RNA–Protein interactions for RNA: ENST00000469356.3

SREBF1-208, Transcript of sterol regulatory element binding transcription factor 1, human

TSL 3

Gene SREBF1, Length 1,323 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SREBF1-208	ENST00000469356	GNAI2	P04899	355 aa		28.76	■■■□□ 2.19
SREBF1-208	ENST00000469356	SUCLG2	Q96I99	432 aa		28.76	■■■□□ 2.19
SREBF1-208	ENST00000469356	ZBTB7B	O15156	539 aa	Predicted RBP	28.75	■■■□□ 2.19
SREBF1-208	ENST00000469356	CHRNA5	P30532	468 aa		28.75	■■■□□ 2.19
SREBF1-208	ENST00000469356	HOXA10	P31260	410 aa	Predicted RBP	28.74	■■■□□ 2.19
SREBF1-208	ENST00000469356	C20orf194	Q5TEA3	1177 aa		28.74	■■■□□ 2.19
SREBF1-208	ENST00000469356	TTLL11	Q8NHH1	800 aa		28.74	■■■□□ 2.19
SREBF1-208	ENST00000469356	CRAMP1	Q96RY5	1269 aa		28.74	■■■□□ 2.19
SREBF1-208	ENST00000469356	CSF1R	P07333	972 aa		28.73	■■■□□ 2.19
SREBF1-208	ENST00000469356	CHMP3	Q9Y3E7	222 aa		28.73	■■■□□ 2.19
SREBF1-208	ENST00000469356	TNRC6C	Q9HCJ0	1690 aa	Known RBP	28.73	■■■□□ 2.19
SREBF1-208	ENST00000469356	FOXO4	P98177	505 aa		28.72	■■■□□ 2.19
SREBF1-208	ENST00000469356	TTLL6	Q8N841	843 aa		28.72	■■■□□ 2.19
SREBF1-208	ENST00000469356	LMBR1L	Q6UX01	489 aa		28.71	■■■□□ 2.19
SREBF1-208	ENST00000469356	C3orf67	Q6ZVT6	689 aa		28.71	■■■□□ 2.19
SREBF1-208	ENST00000469356	NLGN2	Q8NFZ4	835 aa		28.71	■■■□□ 2.19
SREBF1-208	ENST00000469356	CDC5L	Q99459	802 aa	Known RBP	28.71	■■■□□ 2.19
SREBF1-208	ENST00000469356	TMX4	Q9H1E5	349 aa	Predicted RBP	28.71	■■■□□ 2.19
SREBF1-208	ENST00000469356	BICC1	Q9H694	974 aa	Known RBP	28.71	■■■□□ 2.19
SREBF1-208	ENST00000469356	LRRFIP2	Q9Y608	721 aa	Known RBP	28.71	■■■□□ 2.19
SREBF1-208	ENST00000469356	DLEC1	Q9Y238	1755 aa		28.71	■■■□□ 2.19
SREBF1-208	ENST00000469356	RTL9	Q8NET4	1388 aa		28.7	■■■□□ 2.19
SREBF1-208	ENST00000469356	CCDC57	Q2TAC2	916 aa		28.7	■■■□□ 2.19
SREBF1-208	ENST00000469356	IFIT5	Q13325	482 aa	Known RBP	28.69	■■■□□ 2.18
SREBF1-208	ENST00000469356	RABL6	Q3YEC7	729 aa	Predicted RBP	28.69	■■■□□ 2.18
SREBF1-208	ENST00000469356	DALRD3	Q5D0E6	543 aa	Known RBP	28.69	■■■□□ 2.18
SREBF1-208	ENST00000469356	ANKRD18B	A2A2Z9	1011 aa		28.69	■■■□□ 2.18
SREBF1-208	ENST00000469356	BBOX1	O75936	387 aa		28.69	■■■□□ 2.18
SREBF1-208	ENST00000469356	KCNA3	P22001	575 aa		28.69	■■■□□ 2.18
SREBF1-208	ENST00000469356	GRAP	Q13588	217 aa		28.69	■■■□□ 2.18
SREBF1-208	ENST00000469356	AAMP	Q13685	434 aa		28.69	■■■□□ 2.18
SREBF1-208	ENST00000469356	TMC4	Q7Z404	712 aa		28.69	■■■□□ 2.18
SREBF1-208	ENST00000469356	GRAPL	Q8TC17	118 aa	Predicted RBP	28.69	■■■□□ 2.18
SREBF1-208	ENST00000469356	COL11A2	P13942	1736 aa	Predicted RBP	28.68	■■■□□ 2.18
SREBF1-208	ENST00000469356	KIAA1551	Q9HCM1	1747 aa		28.68	■■■□□ 2.18
SREBF1-208	ENST00000469356	EPHA10	Q5JZY3	1008 aa		28.68	■■■□□ 2.18
SREBF1-208	ENST00000469356	KAZALD1	Q96I82	304 aa		28.68	■■■□□ 2.18
SREBF1-208	ENST00000469356	CCDC85A	Q96PX6	553 aa	Predicted RBP	28.68	■■■□□ 2.18
SREBF1-208	ENST00000469356	DCAF8L1	A6NGE4	600 aa		28.67	■■■□□ 2.18
SREBF1-208	ENST00000469356	TAF7L	Q5H9L4	462 aa		28.67	■■■□□ 2.18
SREBF1-208	ENST00000469356	ANKRD18A	Q8IVF6	992 aa		28.67	■■■□□ 2.18
SREBF1-208	ENST00000469356	GREM2	Q9H772	168 aa		28.67	■■■□□ 2.18
SREBF1-208	ENST00000469356	ITGA6	P23229	1130 aa		28.66	■■■□□ 2.18
SREBF1-208	ENST00000469356	IGHMBP2	P38935	993 aa	Known RBP	28.66	■■■□□ 2.18
SREBF1-208	ENST00000469356	ZBTB40	Q9NUA8	1239 aa		28.66	■■■□□ 2.18
SREBF1-208	ENST00000469356	RPS8	P62241	208 aa	Known RBP	28.65	■■■□□ 2.18
SREBF1-208	ENST00000469356	FAM161A	Q3B820	660 aa		28.65	■■■□□ 2.18
SREBF1-208	ENST00000469356	SOGA3	Q5TF21	947 aa		28.65	■■■□□ 2.18
SREBF1-208	ENST00000469356	CRBN	Q96SW2	442 aa		28.65	■■■□□ 2.18
SREBF1-208	ENST00000469356	ANKRD44	Q8N8A2	993 aa		28.64	■■■□□ 2.17
SREBF1-208	ENST00000469356	BCS1L	Q9Y276	419 aa		28.64	■■■□□ 2.17
SREBF1-208	ENST00000469356	BRCA1	P38398	1863 aa	Known RBP	28.63	■■■□□ 2.17
SREBF1-208	ENST00000469356	CC2D2B	Q6DHV5	1058 aa		28.63	■■■□□ 2.17
SREBF1-208	ENST00000469356	PRPF40B	Q6NWY9	871 aa	Known RBP	28.63	■■■□□ 2.17
SREBF1-208	ENST00000469356	MPHOSPH8	Q99549	860 aa		28.63	■■■□□ 2.17
SREBF1-208	ENST00000469356	SEC31B	Q9NQW1	1179 aa		28.63	■■■□□ 2.17
SREBF1-208	ENST00000469356	PPEF1	O14829	653 aa	Predicted RBP	28.62	■■■□□ 2.17
SREBF1-208	ENST00000469356	MTX1	Q13505	466 aa		28.62	■■■□□ 2.17
SREBF1-208	ENST00000469356	GRIPAP1	Q4V328	841 aa		28.62	■■■□□ 2.17
SREBF1-208	ENST00000469356	CACNA1S	Q13698	1873 aa		28.61	■■■□□ 2.17
SREBF1-208	ENST00000469356	RPAP2	Q8IXW5	612 aa	Predicted RBP	28.61	■■■□□ 2.17
SREBF1-208	ENST00000469356	NEFL	P07196	543 aa		28.6	■■■□□ 2.17
SREBF1-208	ENST00000469356	ATP8B2	P98198	1209 aa		28.6	■■■□□ 2.17
SREBF1-208	ENST00000469356	PELP1	Q8IZL8	1130 aa	Known RBP	28.6	■■■□□ 2.17
SREBF1-208	ENST00000469356	CELF1	Q92879	486 aa	Known RBP	28.6	■■■□□ 2.17
SREBF1-208	ENST00000469356	C1orf115	Q9H7X2	142 aa		28.6	■■■□□ 2.17
SREBF1-208	ENST00000469356	SRGAP3	O43295	1099 aa		28.59	■■■□□ 2.17
SREBF1-208	ENST00000469356	GPR162	Q16538	588 aa		28.59	■■■□□ 2.17
SREBF1-208	ENST00000469356	HMMR	O75330	724 aa		28.58	■■■□□ 2.17
SREBF1-208	ENST00000469356	SP8	Q8IXZ3	490 aa		28.58	■■■□□ 2.17
SREBF1-208	ENST00000469356	BSDC1	Q9NW68	430 aa	Predicted RBP	28.58	■■■□□ 2.17
SREBF1-208	ENST00000469356	SLX4	Q8IY92	1834 aa		28.58	■■■□□ 2.17
SREBF1-208	ENST00000469356	ATP6V0A2	Q9Y487	856 aa		28.57	■■■□□ 2.16
SREBF1-208	ENST00000469356	ARFGEF1	Q9Y6D6	1849 aa		28.56	■■■□□ 2.16
SREBF1-208	ENST00000469356	TAF1	P21675	1872 aa		28.56	■■■□□ 2.16
SREBF1-208	ENST00000469356	GRIN3B	O60391	1043 aa		28.56	■■■□□ 2.16
SREBF1-208	ENST00000469356	LDHAL6A	Q6ZMR3	332 aa		28.56	■■■□□ 2.16
SREBF1-208	ENST00000469356	FBXO3	Q9UK99	471 aa		28.56	■■■□□ 2.16
SREBF1-208	ENST00000469356	WWC3	Q9ULE0	1092 aa		28.56	■■■□□ 2.16
SREBF1-208	ENST00000469356	C21orf2	O43822	256 aa		28.55	■■■□□ 2.16
SREBF1-208	ENST00000469356	CCDC93	Q567U6	631 aa		28.55	■■■□□ 2.16
SREBF1-208	ENST00000469356	CEP85	Q6P2H3	762 aa		28.55	■■■□□ 2.16
SREBF1-208	ENST00000469356	CNNM1	Q9NRU3	951 aa		28.55	■■■□□ 2.16
SREBF1-208	ENST00000469356	RTKN2	Q8IZC4	609 aa		28.54	■■■□□ 2.16
SREBF1-208	ENST00000469356	ZNF219	Q9P2Y4	722 aa	Predicted RBP	28.54	■■■□□ 2.16
SREBF1-208	ENST00000469356	EXOC6	Q8TAG9	804 aa		28.52	■■■□□ 2.16
SREBF1-208	ENST00000469356	SSH3	Q8TE77	659 aa		28.52	■■■□□ 2.16
SREBF1-208	ENST00000469356	C7orf43	Q8WVR3	580 aa		28.52	■■■□□ 2.16
SREBF1-208	ENST00000469356	ANKRD2	Q9GZV1	360 aa		28.52	■■■□□ 2.16
SREBF1-208	ENST00000469356	COPRS	Q9NQ92	184 aa		28.52	■■■□□ 2.16
SREBF1-208	ENST00000469356	ZNF594	Q96JF6	807 aa	Predicted RBP	28.51	■■■□□ 2.15
SREBF1-208	ENST00000469356	PNMA6E	A0A0J9YXQ4	647 aa		28.5	■■■□□ 2.15
SREBF1-208	ENST00000469356	RFX5	P48382	616 aa	Predicted RBP	28.5	■■■□□ 2.15
SREBF1-208	ENST00000469356	IRX6	P78412	446 aa	Predicted RBP	28.5	■■■□□ 2.15
SREBF1-208	ENST00000469356	PTPN12	Q05209	780 aa	Known RBP	28.5	■■■□□ 2.15
SREBF1-208	ENST00000469356	POLA2	Q14181	598 aa		28.5	■■■□□ 2.15
SREBF1-208	ENST00000469356	MPND	Q8N594	471 aa		28.49	■■■□□ 2.15
SREBF1-208	ENST00000469356	SPEF2	Q9C093	1822 aa		28.49	■■■□□ 2.15
SREBF1-208	ENST00000469356	EYA2	O00167	538 aa		28.48	■■■□□ 2.15
SREBF1-208	ENST00000469356	CIAO1	O76071	339 aa		28.48	■■■□□ 2.15

Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms