□□ 0.5
BRCA1-223ENST00000494123 DALRD3Q5D0E6 543 aaKnown RBP18.19■□□□□ 0.5
BRCA1-223ENST00000494123 TAF7LQ5H9L4 462 aa18.18■□□□□ 0.5
BRCA1-223ENST00000494123 PRPF40BQ6NWY9 871 aaKnown RBP18.18■□□□□ 0.5
BRCA1-223ENST00000494123 ANKRD18AQ8IVF6 992 aa18.18■□□□□ 0.5
BRCA1-223ENST00000494123 SRCAPQ6ZRS2 3230 aa18.18■□□□□ 0.5
BRCA1-223ENST00000494123 PELP1Q8IZL8 1130 aaKnown RBP18.17■□□□□ 0.5
BRCA1-223ENST00000494123 CELF1Q92879 486 aaKnown RBP18.17■□□□□ 0.5
BRCA1-223ENST00000494123 BCS1LQ9Y276 419 aa18.17■□□□□ 0.5
BRCA1-223ENST00000494123 SPEF2Q9C093 1822 aa18.17■□□□□ 0.5
BRCA1-223ENST00000494123 PPEF1O14829 653 aaPredicted RBP18.16■□□□□ 0.5
BRCA1-223ENST00000494123 SRGAP3O43295 1099 aa18.16■□□□□ 0.5
BRCA1-223ENST00000494123 NEFLP07196 543 aa18.16■□□□□ 0.5
BRCA1-223ENST00000494123 IGHMBP2P38935 993 aaKnown RBP18.16■□□□□ 0.5
BRCA1-223ENST00000494123 RPS8P62241 208 aaKnown RBP18.16■□□□□ 0.5
BRCA1-223ENST00000494123 EXOC6Q8TAG9 804 aa18.16■□□□□ 0.5
BRCA1-223ENST00000494123 TMX4Q9H1E5 349 aaPredicted RBP18.16■□□□□ 0.5
BRCA1-223ENST00000494123 BBOX1O75936 387 aa18.16■□□□□ 0.5
BRCA1-223ENST00000494123 MTX1Q13505 466 aa18.16■□□□□ 0.5
BRCA1-223ENST00000494123 ZNF219Q9P2Y4 722 aaPredicted RBP18.16■□□□□ 0.5
BRCA1-223ENST00000494123 SLX4Q8IY92 1834 aa18.15■□□□□ 0.5
BRCA1-223ENST00000494123 AAMPQ13685 434 aa18.15■□□□□ 0.5
BRCA1-223ENST00000494123 TMC4Q7Z404 712 aa18.15■□□□□ 0.5
BRCA1-223ENST00000494123 MPHOSPH8Q99549 860 aa18.15■□□□□ 0.5
BRCA1-223ENST00000494123 ATP8B2P98198 1209 aa18.14■□□□□ 0.49
BRCA1-223ENST00000494123 CEP85Q6P2H3 762 aa18.14■□□□□ 0.49
BRCA1-223ENST00000494123 RPAP2Q8IXW5 612 aaPredicted RBP18.14■□□□□ 0.49
BRCA1-223ENST00000494123 COL4A1P02462 1669 aa18.14■□□□□ 0.49
BRCA1-223ENST00000494123 ZNF594Q96JF6 807 aaPredicted RBP18.13■□□□□ 0.49
BRCA1-223ENST00000494123 ARFGEF1Q9Y6D6 1849 aa18.13■□□□□ 0.49
BRCA1-223ENST00000494123 PNMA6EA0A0J9YXQ4 647 aa18.12■□□□□ 0.49
BRCA1-223ENST00000494123 C21orf2O43822 256 aa18.12■□□□□ 0.49
BRCA1-223ENST00000494123 HMMRO75330 724 aa18.12■□□□□ 0.49
BRCA1-223ENST00000494123 GPR162Q16538 588 aa18.12■□□□□ 0.49
BRCA1-223ENST00000494123 SOGA3Q5TF21 947 aa18.12■□□□□ 0.49
BRCA1-223ENST00000494123 LDHAL6AQ6ZMR3 332 aa18.12■□□□□ 0.49
BRCA1-223ENST00000494123 KLHDC4Q8TBB5 520 aa18.12■□□□□ 0.49
BRCA1-223ENST00000494123 CNNM1Q9NRU3 951 aa18.12■□□□□ 0.49
BRCA1-223ENST00000494123 BSDC1Q9NW68 430 aaPredicted RBP18.12■□□□□ 0.49
BRCA1-223ENST00000494123 ATP6V0A2Q9Y487 856 aa18.12■□□□□ 0.49
BRCA1-223ENST00000494123 RFX5P48382 616 aaPredicted RBP18.11■□□□□ 0.49
BRCA1-223ENST00000494123 SP8Q8IXZ3 490 aa18.11■□□□□ 0.49
BRCA1-223ENST00000494123 PTPN12Q05209 780 aaKnown RBP18.1■□□□□ 0.49
BRCA1-223ENST00000494123 SSH3Q8TE77 659 aa18.1■□□□□ 0.49
BRCA1-223ENST00000494123 SIL1Q9H173 461 aa18.1■□□□□ 0.49
BRCA1-223ENST00000494123 LRRC37AA6NMS7 1700 aa18.09■□□□□ 0.49
BRCA1-223ENST00000494123 DCAF8L1A6NGE4 600 aa18.09■□□□□ 0.49
BRCA1-223ENST00000494123 POLA2Q14181 598 aa18.09■□□□□ 0.49
BRCA1-223ENST00000494123 CCDC93Q567U6 631 aa18.09■□□□□ 0.49
BRCA1-223ENST00000494123 CC2D2BQ6DHV5 1058 aa18.09■□□□□ 0.49
BRCA1-223ENST00000494123 PA2G4Q9UQ80 394 aaKnown RBP18.09■□□□□ 0.49
BRCA1-223ENST00000494123 OLFM4Q6UX06 510 aa18.09■□□□□ 0.49
BRCA1-223ENST00000494123 C7orf43Q8WVR3 580 aa18.09■□□□□ 0.49
BRCA1-223ENST00000494123 COPRSQ9NQ92 184 aa18.09■□□□□ 0.49
BRCA1-223ENST00000494123 EYA2O00167 538 aa18.08■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms