RNA–Protein interactions for RNA: ENST00000419472.1

VPS13A-207, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 1 (best)

Gene VPS13A, Length 2,781 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-207ENST00000419472 FAM126AQ9BYI3 521 aaPredicted RBP6.86□□□□□ -1.31
VPS13A-207ENST00000419472 NPHS2Q9NP85 383 aa6.86□□□□□ -1.31
VPS13A-207ENST00000419472 EMID1Q96A84 441 aaPredicted RBP6.86□□□□□ -1.31
VPS13A-207ENST00000419472 ANP32EQ9BTT0 268 aa6.86□□□□□ -1.31
VPS13A-207ENST00000419472 DNAJC25Q9H1X3 360 aa6.86□□□□□ -1.31
VPS13A-207ENST00000419472 ARHGEF10LQ9HCE6 1279 aa6.86□□□□□ -1.31
VPS13A-207ENST00000419472 FAM8A1Q9UBU6 413 aa6.86□□□□□ -1.31
VPS13A-207ENST00000419472 USP20Q9Y2K6 914 aa6.86□□□□□ -1.31
VPS13A-207ENST00000419472 C11orf91Q3C1V1 193 aa6.86□□□□□ -1.31
VPS13A-207ENST00000419472 VASH1Q7L8A9 365 aaPredicted RBP6.86□□□□□ -1.31
VPS13A-207ENST00000419472 SGSM3Q96HU1 749 aa6.86□□□□□ -1.31
VPS13A-207ENST00000419472 SOWAHBA6NEL2 793 aa6.85□□□□□ -1.31
VPS13A-207ENST00000419472 PPP1R12AO14974 1030 aaPredicted RBP6.85□□□□□ -1.31
VPS13A-207ENST00000419472 HCLS1P14317 486 aaPredicted RBP6.85□□□□□ -1.31
VPS13A-207ENST00000419472 ZEB1P37275 1124 aaPredicted RBP6.85□□□□□ -1.31
VPS13A-207ENST00000419472 ST13P50502 369 aaKnown RBP6.85□□□□□ -1.31
VPS13A-207ENST00000419472 TSR2Q969E8 191 aaKnown RBP6.85□□□□□ -1.31
VPS13A-207ENST00000419472 SPOCK3Q9BQ16 436 aa6.85□□□□□ -1.31
VPS13A-207ENST00000419472 WBP1LQ9NX94 342 aa6.85□□□□□ -1.31
VPS13A-207ENST00000419472 ZNF232Q9UNY5 417 aa6.85□□□□□ -1.31
VPS13A-207ENST00000419472 BCS1LQ9Y276 419 aa6.85□□□□□ -1.31
VPS13A-207ENST00000419472 POLR3DP05423 398 aaPredicted RBP6.85□□□□□ -1.31
VPS13A-207ENST00000419472 CCDC81Q6ZN84 652 aa6.85□□□□□ -1.31
VPS13A-207ENST00000419472 PRKAB1Q9Y478 270 aa6.85□□□□□ -1.31
VPS13A-207ENST00000419472 TNFRSF21O75509 655 aa6.84□□□□□ -1.31
VPS13A-207ENST00000419472 POTEAQ6S8J7 498 aa6.84□□□□□ -1.31
VPS13A-207ENST00000419472 KLRG1Q96E93 195 aa6.84□□□□□ -1.31
VPS13A-207ENST00000419472 ST7Q9NRC1 585 aa6.84□□□□□ -1.31
VPS13A-207ENST00000419472 BCO2Q9BYV7 579 aa6.84□□□□□ -1.31
VPS13A-207ENST00000419472 TSR3Q9UJK0 312 aaKnown RBP6.84□□□□□ -1.31
VPS13A-207ENST00000419472 CDV3Q9UKY7 258 aaKnown RBP6.84□□□□□ -1.31
VPS13A-207ENST00000419472 LEMD3Q9Y2U8 911 aa6.84□□□□□ -1.31
VPS13A-207ENST00000419472 FCF1Q9Y324 198 aaKnown RBP6.84□□□□□ -1.31
VPS13A-207ENST00000419472 ZPR1O75312 459 aa6.83□□□□□ -1.32
VPS13A-207ENST00000419472 IL2RAP01589 272 aa6.83□□□□□ -1.32
VPS13A-207ENST00000419472 SQSTM1Q13501 440 aa6.83□□□□□ -1.32
VPS13A-207ENST00000419472 APBB1IPQ7Z5R6 666 aaPredicted RBP6.83□□□□□ -1.32
VPS13A-207ENST00000419472 KIAA0907Q7Z7F0 614 aaPredicted RBP6.83□□□□□ -1.32
VPS13A-207ENST00000419472 JAMLQ86YT9 394 aa6.83□□□□□ -1.32
VPS13A-207ENST00000419472 APPBP2Q92624 585 aa6.83□□□□□ -1.32
VPS13A-207ENST00000419472 SLKQ9H2G2 1235 aaPredicted RBP6.83□□□□□ -1.32
VPS13A-207ENST00000419472 MAGEC2Q9UBF1 373 aaPredicted RBP6.83□□□□□ -1.32
VPS13A-207ENST00000419472 TARBP1Q13395 1621 aaKnown RBP6.83□□□□□ -1.32
VPS13A-207ENST00000419472 SERTM1A2A2V5 107 aa6.83□□□□□ -1.32
VPS13A-207ENST00000419472 ADH1BP00325 375 aa6.83□□□□□ -1.32
VPS13A-207ENST00000419472 ARID5BQ14865 1188 aa6.83□□□□□ -1.32
VPS13A-207ENST00000419472 FERMT3Q86UX7 667 aa6.83□□□□□ -1.32
VPS13A-207ENST00000419472 FAM169BQ8N8A8 192 aa6.83□□□□□ -1.32
VPS13A-207ENST00000419472 UBP1Q9NZI7 540 aa6.83□□□□□ -1.32
VPS13A-207ENST00000419472 LILRA1O75019 489 aa6.82□□□□□ -1.32
VPS13A-207ENST00000419472 FSHRP23945 695 aa6.82□□□□□ -1.32
VPS13A-207ENST00000419472 ADD1P35611 737 aaKnown RBP6.82□□□□□ -1.32
VPS13A-207ENST00000419472 MASP1P48740 699 aa6.82□□□□□ -1.32
VPS13A-207ENST00000419472 FAM160A1Q05DH4 1040 aa6.82□□□□□ -1.32
VPS13A-207ENST00000419472 RTN1Q16799 776 aa6.82□□□□□ -1.32
VPS13A-207ENST00000419472 FBXL19Q6PCT2 694 aa6.82□□□□□ -1.32
VPS13A-207ENST00000419472 L3MBTL2Q969R5 705 aa6.82□□□□□ -1.32
VPS13A-207ENST00000419472 PHACTR1Q9C0D0 580 aa6.82□□□□□ -1.32
VPS13A-207ENST00000419472 FBXO24O75426 580 aa6.82□□□□□ -1.32
VPS13A-207ENST00000419472 EIF4A3P38919 411 aaKnown RBP6.82□□□□□ -1.32
VPS13A-207ENST00000419472 TLR1Q15399 786 aa6.82□□□□□ -1.32
VPS13A-207ENST00000419472 ANKK1Q8NFD2 765 aa6.82□□□□□ -1.32
VPS13A-207ENST00000419472 ERBB3P21860 1342 aa6.82□□□□□ -1.32
VPS13A-207ENST00000419472 CDKN1CP49918 316 aaPredicted RBP6.81□□□□□ -1.32
VPS13A-207ENST00000419472 MAP3K10Q02779 954 aa6.81□□□□□ -1.32
VPS13A-207ENST00000419472 MAP3K11Q16584 847 aa6.81□□□□□ -1.32
VPS13A-207ENST00000419472 SMC5Q8IY18 1101 aa6.81□□□□□ -1.32
VPS13A-207ENST00000419472 ZNF296Q8WUU4 475 aaPredicted RBP6.81□□□□□ -1.32
VPS13A-207ENST00000419472 CNTN3Q9P232 1028 aa6.81□□□□□ -1.32
VPS13A-207ENST00000419472 PCSK2P16519 638 aa6.81□□□□□ -1.32
VPS13A-207ENST00000419472 GBP2P32456 591 aaPredicted RBP6.81□□□□□ -1.32
VPS13A-207ENST00000419472 SOX9P48436 509 aa6.81□□□□□ -1.32
VPS13A-207ENST00000419472 ZNF295-AS1Q8N0V1 137 aa6.81□□□□□ -1.32
VPS13A-207ENST00000419472 CHMP3Q9Y3E7 222 aa6.81□□□□□ -1.32
VPS13A-207ENST00000419472 BIVM-ERCC5R4GMW8 1640 aa6.81□□□□□ -1.32
VPS13A-207ENST00000419472 SMAD7O15105 426 aaKnown RBP6.8□□□□□ -1.32
VPS13A-207ENST00000419472 RHBDL3P58872 404 aa6.8□□□□□ -1.32
VPS13A-207ENST00000419472 TTC16Q8NEE8 873 aa6.8□□□□□ -1.32
VPS13A-207ENST00000419472 CPLX3Q8WVH0 158 aa6.8□□□□□ -1.32
VPS13A-207ENST00000419472 CABP1Q9NZU7 370 aa6.8□□□□□ -1.32
VPS13A-207ENST00000419472 PPT2Q9UMR5 302 aa6.8□□□□□ -1.32
VPS13A-207ENST00000419472 TLR6Q9Y2C9 796 aa6.8□□□□□ -1.32
VPS13A-207ENST00000419472 GNRH1P01148 92 aa6.8□□□□□ -1.32
VPS13A-207ENST00000419472 CRKP46108 304 aa6.8□□□□□ -1.32
VPS13A-207ENST00000419472 SEPT6Q14141 434 aa6.8□□□□□ -1.32
VPS13A-207ENST00000419472 C21orf62-AS1Q17RA5 79 aa6.8□□□□□ -1.32
VPS13A-207ENST00000419472 PRPF38AQ8NAV1 312 aaKnown RBP6.8□□□□□ -1.32
VPS13A-207ENST00000419472 CNKSR1Q969H4 720 aa6.8□□□□□ -1.32
VPS13A-207ENST00000419472 PRKAG3Q9UGI9 489 aa6.8□□□□□ -1.32
VPS13A-207ENST00000419472 MSRB2Q9Y3D2 182 aa6.8□□□□□ -1.32
VPS13A-207ENST00000419472 EID1Q9Y6B2 187 aa6.8□□□□□ -1.32
VPS13A-207ENST00000419472 EIF4G3O43432 1585 aaKnown RBP6.8□□□□□ -1.32
VPS13A-207ENST00000419472 SLC6A16Q9GZN6 736 aa6.8□□□□□ -1.32
VPS13A-207ENST00000419472 CREB3O43889 395 aa6.79□□□□□ -1.32
VPS13A-207ENST00000419472 TRIP4Q15650 581 aaPredicted RBP6.79□□□□□ -1.32
VPS13A-207ENST00000419472 CCDC85BQ15834 202 aaPredicted RBP6.79□□□□□ -1.32
VPS13A-207ENST00000419472 TMEM260Q9NX78 707 aa6.79□□□□□ -1.32
VPS13A-207ENST00000419472 POLA1P09884 1462 aaPredicted RBP6.79□□□□□ -1.32
VPS13A-207ENST00000419472 CDK2AP1O14519 115 aa6.79□□□□□ -1.32
VPS13A-207ENST00000419472 TRIM37O94972 964 aa6.79□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms