RNA–Protein interactions for RNA: ENST00000377575.2

HMGN4-201, Transcript of high mobility group nucleosomal binding domain 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGN4, Length 1,225 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4-201ENST00000377575 SF3B3Q15393 1217 aaKnown RBP21.54■■□□□ 1.04
HMGN4-201ENST00000377575 PCCAP05165 728 aaPredicted RBP21.53■■□□□ 1.04
HMGN4-201ENST00000377575 FLIIQ13045 1269 aa21.53■■□□□ 1.04
HMGN4-201ENST00000377575 JDP2Q8WYK2 163 aa21.53■■□□□ 1.04
HMGN4-201ENST00000377575 HSPA6P17066 643 aa21.52■■□□□ 1.04
HMGN4-201ENST00000377575 G2E3Q7L622 706 aa21.52■■□□□ 1.04
HMGN4-201ENST00000377575 SP8Q8IXZ3 490 aa21.52■■□□□ 1.04
HMGN4-201ENST00000377575 FKBP5Q13451 457 aaPredicted RBP21.51■■□□□ 1.03
HMGN4-201ENST00000377575 SUPT20HQ8NEM7 779 aa21.51■■□□□ 1.03
HMGN4-201ENST00000377575 FSTL1Q12841 308 aa21.5■■□□□ 1.03
HMGN4-201ENST00000377575 CDHR2Q9BYE9 1310 aa21.5■■□□□ 1.03
HMGN4-201ENST00000377575 FZD9O00144 591 aa21.49■■□□□ 1.03
HMGN4-201ENST00000377575 PDE8AO60658 829 aa21.49■■□□□ 1.03
HMGN4-201ENST00000377575 DDNO94850 711 aaPredicted RBP21.49■■□□□ 1.03
HMGN4-201ENST00000377575 IGKV5-2P06315 115 aa21.49■■□□□ 1.03
HMGN4-201ENST00000377575 DPP8Q6V1X1 898 aaPredicted RBP21.49■■□□□ 1.03
HMGN4-201ENST00000377575 SLC51AQ86UW1 340 aa21.49■■□□□ 1.03
HMGN4-201ENST00000377575 LARGE2Q8N3Y3 721 aa21.49■■□□□ 1.03
HMGN4-201ENST00000377575 VPS33BQ9H267 617 aa21.49■■□□□ 1.03
HMGN4-201ENST00000377575 COL4A5P29400 1685 aa21.49■■□□□ 1.03
HMGN4-201ENST00000377575 ZNF541Q9H0D2 1346 aa21.49■■□□□ 1.03
HMGN4-201ENST00000377575 IQCA1LA6NCM1 817 aa21.48■■□□□ 1.03
HMGN4-201ENST00000377575 NEURL1BA8MQ27 555 aa21.48■■□□□ 1.03
HMGN4-201ENST00000377575 CCDC152Q4G0S7 254 aa21.48■■□□□ 1.03
HMGN4-201ENST00000377575 MPNDQ8N594 471 aa21.48■■□□□ 1.03
HMGN4-201ENST00000377575 SMC1BQ8NDV3 1235 aa21.48■■□□□ 1.03
HMGN4-201ENST00000377575 L3MBTL3Q96JM7 780 aaPredicted RBP21.48■■□□□ 1.03
HMGN4-201ENST00000377575 COL4A1P02462 1669 aa21.47■■□□□ 1.03
HMGN4-201ENST00000377575 E9PSI1 815 aa21.47■■□□□ 1.03
HMGN4-201ENST00000377575 PPIP5K2O43314 1243 aa21.47■■□□□ 1.03
HMGN4-201ENST00000377575 CWF19L2Q2TBE0 894 aaKnown RBP21.47■■□□□ 1.03
HMGN4-201ENST00000377575 NIM1KQ8IY84 436 aa21.47■■□□□ 1.03
HMGN4-201ENST00000377575 DNAAF4Q8WXU2 420 aa21.47■■□□□ 1.03
HMGN4-201ENST00000377575 CELF1Q92879 486 aaKnown RBP21.47■■□□□ 1.03
HMGN4-201ENST00000377575 RTFDC1Q9BY42 306 aaPredicted RBP21.47■■□□□ 1.03
HMGN4-201ENST00000377575 DUOX1Q9NRD9 1551 aa21.47■■□□□ 1.03
HMGN4-201ENST00000377575 LTBP1Q14766 1721 aa21.46■■□□□ 1.03
HMGN4-201ENST00000377575 SPEF2Q9C093 1822 aa21.46■■□□□ 1.03
HMGN4-201ENST00000377575 POTECB2RU33 542 aa21.46■■□□□ 1.03
HMGN4-201ENST00000377575 EIF6P56537 245 aaKnown RBP21.46■■□□□ 1.03
HMGN4-201ENST00000377575 CEP350Q5VT06 3117 aa21.45■■□□□ 1.02
HMGN4-201ENST00000377575 AOC3Q16853 763 aa21.45■■□□□ 1.02
HMGN4-201ENST00000377575 GPC2Q8N158 579 aa21.45■■□□□ 1.02
HMGN4-201ENST00000377575 APLP1P51693 650 aa21.44■■□□□ 1.02
HMGN4-201ENST00000377575 CTSWP56202 376 aa21.44■■□□□ 1.02
HMGN4-201ENST00000377575 LINS1Q8NG48 757 aa21.44■■□□□ 1.02
HMGN4-201ENST00000377575 JARID2Q92833 1246 aaPredicted RBP21.44■■□□□ 1.02
HMGN4-201ENST00000377575 RPS8P62241 208 aaKnown RBP21.43■■□□□ 1.02
HMGN4-201ENST00000377575 GCKRQ14397 625 aa21.43■■□□□ 1.02
HMGN4-201ENST00000377575 KIAA2012Q0VF49 1180 aa21.42■■□□□ 1.02
HMGN4-201ENST00000377575 UBE3BQ7Z3V4 1068 aa21.42■■□□□ 1.02
HMGN4-201ENST00000377575 SEC31BQ9NQW1 1179 aa21.41■■□□□ 1.02
HMGN4-201ENST00000377575 HACL1Q9UJ83 578 aa21.41■■□□□ 1.02
HMGN4-201ENST00000377575 NSFL1CQ9UNZ2 370 aaKnown RBP21.41■■□□□ 1.02
HMGN4-201ENST00000377575 RTL9Q8NET4 1388 aa21.4■■□□□ 1.02
HMGN4-201ENST00000377575 H7C1W4 665 aa21.4■■□□□ 1.02
HMGN4-201ENST00000377575 SLFN5Q08AF3 891 aa21.4■■□□□ 1.02
HMGN4-201ENST00000377575 CCDC85AQ96PX6 553 aaPredicted RBP21.4■■□□□ 1.02
HMGN4-201ENST00000377575 CDC5LQ99459 802 aaKnown RBP21.4■■□□□ 1.02
HMGN4-201ENST00000377575 GJA3Q9Y6H8 435 aa21.4■■□□□ 1.02
HMGN4-201ENST00000377575 ADAMTSL1Q8N6G6 1762 aa21.39■■□□□ 1.01
HMGN4-201ENST00000377575 F6X3S4 739 aa21.39■■□□□ 1.01
HMGN4-201ENST00000377575 DIEXFQ68CQ4 756 aaKnown RBP21.39■■□□□ 1.01
HMGN4-201ENST00000377575 ANKRD18AQ8IVF6 992 aa21.39■■□□□ 1.01
HMGN4-201ENST00000377575 TAF1DQ9H5J8 278 aaPredicted RBP21.39■■□□□ 1.01
HMGN4-201ENST00000377575 ZNRF3Q9ULT6 936 aa21.39■■□□□ 1.01
HMGN4-201ENST00000377575 LMOD1P29536 600 aaPredicted RBP21.38■■□□□ 1.01
HMGN4-201ENST00000377575 GPSM2P81274 684 aa21.38■■□□□ 1.01
HMGN4-201ENST00000377575 TTLL11Q8NHH1 800 aa21.38■■□□□ 1.01
HMGN4-201ENST00000377575 EYA3Q99504 573 aa21.38■■□□□ 1.01
HMGN4-201ENST00000377575 PLA2G12BQ9BX93 195 aa21.38■■□□□ 1.01
HMGN4-201ENST00000377575 C6orf229H3BNL8 230 aa21.37■■□□□ 1.01
HMGN4-201ENST00000377575 EPHX2P34913 555 aa21.37■■□□□ 1.01
HMGN4-201ENST00000377575 WASHC4Q2M389 1173 aa21.37■■□□□ 1.01
HMGN4-201ENST00000377575 CHADLQ6NUI6 762 aa21.37■■□□□ 1.01
HMGN4-201ENST00000377575 LDHDQ86WU2 507 aa21.37■■□□□ 1.01
HMGN4-201ENST00000377575 BEND3Q5T5X7 828 aa21.36■■□□□ 1.01
HMGN4-201ENST00000377575 PNMA8AQ86V59 439 aaPredicted RBP21.36■■□□□ 1.01
HMGN4-201ENST00000377575 GREM2Q9H772 168 aa21.36■■□□□ 1.01
HMGN4-201ENST00000377575 PODXL2Q9NZ53 605 aa21.36■■□□□ 1.01
HMGN4-201ENST00000377575 ANKIB1Q9P2G1 1089 aa21.36■■□□□ 1.01
HMGN4-201ENST00000377575 CASP7P55210 303 aa21.35■■□□□ 1.01
HMGN4-201ENST00000377575 EAPPQ56P03 285 aaPredicted RBP21.35■■□□□ 1.01
HMGN4-201ENST00000377575 POLLQ9UGP5 575 aa21.35■■□□□ 1.01
HMGN4-201ENST00000377575 PTPRCP08575 1304 aa21.34■■□□□ 1.01
HMGN4-201ENST00000377575 POTEIP0CG38 1075 aa21.34■■□□□ 1.01
HMGN4-201ENST00000377575 POTEJP0CG39 1038 aa21.34■■□□□ 1.01
HMGN4-201ENST00000377575 CIAPIN1Q6FI81 312 aa21.34■■□□□ 1.01
HMGN4-201ENST00000377575 TBC1D16Q8TBP0 767 aa21.34■■□□□ 1.01
HMGN4-201ENST00000377575 CDCA7LQ96GN5 454 aa21.34■■□□□ 1.01
HMGN4-201ENST00000377575 GGA1Q9UJY5 639 aa21.34■■□□□ 1.01
HMGN4-201ENST00000377575 XDHP47989 1333 aa21.33■■□□□ 1.01
HMGN4-201ENST00000377575 ALDH1L1O75891 902 aa21.33■■□□□ 1.01
HMGN4-201ENST00000377575 UFL1O94874 794 aa21.33■■□□□ 1.01
HMGN4-201ENST00000377575 SCNN1DP51172 638 aa21.33■■□□□ 1.01
HMGN4-201ENST00000377575 CXCL9Q07325 125 aa21.33■■□□□ 1.01
HMGN4-201ENST00000377575 TNIP1Q15025 636 aa21.33■■□□□ 1.01
HMGN4-201ENST00000377575 SLC4A10Q6U841 1118 aa21.33■■□□□ 1.01
HMGN4-201ENST00000377575 MRPL50Q8N5N7 158 aaKnown RBP21.33■■□□□ 1.01
HMGN4-201ENST00000377575 PSME4Q14997 1843 aa21.32■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms