RNA–Protein interactions for RNA: ENST00000395794.2

CXCL12-205, Transcript of C-X-C motif chemokine ligand 12, humanhuman

TSL 1 (best) BASIC

Gene CXCL12, Length 1,052 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12-205ENST00000395794 VPS33BQ9H267 617 aa17.64■□□□□ 0.41
CXCL12-205ENST00000395794 CWC25Q9NXE8 425 aaPredicted RBP17.64■□□□□ 0.41
CXCL12-205ENST00000395794 DICER1Q9UPY3 1922 aaKnown RBP17.64■□□□□ 0.41
CXCL12-205ENST00000395794 SLC4A2P04920 1241 aa17.63■□□□□ 0.41
CXCL12-205ENST00000395794 SF3B3Q15393 1217 aaKnown RBP17.63■□□□□ 0.41
CXCL12-205ENST00000395794 KSR2Q6VAB6 950 aa17.63■□□□□ 0.41
CXCL12-205ENST00000395794 NIM1KQ8IY84 436 aa17.63■□□□□ 0.41
CXCL12-205ENST00000395794 MPNDQ8N594 471 aa17.63■□□□□ 0.41
CXCL12-205ENST00000395794 L3MBTL3Q96JM7 780 aaPredicted RBP17.63■□□□□ 0.41
CXCL12-205ENST00000395794 MAP3K2Q9Y2U5 619 aa17.63■□□□□ 0.41
CXCL12-205ENST00000395794 ZNF541Q9H0D2 1346 aa17.63■□□□□ 0.41
CXCL12-205ENST00000395794 FANCIQ9NVI1 1328 aa17.63■□□□□ 0.41
CXCL12-205ENST00000395794 WDR90Q96KV7 1748 aa17.63■□□□□ 0.41
CXCL12-205ENST00000395794 PPIP5K2O43314 1243 aa17.62■□□□□ 0.41
CXCL12-205ENST00000395794 GPC2Q8N158 579 aa17.62■□□□□ 0.41
CXCL12-205ENST00000395794 MYH16Q9H6N6 1097 aa17.62■□□□□ 0.41
CXCL12-205ENST00000395794 SNED1Q8TER0 1413 aa17.62■□□□□ 0.41
CXCL12-205ENST00000395794 PI4KAP2A4QPH2 592 aa17.61■□□□□ 0.41
CXCL12-205ENST00000395794 PI4KAP1Q8N8J0 262 aa17.61■□□□□ 0.41
CXCL12-205ENST00000395794 HACL1Q9UJ83 578 aa17.61■□□□□ 0.41
CXCL12-205ENST00000395794 GJA3Q9Y6H8 435 aa17.61■□□□□ 0.41
CXCL12-205ENST00000395794 PCCAP05165 728 aaPredicted RBP17.6■□□□□ 0.41
CXCL12-205ENST00000395794 CHADLQ6NUI6 762 aa17.6■□□□□ 0.41
CXCL12-205ENST00000395794 TAF1DQ9H5J8 278 aaPredicted RBP17.6■□□□□ 0.41
CXCL12-205ENST00000395794 CEP350Q5VT06 3117 aa17.59■□□□□ 0.41
CXCL12-205ENST00000395794 LMOD1P29536 600 aaPredicted RBP17.59■□□□□ 0.41
CXCL12-205ENST00000395794 AOC3Q16853 763 aa17.59■□□□□ 0.41
CXCL12-205ENST00000395794 CCDC152Q4G0S7 254 aa17.59■□□□□ 0.41
CXCL12-205ENST00000395794 RTFDC1Q9BY42 306 aaPredicted RBP17.59■□□□□ 0.41
CXCL12-205ENST00000395794 PDE8AO60658 829 aa17.58■□□□□ 0.4
CXCL12-205ENST00000395794 EXOSC9Q06265 439 aaKnown RBP17.58■□□□□ 0.4
CXCL12-205ENST00000395794 EAPPQ56P03 285 aaPredicted RBP17.58■□□□□ 0.4
CXCL12-205ENST00000395794 SLC51AQ86UW1 340 aa17.58■□□□□ 0.4
CXCL12-205ENST00000395794 PNMA8AQ86V59 439 aaPredicted RBP17.58■□□□□ 0.4
CXCL12-205ENST00000395794 LDHDQ86WU2 507 aa17.58■□□□□ 0.4
CXCL12-205ENST00000395794 CELF1Q92879 486 aaKnown RBP17.58■□□□□ 0.4
CXCL12-205ENST00000395794 CLEC11AQ9Y240 323 aa17.58■□□□□ 0.4
CXCL12-205ENST00000395794 EPHX2P34913 555 aa17.57■□□□□ 0.4
CXCL12-205ENST00000395794 RPS8P62241 208 aaKnown RBP17.57■□□□□ 0.4
CXCL12-205ENST00000395794 FLIIQ13045 1269 aa17.57■□□□□ 0.4
CXCL12-205ENST00000395794 FKBP5Q13451 457 aaPredicted RBP17.57■□□□□ 0.4
CXCL12-205ENST00000395794 ZNRF3Q9ULT6 936 aa17.57■□□□□ 0.4
CXCL12-205ENST00000395794 NSFL1CQ9UNZ2 370 aaKnown RBP17.57■□□□□ 0.4
CXCL12-205ENST00000395794 VAMP4O75379 141 aa17.56■□□□□ 0.4
CXCL12-205ENST00000395794 G2E3Q7L622 706 aa17.56■□□□□ 0.4
CXCL12-205ENST00000395794 JARID2Q92833 1246 aaPredicted RBP17.56■□□□□ 0.4
CXCL12-205ENST00000395794 LAMB2P55268 1798 aa17.56■□□□□ 0.4
CXCL12-205ENST00000395794 C6orf229H3BNL8 230 aa17.55■□□□□ 0.4
CXCL12-205ENST00000395794 NPM3O75607 178 aaKnown RBP17.55■□□□□ 0.4
CXCL12-205ENST00000395794 IGKV5-2P06315 115 aa17.55■□□□□ 0.4
CXCL12-205ENST00000395794 HTRA3P83110 453 aa17.55■□□□□ 0.4
CXCL12-205ENST00000395794 KIAA2012Q0VF49 1180 aa17.55■□□□□ 0.4
CXCL12-205ENST00000395794 CDHR2Q9BYE9 1310 aa17.54■□□□□ 0.4
CXCL12-205ENST00000395794 NEURL1BA8MQ27 555 aa17.54■□□□□ 0.4
CXCL12-205ENST00000395794 POTEIP0CG38 1075 aa17.54■□□□□ 0.4
CXCL12-205ENST00000395794 POTEJP0CG39 1038 aa17.54■□□□□ 0.4
CXCL12-205ENST00000395794 TNIP1Q15025 636 aa17.54■□□□□ 0.4
CXCL12-205ENST00000395794 WASHC4Q2M389 1173 aa17.54■□□□□ 0.4
CXCL12-205ENST00000395794 CWF19L2Q2TBE0 894 aaKnown RBP17.54■□□□□ 0.4
CXCL12-205ENST00000395794 DNAJC5GQ8N7S2 189 aa17.54■□□□□ 0.4
CXCL12-205ENST00000395794 EYA3Q99504 573 aa17.54■□□□□ 0.4
CXCL12-205ENST00000395794 DDX60Q8IY21 1712 aaKnown RBP17.54■□□□□ 0.4
CXCL12-205ENST00000395794 DNAAF4Q8WXU2 420 aa17.53■□□□□ 0.4
CXCL12-205ENST00000395794 CCDC85AQ96PX6 553 aaPredicted RBP17.53■□□□□ 0.4
CXCL12-205ENST00000395794 SPINK5Q9NQ38 1064 aaPredicted RBP17.53■□□□□ 0.4
CXCL12-205ENST00000395794 SEC31BQ9NQW1 1179 aa17.53■□□□□ 0.4
CXCL12-205ENST00000395794 ANKIB1Q9P2G1 1089 aa17.53■□□□□ 0.4
CXCL12-205ENST00000395794 SCN4AP35499 1836 aa17.53■□□□□ 0.4
CXCL12-205ENST00000395794 COL4A5P29400 1685 aa17.52■□□□□ 0.4
CXCL12-205ENST00000395794 CTSWP56202 376 aa17.52■□□□□ 0.4
CXCL12-205ENST00000395794 GPSM2P81274 684 aa17.52■□□□□ 0.4
CXCL12-205ENST00000395794 CXCL9Q07325 125 aa17.52■□□□□ 0.4
CXCL12-205ENST00000395794 CIAPIN1Q6FI81 312 aa17.52■□□□□ 0.4
CXCL12-205ENST00000395794 ANKRD18AQ8IVF6 992 aa17.52■□□□□ 0.4
CXCL12-205ENST00000395794 KLRG1Q96E93 195 aa17.52■□□□□ 0.4
CXCL12-205ENST00000395794 CDC5LQ99459 802 aaKnown RBP17.52■□□□□ 0.4
CXCL12-205ENST00000395794 G3V3G9 751 aa17.51■□□□□ 0.39
CXCL12-205ENST00000395794 GCKRQ14397 625 aa17.51■□□□□ 0.39
CXCL12-205ENST00000395794 DCAF8Q5TAQ9 597 aa17.51■□□□□ 0.39
CXCL12-205ENST00000395794 UBE3BQ7Z3V4 1068 aa17.51■□□□□ 0.39
CXCL12-205ENST00000395794 LINS1Q8NG48 757 aa17.51■□□□□ 0.39
CXCL12-205ENST00000395794 BCL2L13Q9BXK5 485 aa17.51■□□□□ 0.39
CXCL12-205ENST00000395794 ZC3H12CQ9C0D7 883 aaKnown RBP17.51■□□□□ 0.39
CXCL12-205ENST00000395794 RIMBP2O15034 1052 aa17.5■□□□□ 0.39
CXCL12-205ENST00000395794 RAD17O75943 681 aa17.5■□□□□ 0.39
CXCL12-205ENST00000395794 SCNN1DP51172 638 aa17.5■□□□□ 0.39
CXCL12-205ENST00000395794 POLLQ9UGP5 575 aa17.5■□□□□ 0.39
CXCL12-205ENST00000395794 H7C1W4 665 aa17.49■□□□□ 0.39
CXCL12-205ENST00000395794 EPS15P42566 896 aa17.49■□□□□ 0.39
CXCL12-205ENST00000395794 USP50Q70EL3 339 aaPredicted RBP17.49■□□□□ 0.39
CXCL12-205ENST00000395794 TTLL11Q8NHH1 800 aa17.49■□□□□ 0.39
CXCL12-205ENST00000395794 TBC1D16Q8TBP0 767 aa17.49■□□□□ 0.39
CXCL12-205ENST00000395794 CREBZFQ9NS37 354 aa17.49■□□□□ 0.39
CXCL12-205ENST00000395794 GPRC5DQ9NZD1 345 aa17.49■□□□□ 0.39
CXCL12-205ENST00000395794 GGA1Q9UJY5 639 aa17.49■□□□□ 0.39
CXCL12-205ENST00000395794 UFL1O94874 794 aa17.48■□□□□ 0.39
CXCL12-205ENST00000395794 GMPSP49915 693 aaPredicted RBP17.48■□□□□ 0.39
CXCL12-205ENST00000395794 CNTROBQ8N137 903 aa17.48■□□□□ 0.39
CXCL12-205ENST00000395794 ADARB2Q9NS39 739 aaKnown RBP17.48■□□□□ 0.39
CXCL12-205ENST00000395794 PODXL2Q9NZ53 605 aa17.48■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms