RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 JDP2Q8WYK2 163 aa21.69■■□□□ 1.06
VIM-205ENST00000485947 L3MBTL3Q96JM7 780 aaPredicted RBP21.69■■□□□ 1.06
VIM-205ENST00000485947 METTL22Q9BUU2 404 aaPredicted RBP21.69■■□□□ 1.06
VIM-205ENST00000485947 ZNF277Q9NRM2 450 aaPredicted RBP21.69■■□□□ 1.06
VIM-205ENST00000485947 IQCA1LA6NCM1 817 aa21.68■■□□□ 1.06
VIM-205ENST00000485947 ATP5J2-PTCD1G3V325 749 aa21.68■■□□□ 1.06
VIM-205ENST00000485947 FZD9O00144 591 aa21.68■■□□□ 1.06
VIM-205ENST00000485947 GRAPQ13588 217 aa21.68■■□□□ 1.06
VIM-205ENST00000485947 KSR2Q6VAB6 950 aa21.68■■□□□ 1.06
VIM-205ENST00000485947 GRAPLQ8TC17 118 aaPredicted RBP21.68■■□□□ 1.06
VIM-205ENST00000485947 ABCC4O15439 1325 aa21.68■■□□□ 1.06
VIM-205ENST00000485947 EXOSC9Q06265 439 aaKnown RBP21.67■■□□□ 1.06
VIM-205ENST00000485947 OLFM4Q6UX06 510 aa21.67■■□□□ 1.06
VIM-205ENST00000485947 FAM89AQ96GI7 184 aa21.67■■□□□ 1.06
VIM-205ENST00000485947 RTFDC1Q9BY42 306 aaPredicted RBP21.67■■□□□ 1.06
VIM-205ENST00000485947 SUPT16HQ9Y5B9 1047 aaKnown RBP21.67■■□□□ 1.06
VIM-205ENST00000485947 ZNF428Q96B54 188 aa21.66■■□□□ 1.06
VIM-205ENST00000485947 POTECB2RU33 542 aa21.65■■□□□ 1.06
VIM-205ENST00000485947 IRS4O14654 1257 aaPredicted RBP21.65■■□□□ 1.06
VIM-205ENST00000485947 PCCAP05165 728 aaPredicted RBP21.65■■□□□ 1.06
VIM-205ENST00000485947 NEXNQ0ZGT2 675 aa21.65■■□□□ 1.06
VIM-205ENST00000485947 MYD88Q99836 296 aa21.65■■□□□ 1.06
VIM-205ENST00000485947 CWC25Q9NXE8 425 aaPredicted RBP21.65■■□□□ 1.06
VIM-205ENST00000485947 DDNO94850 711 aaPredicted RBP21.64■■□□□ 1.05
VIM-205ENST00000485947 SLC4A2P04920 1241 aa21.64■■□□□ 1.05
VIM-205ENST00000485947 GPC2Q8N158 579 aa21.63■■□□□ 1.05
VIM-205ENST00000485947 MAP3K2Q9Y2U5 619 aa21.63■■□□□ 1.05
VIM-205ENST00000485947 PI4KAP2A4QPH2 592 aa21.62■■□□□ 1.05
VIM-205ENST00000485947 VAMP4O75379 141 aa21.62■■□□□ 1.05
VIM-205ENST00000485947 HSPA1AP0DMV8 641 aaKnown RBP21.62■■□□□ 1.05
VIM-205ENST00000485947 HSPA1BP0DMV9 641 aaKnown RBP21.62■■□□□ 1.05
VIM-205ENST00000485947 EIF6P56537 245 aaKnown RBP21.62■■□□□ 1.05
VIM-205ENST00000485947 LARGE2Q8N3Y3 721 aa21.62■■□□□ 1.05
VIM-205ENST00000485947 MPNDQ8N594 471 aa21.62■■□□□ 1.05
VIM-205ENST00000485947 PI4KAP1Q8N8J0 262 aa21.62■■□□□ 1.05
VIM-205ENST00000485947 CDHR2Q9BYE9 1310 aa21.61■■□□□ 1.05
VIM-205ENST00000485947 DPP8Q6V1X1 898 aaPredicted RBP21.61■■□□□ 1.05
VIM-205ENST00000485947 PDE8AO60658 829 aa21.6■■□□□ 1.05
VIM-205ENST00000485947 NEFLP07196 543 aa21.6■■□□□ 1.05
VIM-205ENST00000485947 NIM1KQ8IY84 436 aa21.6■■□□□ 1.05
VIM-205ENST00000485947 TCERG1O14776 1098 aaKnown RBP21.59■■□□□ 1.05
VIM-205ENST00000485947 SLC34A2O95436 690 aa21.59■■□□□ 1.05
VIM-205ENST00000485947 RARSP54136 660 aaKnown RBP21.59■■□□□ 1.05
VIM-205ENST00000485947 FLIIQ13045 1269 aa21.59■■□□□ 1.05
VIM-205ENST00000485947 CCDC152Q4G0S7 254 aa21.59■■□□□ 1.05
VIM-205ENST00000485947 GOLGA6L2Q8N9W4 650 aaPredicted RBP21.59■■□□□ 1.05
VIM-205ENST00000485947 LAMB2P55268 1798 aa21.59■■□□□ 1.05
VIM-205ENST00000485947 ZNF541Q9H0D2 1346 aa21.58■■□□□ 1.05
VIM-205ENST00000485947 SCN4AP35499 1836 aa21.58■■□□□ 1.05
VIM-205ENST00000485947 PPIP5K2O43314 1243 aa21.58■■□□□ 1.05
VIM-205ENST00000485947 RRP1P56182 461 aaKnown RBP21.58■■□□□ 1.05
VIM-205ENST00000485947 RPS8P62241 208 aaKnown RBP21.58■■□□□ 1.05
VIM-205ENST00000485947 ALDH1L2Q3SY69 923 aa21.58■■□□□ 1.05
VIM-205ENST00000485947 PNMA8AQ86V59 439 aaPredicted RBP21.58■■□□□ 1.05
VIM-205ENST00000485947 HACL1Q9UJ83 578 aa21.58■■□□□ 1.05
VIM-205ENST00000485947 DDX60Q8IY21 1712 aaKnown RBP21.58■■□□□ 1.04
VIM-205ENST00000485947 CACNA1FO60840 1977 aa21.57■■□□□ 1.04
VIM-205ENST00000485947 KIAA2012Q0VF49 1180 aa21.57■■□□□ 1.04
VIM-205ENST00000485947 CHADLQ6NUI6 762 aa21.57■■□□□ 1.04
VIM-205ENST00000485947 TAF1DQ9H5J8 278 aaPredicted RBP21.57■■□□□ 1.04
VIM-205ENST00000485947 ZNRF3Q9ULT6 936 aa21.57■■□□□ 1.04
VIM-205ENST00000485947 IGKV5-2P06315 115 aa21.56■■□□□ 1.04
VIM-205ENST00000485947 RTL5Q5HYW3 569 aaPredicted RBP21.56■■□□□ 1.04
VIM-205ENST00000485947 LDHDQ86WU2 507 aa21.56■■□□□ 1.04
VIM-205ENST00000485947 NEURL1BA8MQ27 555 aa21.55■■□□□ 1.04
VIM-205ENST00000485947 FKBP5Q13451 457 aaPredicted RBP21.55■■□□□ 1.04
VIM-205ENST00000485947 G2E3Q7L622 706 aa21.55■■□□□ 1.04
VIM-205ENST00000485947 CELF1Q92879 486 aaKnown RBP21.55■■□□□ 1.04
VIM-205ENST00000485947 AOC3Q16853 763 aa21.54■■□□□ 1.04
VIM-205ENST00000485947 LINS1Q8NG48 757 aa21.54■■□□□ 1.04
VIM-205ENST00000485947 DNAAF4Q8WXU2 420 aa21.54■■□□□ 1.04
VIM-205ENST00000485947 H7C1W4 665 aa21.53■■□□□ 1.04
VIM-205ENST00000485947 LMOD1P29536 600 aaPredicted RBP21.53■■□□□ 1.04
VIM-205ENST00000485947 EPHX2P34913 555 aa21.53■■□□□ 1.04
VIM-205ENST00000485947 BRPF1P55201 1214 aaPredicted RBP21.53■■□□□ 1.04
VIM-205ENST00000485947 EYA3Q99504 573 aa21.53■■□□□ 1.04
VIM-205ENST00000485947 PODXL2Q9NZ53 605 aa21.53■■□□□ 1.04
VIM-205ENST00000485947 NSFL1CQ9UNZ2 370 aaKnown RBP21.53■■□□□ 1.04
VIM-205ENST00000485947 LRRC37AA6NMS7 1700 aa21.52■■□□□ 1.04
VIM-205ENST00000485947 RTL9Q8NET4 1388 aa21.52■■□□□ 1.04
VIM-205ENST00000485947 BCAR3O75815 825 aa21.52■■□□□ 1.04
VIM-205ENST00000485947 GCKRQ14397 625 aa21.52■■□□□ 1.04
VIM-205ENST00000485947 CDC5LQ99459 802 aaKnown RBP21.52■■□□□ 1.04
VIM-205ENST00000485947 PLA2G12BQ9BX93 195 aa21.52■■□□□ 1.04
VIM-205ENST00000485947 CTSWP56202 376 aa21.51■■□□□ 1.03
VIM-205ENST00000485947 TNIP1Q15025 636 aa21.51■■□□□ 1.03
VIM-205ENST00000485947 WASHC4Q2M389 1173 aa21.51■■□□□ 1.03
VIM-205ENST00000485947 SMC4Q9NTJ3 1288 aa21.51■■□□□ 1.03
VIM-205ENST00000485947 KIF16BQ96L93 1317 aa21.51■■□□□ 1.03
VIM-205ENST00000485947 COL4A5P29400 1685 aa21.5■■□□□ 1.03
VIM-205ENST00000485947 CWF19L2Q2TBE0 894 aaKnown RBP21.5■■□□□ 1.03
VIM-205ENST00000485947 ANKRD18AQ8IVF6 992 aa21.5■■□□□ 1.03
VIM-205ENST00000485947 SSH1Q8WYL5 1049 aa21.5■■□□□ 1.03
VIM-205ENST00000485947 GJA3Q9Y6H8 435 aa21.5■■□□□ 1.03
VIM-205ENST00000485947 CXCL9Q07325 125 aa21.49■■□□□ 1.03
VIM-205ENST00000485947 TTLL11Q8NHH1 800 aa21.49■■□□□ 1.03
VIM-205ENST00000485947 GTF3C3Q9Y5Q9 886 aa21.49■■□□□ 1.03
VIM-205ENST00000485947 GPSM2P81274 684 aa21.48■■□□□ 1.03
VIM-205ENST00000485947 ERICH6BQ5W0A0 696 aa21.48■■□□□ 1.03
VIM-205ENST00000485947 CIAPIN1Q6FI81 312 aa21.48■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 66.8 ms