RNA–Protein interactions for RNA: ENST00000485367.5

DDX56-212, Transcript of DEAD-box helicase 56, humanhuman

TSL 5

Gene DDX56, Length 1,781 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-212ENST00000485367 SMC1BQ8NDV3 1235 aa13.6□□□□□ -0.23
DDX56-212ENST00000485367 MYD88Q99836 296 aa13.6□□□□□ -0.23
DDX56-212ENST00000485367 ATP6V0A2Q9Y487 856 aa13.6□□□□□ -0.23
DDX56-212ENST00000485367 SNED1Q8TER0 1413 aa13.6□□□□□ -0.23
DDX56-212ENST00000485367 TAF1P21675 1872 aa13.6□□□□□ -0.23
DDX56-212ENST00000485367 DDX58O95786 925 aaKnown RBP13.6□□□□□ -0.23
DDX56-212ENST00000485367 APLP1P51693 650 aa13.6□□□□□ -0.23
DDX56-212ENST00000485367 TRIM28Q13263 835 aaKnown RBP13.6□□□□□ -0.23
DDX56-212ENST00000485367 JDP2Q8WYK2 163 aa13.6□□□□□ -0.23
DDX56-212ENST00000485367 STK31Q9BXU1 1019 aa13.6□□□□□ -0.23
DDX56-212ENST00000485367 ZNF541Q9H0D2 1346 aa13.6□□□□□ -0.23
DDX56-212ENST00000485367 DDX60Q8IY21 1712 aaKnown RBP13.59□□□□□ -0.23
DDX56-212ENST00000485367 BBOX1O75936 387 aa13.59□□□□□ -0.23
DDX56-212ENST00000485367 WDR63Q8IWG1 891 aa13.59□□□□□ -0.23
DDX56-212ENST00000485367 LARGE2Q8N3Y3 721 aa13.58□□□□□ -0.23
DDX56-212ENST00000485367 IRS4O14654 1257 aaPredicted RBP13.58□□□□□ -0.24
DDX56-212ENST00000485367 GRAPQ13588 217 aa13.58□□□□□ -0.24
DDX56-212ENST00000485367 SP8Q8IXZ3 490 aa13.58□□□□□ -0.24
DDX56-212ENST00000485367 GRAPLQ8TC17 118 aaPredicted RBP13.58□□□□□ -0.24
DDX56-212ENST00000485367 METTL22Q9BUU2 404 aaPredicted RBP13.58□□□□□ -0.24
DDX56-212ENST00000485367 MAP3K2Q9Y2U5 619 aa13.58□□□□□ -0.24
DDX56-212ENST00000485367 FZD9O00144 591 aa13.57□□□□□ -0.24
DDX56-212ENST00000485367 SLC4A2P04920 1241 aa13.57□□□□□ -0.24
DDX56-212ENST00000485367 SF3B3Q15393 1217 aaKnown RBP13.57□□□□□ -0.24
DDX56-212ENST00000485367 ZBTB38Q8NAP3 1195 aaPredicted RBP13.57□□□□□ -0.24
DDX56-212ENST00000485367 CCDC191Q8NCU4 936 aa13.57□□□□□ -0.24
DDX56-212ENST00000485367 CWC25Q9NXE8 425 aaPredicted RBP13.57□□□□□ -0.24
DDX56-212ENST00000485367 IQCA1LA6NCM1 817 aa13.56□□□□□ -0.24
DDX56-212ENST00000485367 PPIP5K2O43314 1243 aa13.56□□□□□ -0.24
DDX56-212ENST00000485367 RRP1P56182 461 aaKnown RBP13.56□□□□□ -0.24
DDX56-212ENST00000485367 EIF6P56537 245 aaKnown RBP13.56□□□□□ -0.24
DDX56-212ENST00000485367 DPP8Q6V1X1 898 aaPredicted RBP13.56□□□□□ -0.24
DDX56-212ENST00000485367 KSR2Q6VAB6 950 aa13.56□□□□□ -0.24
DDX56-212ENST00000485367 G2E3Q7L622 706 aa13.56□□□□□ -0.24
DDX56-212ENST00000485367 MPNDQ8N594 471 aa13.56□□□□□ -0.24
DDX56-212ENST00000485367 JARID2Q92833 1246 aaPredicted RBP13.56□□□□□ -0.24
DDX56-212ENST00000485367 L3MBTL3Q96JM7 780 aaPredicted RBP13.56□□□□□ -0.24
DDX56-212ENST00000485367 PI4KAP2A4QPH2 592 aa13.55□□□□□ -0.24
DDX56-212ENST00000485367 COL4A5P29400 1685 aa13.55□□□□□ -0.24
DDX56-212ENST00000485367 SCN4AP35499 1836 aa13.55□□□□□ -0.24
DDX56-212ENST00000485367 HTRA3P83110 453 aa13.55□□□□□ -0.24
DDX56-212ENST00000485367 EXOSC9Q06265 439 aaKnown RBP13.55□□□□□ -0.24
DDX56-212ENST00000485367 NIM1KQ8IY84 436 aa13.55□□□□□ -0.24
DDX56-212ENST00000485367 PI4KAP1Q8N8J0 262 aa13.55□□□□□ -0.24
DDX56-212ENST00000485367 SUPT20HQ8NEM7 779 aa13.55□□□□□ -0.24
DDX56-212ENST00000485367 DDRGK1Q96HY6 314 aa13.55□□□□□ -0.24
DDX56-212ENST00000485367 GJA3Q9Y6H8 435 aa13.55□□□□□ -0.24
DDX56-212ENST00000485367 HSP90B1P14625 803 aaKnown RBP13.55□□□□□ -0.24
DDX56-212ENST00000485367 AOC3Q16853 763 aa13.55□□□□□ -0.24
DDX56-212ENST00000485367 TMC4Q7Z404 712 aa13.55□□□□□ -0.24
DDX56-212ENST00000485367 GPC2Q8N158 579 aa13.55□□□□□ -0.24
DDX56-212ENST00000485367 CELF1Q92879 486 aaKnown RBP13.55□□□□□ -0.24
DDX56-212ENST00000485367 DAXXQ9UER7 740 aaPredicted RBP13.55□□□□□ -0.24
DDX56-212ENST00000485367 PCCAP05165 728 aaPredicted RBP13.54□□□□□ -0.24
DDX56-212ENST00000485367 POTEIP0CG38 1075 aa13.54□□□□□ -0.24
DDX56-212ENST00000485367 POTEJP0CG39 1038 aa13.54□□□□□ -0.24
DDX56-212ENST00000485367 NEXNQ0ZGT2 675 aa13.54□□□□□ -0.24
DDX56-212ENST00000485367 CHADLQ6NUI6 762 aa13.54□□□□□ -0.24
DDX56-212ENST00000485367 BACH2Q9BYV9 841 aa13.54□□□□□ -0.24
DDX56-212ENST00000485367 TAF1DQ9H5J8 278 aaPredicted RBP13.54□□□□□ -0.24
DDX56-212ENST00000485367 SPINK5Q9NQ38 1064 aaPredicted RBP13.54□□□□□ -0.24
DDX56-212ENST00000485367 HACL1Q9UJ83 578 aa13.54□□□□□ -0.24
DDX56-212ENST00000485367 VAMP4O75379 141 aa13.53□□□□□ -0.24
DDX56-212ENST00000485367 PDE4AP27815 886 aa13.53□□□□□ -0.24
DDX56-212ENST00000485367 RTFDC1Q9BY42 306 aaPredicted RBP13.53□□□□□ -0.24
DDX56-212ENST00000485367 MYH16Q9H6N6 1097 aa13.53□□□□□ -0.24
DDX56-212ENST00000485367 CACNA1FO60840 1977 aa13.53□□□□□ -0.24
DDX56-212ENST00000485367 IGKV5-2P06315 115 aa13.53□□□□□ -0.24
DDX56-212ENST00000485367 EAPPQ56P03 285 aaPredicted RBP13.53□□□□□ -0.24
DDX56-212ENST00000485367 VPS33BQ9H267 617 aa13.53□□□□□ -0.24
DDX56-212ENST00000485367 PDE8AO60658 829 aa13.52□□□□□ -0.25
DDX56-212ENST00000485367 EPHX2P34913 555 aa13.52□□□□□ -0.25
DDX56-212ENST00000485367 RPS8P62241 208 aaKnown RBP13.52□□□□□ -0.25
DDX56-212ENST00000485367 FLIIQ13045 1269 aa13.52□□□□□ -0.25
DDX56-212ENST00000485367 FKBP5Q13451 457 aaPredicted RBP13.52□□□□□ -0.25
DDX56-212ENST00000485367 DNAJC5GQ8N7S2 189 aa13.52□□□□□ -0.25
DDX56-212ENST00000485367 PKNOX2Q96KN3 472 aa13.52□□□□□ -0.25
DDX56-212ENST00000485367 CCDC85AQ96PX6 553 aaPredicted RBP13.52□□□□□ -0.25
DDX56-212ENST00000485367 SEC31BQ9NQW1 1179 aa13.52□□□□□ -0.25
DDX56-212ENST00000485367 NSFL1CQ9UNZ2 370 aaKnown RBP13.52□□□□□ -0.25
DDX56-212ENST00000485367 CWF19L2Q2TBE0 894 aaKnown RBP13.51□□□□□ -0.25
DDX56-212ENST00000485367 CCDC152Q4G0S7 254 aa13.51□□□□□ -0.25
DDX56-212ENST00000485367 LDHDQ86WU2 507 aa13.51□□□□□ -0.25
DDX56-212ENST00000485367 ZNRF3Q9ULT6 936 aa13.51□□□□□ -0.25
DDX56-212ENST00000485367 CLEC11AQ9Y240 323 aa13.51□□□□□ -0.25
DDX56-212ENST00000485367 COL4A1P02462 1669 aa13.51□□□□□ -0.25
DDX56-212ENST00000485367 LRRC37AA6NMS7 1700 aa13.51□□□□□ -0.25
DDX56-212ENST00000485367 LMOD1P29536 600 aaPredicted RBP13.5□□□□□ -0.25
DDX56-212ENST00000485367 KIAA2012Q0VF49 1180 aa13.5□□□□□ -0.25
DDX56-212ENST00000485367 RCAN3Q9UKA8 241 aa13.5□□□□□ -0.25
DDX56-212ENST00000485367 CDHR2Q9BYE9 1310 aa13.5□□□□□ -0.25
DDX56-212ENST00000485367 NEURL1BA8MQ27 555 aa13.5□□□□□ -0.25
DDX56-212ENST00000485367 C6orf229H3BNL8 230 aa13.5□□□□□ -0.25
DDX56-212ENST00000485367 GPSM2P81274 684 aa13.5□□□□□ -0.25
DDX56-212ENST00000485367 DUOX1Q9NRD9 1551 aa13.49□□□□□ -0.25
DDX56-212ENST00000485367 CXCL9Q07325 125 aa13.49□□□□□ -0.25
DDX56-212ENST00000485367 PNMA8AQ86V59 439 aaPredicted RBP13.49□□□□□ -0.25
DDX56-212ENST00000485367 DNAAF4Q8WXU2 420 aa13.49□□□□□ -0.25
DDX56-212ENST00000485367 RIMBP2O15034 1052 aa13.48□□□□□ -0.25
DDX56-212ENST00000485367 EPS15P42566 896 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms