RNA–Protein interactions for RNA: ENST00000438581.6

TMEM39A-202, Transcript of transmembrane protein 39A, humanhuman

TSL 1 (best)

Gene TMEM39A, Length 4,393 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-202ENST00000438581 SASS6Q6UVJ0 657 aa9.55□□□□□ -0.88
TMEM39A-202ENST00000438581 SUCLG2Q96I99 432 aa9.55□□□□□ -0.88
TMEM39A-202ENST00000438581 FAM182BQ5T319 152 aa9.55□□□□□ -0.88
TMEM39A-202ENST00000438581 ESYT1Q9BSJ8 1104 aa9.55□□□□□ -0.88
TMEM39A-202ENST00000438581 USP44Q9H0E7 712 aa9.55□□□□□ -0.88
TMEM39A-202ENST00000438581 BRMS1Q9HCU9 246 aa9.55□□□□□ -0.88
TMEM39A-202ENST00000438581 TFCP2L1Q9NZI6 479 aa9.55□□□□□ -0.88
TMEM39A-202ENST00000438581 CAMSAP1Q5T5Y3 1602 aa9.55□□□□□ -0.88
TMEM39A-202ENST00000438581 TTLL7Q6ZT98 887 aa9.54□□□□□ -0.88
TMEM39A-202ENST00000438581 RAB11FIP4Q86YS3 637 aa9.54□□□□□ -0.88
TMEM39A-202ENST00000438581 CDCA7Q9BWT1 371 aaPredicted RBP9.54□□□□□ -0.88
TMEM39A-202ENST00000438581 CCNL1Q9UK58 526 aaPredicted RBP9.54□□□□□ -0.88
TMEM39A-202ENST00000438581 CCT2P78371 535 aaKnown RBP9.54□□□□□ -0.88
TMEM39A-202ENST00000438581 GCKRQ14397 625 aa9.54□□□□□ -0.88
TMEM39A-202ENST00000438581 RANBP6O60518 1105 aaKnown RBP9.54□□□□□ -0.88
TMEM39A-202ENST00000438581 GUCY1B3Q02153 619 aa9.54□□□□□ -0.88
TMEM39A-202ENST00000438581 LRRC2Q9BYS8 371 aa9.54□□□□□ -0.88
TMEM39A-202ENST00000438581 ASAP1Q9ULH1 1129 aa9.54□□□□□ -0.88
TMEM39A-202ENST00000438581 NBPF9Q3BBW0 867 aa9.54□□□□□ -0.88
TMEM39A-202ENST00000438581 TPTE2Q6XPS3 522 aa9.54□□□□□ -0.88
TMEM39A-202ENST00000438581 ERVV-2B6SEH9 535 aa9.53□□□□□ -0.88
TMEM39A-202ENST00000438581 POLR3DP05423 398 aaPredicted RBP9.53□□□□□ -0.88
TMEM39A-202ENST00000438581 LIMCH1Q9UPQ0 1083 aa9.53□□□□□ -0.88
TMEM39A-202ENST00000438581 KDM2BQ8NHM5 1336 aa9.53□□□□□ -0.88
TMEM39A-202ENST00000438581 MBD3O95983 291 aa9.53□□□□□ -0.88
TMEM39A-202ENST00000438581 ME1P48163 572 aa9.53□□□□□ -0.88
TMEM39A-202ENST00000438581 KRT85P78386 507 aa9.53□□□□□ -0.88
TMEM39A-202ENST00000438581 PRDM16Q9HAZ2 1276 aa9.53□□□□□ -0.88
TMEM39A-202ENST00000438581 CIZ1Q9ULV3 898 aaPredicted RBP9.53□□□□□ -0.88
TMEM39A-202ENST00000438581 SSFA2P28290 1259 aa9.53□□□□□ -0.88
TMEM39A-202ENST00000438581 FAM177A1Q8N128 213 aaPredicted RBP9.53□□□□□ -0.88
TMEM39A-202ENST00000438581 MKNK2Q9HBH9 465 aa9.53□□□□□ -0.88
TMEM39A-202ENST00000438581 NDUFB9Q9Y6M9 179 aa9.53□□□□□ -0.88
TMEM39A-202ENST00000438581 SLC9C2Q5TAH2 1124 aa9.52□□□□□ -0.88
TMEM39A-202ENST00000438581 PAIP2Q9BPZ3 127 aaKnown RBP9.52□□□□□ -0.88
TMEM39A-202ENST00000438581 CARD10Q9BWT7 1032 aa9.52□□□□□ -0.88
TMEM39A-202ENST00000438581 NSFL1CQ9UNZ2 370 aaKnown RBP9.52□□□□□ -0.88
TMEM39A-202ENST00000438581 JAG2Q9Y219 1238 aa9.52□□□□□ -0.88
TMEM39A-202ENST00000438581 RBM8AQ9Y5S9 174 aaKnown RBP9.52□□□□□ -0.88
TMEM39A-202ENST00000438581 KINO60870 393 aaKnown RBP9.52□□□□□ -0.89
TMEM39A-202ENST00000438581 NMIQ13287 307 aaPredicted RBP9.52□□□□□ -0.89
TMEM39A-202ENST00000438581 CCDC191Q8NCU4 936 aa9.52□□□□□ -0.89
TMEM39A-202ENST00000438581 DBNDD2Q9BQY9 259 aa9.52□□□□□ -0.89
TMEM39A-202ENST00000438581 TCEAL9Q9UHQ7 104 aa9.52□□□□□ -0.89
TMEM39A-202ENST00000438581 SH3TC1Q8TE82 1336 aa9.52□□□□□ -0.89
TMEM39A-202ENST00000438581 LETM1O95202 739 aaPredicted RBP9.52□□□□□ -0.89
TMEM39A-202ENST00000438581 HMGB2P26583 209 aaKnown RBP9.52□□□□□ -0.89
TMEM39A-202ENST00000438581 BSDC1Q9NW68 430 aaPredicted RBP9.52□□□□□ -0.89
TMEM39A-202ENST00000438581 FEZ2Q9UHY8 353 aaPredicted RBP9.52□□□□□ -0.89
TMEM39A-202ENST00000438581 ABCC4O15439 1325 aa9.52□□□□□ -0.89
TMEM39A-202ENST00000438581 SPATA31A3Q5VYP0 1347 aa9.52□□□□□ -0.89
TMEM39A-202ENST00000438581 WDR17Q8IZU2 1322 aa9.52□□□□□ -0.89
TMEM39A-202ENST00000438581 ERCC3P19447 782 aa9.52□□□□□ -0.89
TMEM39A-202ENST00000438581 KCNQ4P56696 695 aa9.52□□□□□ -0.89
TMEM39A-202ENST00000438581 DIP2BQ9P265 1576 aa9.51□□□□□ -0.89
TMEM39A-202ENST00000438581 IFIT3O14879 490 aaKnown RBP9.51□□□□□ -0.89
TMEM39A-202ENST00000438581 UQCRFS1P1P0C7P4 283 aa9.51□□□□□ -0.89
TMEM39A-202ENST00000438581 ZNF853P0CG23 659 aa9.51□□□□□ -0.89
TMEM39A-202ENST00000438581 ST5P78524 1137 aa9.51□□□□□ -0.89
TMEM39A-202ENST00000438581 TTF1Q15361 905 aaPredicted RBP9.51□□□□□ -0.89
TMEM39A-202ENST00000438581 WDR78Q5VTH9 848 aa9.51□□□□□ -0.89
TMEM39A-202ENST00000438581 CCDC144CPQ8IYA2 1237 aa9.51□□□□□ -0.89
TMEM39A-202ENST00000438581 NECAB1Q8N987 351 aa9.51□□□□□ -0.89
TMEM39A-202ENST00000438581 ZNF396Q96N95 335 aaPredicted RBP9.51□□□□□ -0.89
TMEM39A-202ENST00000438581 CCDC87Q9NVE4 849 aa9.51□□□□□ -0.89
TMEM39A-202ENST00000438581 PAG1Q9NWQ8 432 aa9.51□□□□□ -0.89
TMEM39A-202ENST00000438581 ADGRL3Q9HAR2 1447 aa9.51□□□□□ -0.89
TMEM39A-202ENST00000438581 NEURL1BA8MQ27 555 aa9.51□□□□□ -0.89
TMEM39A-202ENST00000438581 EYA2O00167 538 aa9.51□□□□□ -0.89
TMEM39A-202ENST00000438581 ITGA6P23229 1130 aa9.51□□□□□ -0.89
TMEM39A-202ENST00000438581 SLC20A2Q08357 652 aa9.51□□□□□ -0.89
TMEM39A-202ENST00000438581 TRAPPC3LQ5T215 181 aa9.51□□□□□ -0.89
TMEM39A-202ENST00000438581 NEK1Q96PY6 1258 aa9.51□□□□□ -0.89
TMEM39A-202ENST00000438581 GTPBP4Q9BZE4 634 aaKnown RBP9.51□□□□□ -0.89
TMEM39A-202ENST00000438581 CHMLP26374 656 aa9.51□□□□□ -0.89
TMEM39A-202ENST00000438581 GDPD2Q9HCC8 539 aa9.51□□□□□ -0.89
TMEM39A-202ENST00000438581 A0A1B0GUL7 405 aa9.5□□□□□ -0.89
TMEM39A-202ENST00000438581 CYP7A1P22680 504 aa9.5□□□□□ -0.89
TMEM39A-202ENST00000438581 BRF1Q92994 677 aa9.5□□□□□ -0.89
TMEM39A-202ENST00000438581 HOOK1Q9UJC3 728 aaKnown RBP9.5□□□□□ -0.89
TMEM39A-202ENST00000438581 TULP4Q9NRJ4 1543 aa9.5□□□□□ -0.89
TMEM39A-202ENST00000438581 CDK12Q9NYV4 1490 aaPredicted RBP9.5□□□□□ -0.89
TMEM39A-202ENST00000438581 TTC41PQ6P2S7 1318 aa9.5□□□□□ -0.89
TMEM39A-202ENST00000438581 F8W031 263 aaPredicted RBP9.5□□□□□ -0.89
TMEM39A-202ENST00000438581 MPHOSPH10O00566 681 aaKnown RBP9.5□□□□□ -0.89
TMEM39A-202ENST00000438581 ZRANB2O95218 330 aaKnown RBP eCLIP9.5□□□□□ -0.897e-6■■■■■ 37.3
TMEM39A-202ENST00000438581 SPATA32Q96LK8 384 aa9.5□□□□□ -0.89
TMEM39A-202ENST00000438581 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.5□□□□□ -0.892e-6■■□□□ 11.9
TMEM39A-202ENST00000438581 NASPP49321 788 aaPredicted RBP9.5□□□□□ -0.89
TMEM39A-202ENST00000438581 MCMDC2Q4G0Z9 681 aa9.5□□□□□ -0.89
TMEM39A-202ENST00000438581 QRICH2Q9H0J4 1663 aa9.5□□□□□ -0.89
TMEM39A-202ENST00000438581 NEXMIFQ5QGS0 1516 aa9.5□□□□□ -0.89
TMEM39A-202ENST00000438581 GOLGA8BA8MQT2 603 aa9.49□□□□□ -0.89
TMEM39A-202ENST00000438581 CDKL5O76039 1030 aa9.49□□□□□ -0.89
TMEM39A-202ENST00000438581 BEND3Q5T5X7 828 aa9.49□□□□□ -0.89
TMEM39A-202ENST00000438581 MPNDQ8N594 471 aa9.49□□□□□ -0.89
TMEM39A-202ENST00000438581 TMX3Q96JJ7 454 aa9.49□□□□□ -0.89
TMEM39A-202ENST00000438581 ANKARQ7Z5J8 1434 aa9.49□□□□□ -0.89
TMEM39A-202ENST00000438581 RTL1A6NKG5 1358 aa9.49□□□□□ -0.89
TMEM39A-202ENST00000438581 CYP27B1O15528 508 aa9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms