RNA–Protein interactions for RNA: ENST00000493455.6

HPS4-216, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 3

Gene HPS4, Length 986 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-216ENST00000493455 ZNF622Q969S3 477 aaKnown RBP eCLIP19.72■□□□□ 0.75
HPS4-216ENST00000493455 KAZALD1Q96I82 304 aa19.72■□□□□ 0.75
HPS4-216ENST00000493455 FHDC1Q9C0D6 1143 aaPredicted RBP19.72■□□□□ 0.75
HPS4-216ENST00000493455 RIC1Q4ADV7 1423 aa19.71■□□□□ 0.75
HPS4-216ENST00000493455 A0A0G2JLW4 131 aa19.71■□□□□ 0.75
HPS4-216ENST00000493455 H0YIN7 160 aa19.71■□□□□ 0.75
HPS4-216ENST00000493455 FAM161AQ3B820 660 aa19.71■□□□□ 0.75
HPS4-216ENST00000493455 CCDC152Q4G0S7 254 aa19.71■□□□□ 0.75
HPS4-216ENST00000493455 ANKRD44Q8N8A2 993 aa19.71■□□□□ 0.75
HPS4-216ENST00000493455 PLA2G12BQ9BX93 195 aa19.71■□□□□ 0.75
HPS4-216ENST00000493455 ZBTB40Q9NUA8 1239 aa19.71■□□□□ 0.75
HPS4-216ENST00000493455 DPEP1P16444 411 aa19.7■□□□□ 0.74
HPS4-216ENST00000493455 TTLL11Q8NHH1 800 aa19.7■□□□□ 0.74
HPS4-216ENST00000493455 GREM2Q9H772 168 aa19.7■□□□□ 0.74
HPS4-216ENST00000493455 KIAA1551Q9HCM1 1747 aa19.7■□□□□ 0.74
HPS4-216ENST00000493455 DLEC1Q9Y238 1755 aa19.7■□□□□ 0.74
HPS4-216ENST00000493455 NLGN2Q8NFZ4 835 aa19.69■□□□□ 0.74
HPS4-216ENST00000493455 SEC31BQ9NQW1 1179 aa19.69■□□□□ 0.74
HPS4-216ENST00000493455 CD2APQ9Y5K6 639 aa19.69■□□□□ 0.74
HPS4-216ENST00000493455 TAF7LQ5H9L4 462 aa19.68■□□□□ 0.74
HPS4-216ENST00000493455 DDX46Q7L014 1031 aaKnown RBP19.68■□□□□ 0.74
HPS4-216ENST00000493455 RBM17Q96I25 401 aaKnown RBP19.68■□□□□ 0.74
HPS4-216ENST00000493455 SRGAP3O43295 1099 aa19.67■□□□□ 0.74
HPS4-216ENST00000493455 NPR1P16066 1061 aa19.67■□□□□ 0.74
HPS4-216ENST00000493455 ITGA6P23229 1130 aa19.67■□□□□ 0.74
HPS4-216ENST00000493455 SF3B3Q15393 1217 aaKnown RBP19.67■□□□□ 0.74
HPS4-216ENST00000493455 CCDC57Q2TAC2 916 aa19.67■□□□□ 0.74
HPS4-216ENST00000493455 MASTLQ96GX5 879 aa19.67■□□□□ 0.74
HPS4-216ENST00000493455 ZNF219Q9P2Y4 722 aaPredicted RBP19.67■□□□□ 0.74
HPS4-216ENST00000493455 COL4A1P02462 1669 aa19.66■□□□□ 0.74
HPS4-216ENST00000493455 ANKRD18BA2A2Z9 1011 aa19.66■□□□□ 0.74
HPS4-216ENST00000493455 CSF1RP07333 972 aa19.66■□□□□ 0.74
HPS4-216ENST00000493455 SRGNP10124 158 aa19.66■□□□□ 0.74
HPS4-216ENST00000493455 IFIT5Q13325 482 aaKnown RBP19.66■□□□□ 0.74
HPS4-216ENST00000493455 CRY2Q49AN0 593 aa19.66■□□□□ 0.74
HPS4-216ENST00000493455 ZNF594Q96JF6 807 aaPredicted RBP19.66■□□□□ 0.74
HPS4-216ENST00000493455 PNMA6EA0A0J9YXQ4 647 aa19.65■□□□□ 0.74
HPS4-216ENST00000493455 TGFB2P61812 414 aa19.65■□□□□ 0.74
HPS4-216ENST00000493455 RABL6Q3YEC7 729 aaPredicted RBP19.65■□□□□ 0.74
HPS4-216ENST00000493455 CEP85Q6P2H3 762 aa19.65■□□□□ 0.74
HPS4-216ENST00000493455 KLHDC4Q8TBB5 520 aa19.65■□□□□ 0.74
HPS4-216ENST00000493455 KLRG2A4D1S0 409 aaPredicted RBP19.64■□□□□ 0.73
HPS4-216ENST00000493455 PELP1Q8IZL8 1130 aaKnown RBP19.64■□□□□ 0.73
HPS4-216ENST00000493455 CELF1Q92879 486 aaKnown RBP19.64■□□□□ 0.73
HPS4-216ENST00000493455 SYT17Q9BSW7 474 aa19.64■□□□□ 0.73
HPS4-216ENST00000493455 PDZRN3Q9UPQ7 1066 aa19.64■□□□□ 0.73
HPS4-216ENST00000493455 BRCA1P38398 1863 aaKnown RBP19.63■□□□□ 0.73
HPS4-216ENST00000493455 SLX4Q8IY92 1834 aa19.63■□□□□ 0.73
HPS4-216ENST00000493455 ATP8B2P98198 1209 aa19.63■□□□□ 0.73
HPS4-216ENST00000493455 GRAPQ13588 217 aa19.63■□□□□ 0.73
HPS4-216ENST00000493455 STYK1Q6J9G0 422 aa19.63■□□□□ 0.73
HPS4-216ENST00000493455 ANKRD18AQ8IVF6 992 aa19.63■□□□□ 0.73
HPS4-216ENST00000493455 GRAPLQ8TC17 118 aaPredicted RBP19.63■□□□□ 0.73
HPS4-216ENST00000493455 CDC5LQ99459 802 aaKnown RBP19.63■□□□□ 0.73
HPS4-216ENST00000493455 SIL1Q9H173 461 aa19.63■□□□□ 0.73
HPS4-216ENST00000493455 IGHMBP2P38935 993 aaKnown RBP19.62■□□□□ 0.73
HPS4-216ENST00000493455 PA2G4Q9UQ80 394 aaKnown RBP19.62■□□□□ 0.73
HPS4-216ENST00000493455 PCDHB15Q9Y5E8 787 aa19.62■□□□□ 0.73
HPS4-216ENST00000493455 PPEF1O14829 653 aaPredicted RBP19.61■□□□□ 0.73
HPS4-216ENST00000493455 ALDH1B1P30837 517 aa19.61■□□□□ 0.73
HPS4-216ENST00000493455 SLC51AQ86UW1 340 aa19.61■□□□□ 0.73
HPS4-216ENST00000493455 CNKSR1Q969H4 720 aa19.61■□□□□ 0.73
HPS4-216ENST00000493455 CRAMP1Q96RY5 1269 aa19.61■□□□□ 0.73
HPS4-216ENST00000493455 MPHOSPH8Q99549 860 aa19.61■□□□□ 0.73
HPS4-216ENST00000493455 PIM2Q9P1W9 311 aa19.61■□□□□ 0.73
HPS4-216ENST00000493455 BCS1LQ9Y276 419 aa19.61■□□□□ 0.73
HPS4-216ENST00000493455 RTL9Q8NET4 1388 aa19.6■□□□□ 0.73
HPS4-216ENST00000493455 HMMRO75330 724 aa19.6■□□□□ 0.73
HPS4-216ENST00000493455 KCNA3P22001 575 aa19.6■□□□□ 0.73
HPS4-216ENST00000493455 HOXA10P31260 410 aaPredicted RBP19.6■□□□□ 0.73
HPS4-216ENST00000493455 PRPF40BQ6NWY9 871 aaKnown RBP19.6■□□□□ 0.73
HPS4-216ENST00000493455 RPAP2Q8IXW5 612 aaPredicted RBP19.6■□□□□ 0.73
HPS4-216ENST00000493455 TTLL6Q8N841 843 aa19.6■□□□□ 0.73
HPS4-216ENST00000493455 CNNM1Q9NRU3 951 aa19.6■□□□□ 0.73
HPS4-216ENST00000493455 RPS8P62241 208 aaKnown RBP19.59■□□□□ 0.73
HPS4-216ENST00000493455 OS9Q13438 667 aaPredicted RBP19.59■□□□□ 0.73
HPS4-216ENST00000493455 MTX1Q13505 466 aa19.59■□□□□ 0.73
HPS4-216ENST00000493455 BCL11AQ9H165 835 aa19.59■□□□□ 0.73
HPS4-216ENST00000493455 APBB1O00213 710 aa19.58■□□□□ 0.72
HPS4-216ENST00000493455 RFX5P48382 616 aaPredicted RBP19.58■□□□□ 0.72
HPS4-216ENST00000493455 AAMPQ13685 434 aa19.58■□□□□ 0.72
HPS4-216ENST00000493455 DALRD3Q5D0E6 543 aaKnown RBP19.58■□□□□ 0.72
HPS4-216ENST00000493455 OLFM4Q6UX06 510 aa19.58■□□□□ 0.72
HPS4-216ENST00000493455 LDHAL6AQ6ZMR3 332 aa19.58■□□□□ 0.72
HPS4-216ENST00000493455 SIRT2Q8IXJ6 389 aa19.58■□□□□ 0.72
HPS4-216ENST00000493455 PUS3Q9BZE2 481 aaKnown RBP19.58■□□□□ 0.72
HPS4-216ENST00000493455 C21orf2O43822 256 aa19.57■□□□□ 0.72
HPS4-216ENST00000493455 SURF6O75683 361 aaKnown RBP19.57■□□□□ 0.72
HPS4-216ENST00000493455 PTPN12Q05209 780 aaKnown RBP19.57■□□□□ 0.72
HPS4-216ENST00000493455 POLA2Q14181 598 aa19.57■□□□□ 0.72
HPS4-216ENST00000493455 LRRC24Q50LG9 513 aa19.57■□□□□ 0.72
HPS4-216ENST00000493455 SSH3Q8TE77 659 aa19.57■□□□□ 0.72
HPS4-216ENST00000493455 TMX4Q9H1E5 349 aaPredicted RBP19.57■□□□□ 0.72
HPS4-216ENST00000493455 EXOC6BQ9Y2D4 811 aa19.56■□□□□ 0.72
HPS4-216ENST00000493455 A0A1B0GUL6 1792 aa19.55■□□□□ 0.72
HPS4-216ENST00000493455 BBOX1O75936 387 aa19.55■□□□□ 0.72
HPS4-216ENST00000493455 G3BP1Q13283 466 aaKnown RBP eCLIP19.55■□□□□ 0.72
HPS4-216ENST00000493455 HELBQ8NG08 1087 aaPredicted RBP19.55■□□□□ 0.72
HPS4-216ENST00000493455 ARFGEF1Q9Y6D6 1849 aa19.54■□□□□ 0.72
HPS4-216ENST00000493455 EYA2O00167 538 aa19.54■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 125.5 ms