RNA–Protein interactions for RNA: ENST00000460569.1

UPF2-204, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF2, Length 640 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-204ENST00000460569 CHMP3Q9Y3E7 222 aa12.74□□□□□ -0.37
UPF2-204ENST00000460569 CCDC152Q4G0S7 254 aa12.73□□□□□ -0.37
UPF2-204ENST00000460569 LMBR1LQ6UX01 489 aa12.73□□□□□ -0.37
UPF2-204ENST00000460569 ANKRD44Q8N8A2 993 aa12.73□□□□□ -0.37
UPF2-204ENST00000460569 RPGRQ92834 1020 aaKnown RBP12.73□□□□□ -0.37
UPF2-204ENST00000460569 BRCA1P38398 1863 aaKnown RBP12.72□□□□□ -0.37
UPF2-204ENST00000460569 SF3B3Q15393 1217 aaKnown RBP12.72□□□□□ -0.37
UPF2-204ENST00000460569 FAM161AQ3B820 660 aa12.72□□□□□ -0.37
UPF2-204ENST00000460569 RABL6Q3YEC7 729 aaPredicted RBP12.72□□□□□ -0.37
UPF2-204ENST00000460569 C2CD5Q86YS7 1000 aa12.72□□□□□ -0.37
UPF2-204ENST00000460569 TTLL11Q8NHH1 800 aa12.72□□□□□ -0.37
UPF2-204ENST00000460569 COL4A1P02462 1669 aa12.72□□□□□ -0.37
UPF2-204ENST00000460569 RTL9Q8NET4 1388 aa12.71□□□□□ -0.37
UPF2-204ENST00000460569 H0YIN7 160 aa12.71□□□□□ -0.37
UPF2-204ENST00000460569 CHRNA5P30532 468 aa12.71□□□□□ -0.37
UPF2-204ENST00000460569 CRY2Q49AN0 593 aa12.71□□□□□ -0.37
UPF2-204ENST00000460569 GREM2Q9H772 168 aa12.71□□□□□ -0.37
UPF2-204ENST00000460569 PDZRN3Q9UPQ7 1066 aa12.71□□□□□ -0.37
UPF2-204ENST00000460569 CD2APQ9Y5K6 639 aa12.71□□□□□ -0.37
UPF2-204ENST00000460569 KLRG2A4D1S0 409 aaPredicted RBP12.7□□□□□ -0.38
UPF2-204ENST00000460569 CSF1RP07333 972 aa12.7□□□□□ -0.38
UPF2-204ENST00000460569 SRGNP10124 158 aa12.7□□□□□ -0.38
UPF2-204ENST00000460569 NPR1P16066 1061 aa12.7□□□□□ -0.38
UPF2-204ENST00000460569 AAMPQ13685 434 aa12.7□□□□□ -0.38
UPF2-204ENST00000460569 CEP85Q6P2H3 762 aa12.7□□□□□ -0.38
UPF2-204ENST00000460569 DDX46Q7L014 1031 aaKnown RBP12.7□□□□□ -0.38
UPF2-204ENST00000460569 FHDC1Q9C0D6 1143 aaPredicted RBP12.7□□□□□ -0.38
UPF2-204ENST00000460569 ANKRD18BA2A2Z9 1011 aa12.69□□□□□ -0.38
UPF2-204ENST00000460569 SRGAP3O43295 1099 aa12.69□□□□□ -0.38
UPF2-204ENST00000460569 DPEP1P16444 411 aa12.69□□□□□ -0.38
UPF2-204ENST00000460569 ITGA6P23229 1130 aa12.69□□□□□ -0.38
UPF2-204ENST00000460569 TGFB2P61812 414 aa12.69□□□□□ -0.38
UPF2-204ENST00000460569 IFIT5Q13325 482 aaKnown RBP12.69□□□□□ -0.38
UPF2-204ENST00000460569 MTX1Q13505 466 aa12.69□□□□□ -0.38
UPF2-204ENST00000460569 CCDC57Q2TAC2 916 aa12.69□□□□□ -0.38
UPF2-204ENST00000460569 TAF7LQ5H9L4 462 aa12.69□□□□□ -0.38
UPF2-204ENST00000460569 ZNF622Q969S3 477 aaKnown RBP eCLIP12.69□□□□□ -0.386e-8■■■□□ 15.6
UPF2-204ENST00000460569 MASTLQ96GX5 879 aa12.69□□□□□ -0.38
UPF2-204ENST00000460569 RBM17Q96I25 401 aaKnown RBP12.69□□□□□ -0.38
UPF2-204ENST00000460569 SEC31BQ9NQW1 1179 aa12.69□□□□□ -0.38
UPF2-204ENST00000460569 A0A1B0GUL6 1792 aa12.69□□□□□ -0.38
UPF2-204ENST00000460569 LRRC37AA6NMS7 1700 aa12.68□□□□□ -0.38
UPF2-204ENST00000460569 A0A0G2JLW4 131 aa12.68□□□□□ -0.38
UPF2-204ENST00000460569 PNMA6EA0A0J9YXQ4 647 aa12.68□□□□□ -0.38
UPF2-204ENST00000460569 ATP8B2P98198 1209 aa12.68□□□□□ -0.38
UPF2-204ENST00000460569 STYK1Q6J9G0 422 aa12.68□□□□□ -0.38
UPF2-204ENST00000460569 RPAP2Q8IXW5 612 aaPredicted RBP12.68□□□□□ -0.38
UPF2-204ENST00000460569 NLGN2Q8NFZ4 835 aa12.68□□□□□ -0.38
UPF2-204ENST00000460569 CDC5LQ99459 802 aaKnown RBP12.68□□□□□ -0.38
UPF2-204ENST00000460569 SLX4Q8IY92 1834 aa12.67□□□□□ -0.38
UPF2-204ENST00000460569 HMMRO75330 724 aa12.67□□□□□ -0.38
UPF2-204ENST00000460569 HOXA10P31260 410 aaPredicted RBP12.67□□□□□ -0.38
UPF2-204ENST00000460569 GRAPQ13588 217 aa12.67□□□□□ -0.38
UPF2-204ENST00000460569 ANKRD18AQ8IVF6 992 aa12.67□□□□□ -0.38
UPF2-204ENST00000460569 GRAPLQ8TC17 118 aaPredicted RBP12.67□□□□□ -0.38
UPF2-204ENST00000460569 ZNF594Q96JF6 807 aaPredicted RBP12.67□□□□□ -0.38
UPF2-204ENST00000460569 CRAMP1Q96RY5 1269 aa12.67□□□□□ -0.38
UPF2-204ENST00000460569 PCDHB15Q9Y5E8 787 aa12.67□□□□□ -0.38
UPF2-204ENST00000460569 ALDH1B1P30837 517 aa12.66□□□□□ -0.38
UPF2-204ENST00000460569 IGHMBP2P38935 993 aaKnown RBP12.66□□□□□ -0.38
UPF2-204ENST00000460569 RFX5P48382 616 aaPredicted RBP12.66□□□□□ -0.38
UPF2-204ENST00000460569 POLA2Q14181 598 aa12.66□□□□□ -0.38
UPF2-204ENST00000460569 SIRT2Q8IXJ6 389 aa12.66□□□□□ -0.38
UPF2-204ENST00000460569 KLHDC4Q8TBB5 520 aa12.66□□□□□ -0.38
UPF2-204ENST00000460569 SSH3Q8TE77 659 aa12.66□□□□□ -0.38
UPF2-204ENST00000460569 CELF1Q92879 486 aaKnown RBP12.66□□□□□ -0.38
UPF2-204ENST00000460569 CNKSR1Q969H4 720 aa12.66□□□□□ -0.38
UPF2-204ENST00000460569 WWC3Q9ULE0 1092 aa12.66□□□□□ -0.38
UPF2-204ENST00000460569 PA2G4Q9UQ80 394 aaKnown RBP12.66□□□□□ -0.38
UPF2-204ENST00000460569 ARFGEF1Q9Y6D6 1849 aa12.65□□□□□ -0.38
UPF2-204ENST00000460569 PPEF1O14829 653 aaPredicted RBP12.65□□□□□ -0.38
UPF2-204ENST00000460569 KCNA3P22001 575 aa12.65□□□□□ -0.38
UPF2-204ENST00000460569 PRPF40BQ6NWY9 871 aaKnown RBP12.65□□□□□ -0.38
UPF2-204ENST00000460569 TTLL6Q8N841 843 aa12.65□□□□□ -0.38
UPF2-204ENST00000460569 MPHOSPH8Q99549 860 aa12.65□□□□□ -0.38
UPF2-204ENST00000460569 SYT17Q9BSW7 474 aa12.65□□□□□ -0.38
UPF2-204ENST00000460569 SIL1Q9H173 461 aa12.65□□□□□ -0.38
UPF2-204ENST00000460569 PIM2Q9P1W9 311 aa12.65□□□□□ -0.38
UPF2-204ENST00000460569 RPS8P62241 208 aaKnown RBP12.64□□□□□ -0.39
UPF2-204ENST00000460569 PTPN12Q05209 780 aaKnown RBP12.64□□□□□ -0.39
UPF2-204ENST00000460569 LDHAL6AQ6ZMR3 332 aa12.64□□□□□ -0.39
UPF2-204ENST00000460569 CNNM1Q9NRU3 951 aa12.64□□□□□ -0.39
UPF2-204ENST00000460569 BBOX1O75936 387 aa12.63□□□□□ -0.39
UPF2-204ENST00000460569 OS9Q13438 667 aaPredicted RBP12.63□□□□□ -0.39
UPF2-204ENST00000460569 PUS3Q9BZE2 481 aaKnown RBP12.63□□□□□ -0.39
UPF2-204ENST00000460569 COPRSQ9NQ92 184 aa12.63□□□□□ -0.39
UPF2-204ENST00000460569 ZNF219Q9P2Y4 722 aaPredicted RBP12.63□□□□□ -0.39
UPF2-204ENST00000460569 EYA2O00167 538 aa12.62□□□□□ -0.39
UPF2-204ENST00000460569 SURF6O75683 361 aaKnown RBP12.62□□□□□ -0.39
UPF2-204ENST00000460569 LRRC24Q50LG9 513 aa12.62□□□□□ -0.39
UPF2-204ENST00000460569 DALRD3Q5D0E6 543 aaKnown RBP12.62□□□□□ -0.39
UPF2-204ENST00000460569 ERICH6BQ5W0A0 696 aa12.62□□□□□ -0.39
UPF2-204ENST00000460569 TMC4Q7Z404 712 aa12.62□□□□□ -0.39
UPF2-204ENST00000460569 SLC51AQ86UW1 340 aa12.62□□□□□ -0.39
UPF2-204ENST00000460569 RWDD1Q9H446 243 aaPredicted RBP12.62□□□□□ -0.39
UPF2-204ENST00000460569 BSDC1Q9NW68 430 aaPredicted RBP12.62□□□□□ -0.39
UPF2-204ENST00000460569 BCS1LQ9Y276 419 aa12.62□□□□□ -0.39
UPF2-204ENST00000460569 EXOC6BQ9Y2D4 811 aa12.62□□□□□ -0.39
UPF2-204ENST00000460569 LTBP1Q14766 1721 aa12.62□□□□□ -0.39
UPF2-204ENST00000460569 G3BP1Q13283 466 aaKnown RBP eCLIP12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 199.3 ms