RNA–Protein interactions for RNA: ENST00000340477.9

SYNE4-202, Transcript of spectrin repeat containing nuclear envelope family member 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE4, Length 1,004 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4-202ENST00000340477 BNIP2Q12982 314 aa17.09■□□□□ 0.33
SYNE4-202ENST00000340477 PDK3Q15120 406 aa17.09■□□□□ 0.33
SYNE4-202ENST00000340477 OR7A5Q15622 319 aa17.09■□□□□ 0.33
SYNE4-202ENST00000340477 GKAP1Q5VSY0 366 aaPredicted RBP17.09■□□□□ 0.33
SYNE4-202ENST00000340477 FBXW10Q5XX13 1052 aa17.09■□□□□ 0.33
SYNE4-202ENST00000340477 ZNF474Q6S9Z5 364 aaPredicted RBP17.09■□□□□ 0.33
SYNE4-202ENST00000340477 GALNT5Q7Z7M9 940 aa17.09■□□□□ 0.33
SYNE4-202ENST00000340477 MICU2Q8IYU8 434 aa17.09■□□□□ 0.33
SYNE4-202ENST00000340477 ZNF295-AS1Q8N0V1 137 aa17.09■□□□□ 0.33
SYNE4-202ENST00000340477 TAMM41Q96BW9 452 aa17.09■□□□□ 0.33
SYNE4-202ENST00000340477 ZNF583Q96ND8 569 aa17.09■□□□□ 0.33
SYNE4-202ENST00000340477 ARHGDIGQ99819 225 aa17.09■□□□□ 0.33
SYNE4-202ENST00000340477 MCCC2Q9HCC0 563 aa17.09■□□□□ 0.33
SYNE4-202ENST00000340477 NAV2Q8IVL1 2488 aa17.08■□□□□ 0.33
SYNE4-202ENST00000340477 CCT8L1PA6NM43 557 aa17.08■□□□□ 0.32
SYNE4-202ENST00000340477 TMEM229AB2RXF0 380 aa17.08■□□□□ 0.32
SYNE4-202ENST00000340477 C16orf97H3BN30 126 aa17.08■□□□□ 0.32
SYNE4-202ENST00000340477 M0R3H8 397 aa17.08■□□□□ 0.32
SYNE4-202ENST00000340477 CASKO14936 926 aa17.08■□□□□ 0.32
SYNE4-202ENST00000340477 FPR1P21462 350 aa17.08■□□□□ 0.32
SYNE4-202ENST00000340477 HTR2AP28223 471 aa17.08■□□□□ 0.32
SYNE4-202ENST00000340477 SLC7A2P52569 658 aa17.08■□□□□ 0.32
SYNE4-202ENST00000340477 CEACAM7Q14002 265 aa17.08■□□□□ 0.32
SYNE4-202ENST00000340477 NRF1Q16656 503 aa17.08■□□□□ 0.32
SYNE4-202ENST00000340477 DUSP7Q16829 419 aa17.08■□□□□ 0.32
SYNE4-202ENST00000340477 LRRC23Q53EV4 343 aaPredicted RBP17.08■□□□□ 0.32
SYNE4-202ENST00000340477 SWT1Q5T5J6 900 aaKnown RBP17.08■□□□□ 0.32
SYNE4-202ENST00000340477 PAQR6Q6TCH4 344 aa17.08■□□□□ 0.32
SYNE4-202ENST00000340477 C6orf89Q6UWU4 347 aa17.08■□□□□ 0.32
SYNE4-202ENST00000340477 PIGWQ7Z7B1 504 aa17.08■□□□□ 0.32
SYNE4-202ENST00000340477 COMTD1Q86VU5 262 aa17.08■□□□□ 0.32
SYNE4-202ENST00000340477 ZNF100Q8IYN0 542 aa17.08■□□□□ 0.32
SYNE4-202ENST00000340477 VANGL1Q8TAA9 524 aaPredicted RBP17.08■□□□□ 0.32
SYNE4-202ENST00000340477 SLC38A4Q969I6 547 aa17.08■□□□□ 0.32
SYNE4-202ENST00000340477 DACH2Q96NX9 599 aa17.08■□□□□ 0.32
SYNE4-202ENST00000340477 EPYCQ99645 322 aa17.08■□□□□ 0.32
SYNE4-202ENST00000340477 MCHR1Q99705 422 aa17.08■□□□□ 0.32
SYNE4-202ENST00000340477 GPATCH1Q9BRR8 931 aaKnown RBP17.08■□□□□ 0.32
SYNE4-202ENST00000340477 KLHL4Q9C0H6 718 aa17.08■□□□□ 0.32
SYNE4-202ENST00000340477 C6orf203Q9P0P8 240 aaPredicted RBP17.08■□□□□ 0.32
SYNE4-202ENST00000340477 MAST4O15021 2626 aa17.07■□□□□ 0.32
SYNE4-202ENST00000340477 NOTCH2Q04721 2471 aa17.07■□□□□ 0.32
SYNE4-202ENST00000340477 IGKV3D-15A0A087WSY6 115 aa17.07■□□□□ 0.32
SYNE4-202ENST00000340477 SH3D21A4FU49 640 aa17.07■□□□□ 0.32
SYNE4-202ENST00000340477 LIPT2A6NK58 231 aa17.07■□□□□ 0.32
SYNE4-202ENST00000340477 CYSRT1A8MQ03 144 aa17.07■□□□□ 0.32
SYNE4-202ENST00000340477 GOSR1O95249 250 aa17.07■□□□□ 0.32
SYNE4-202ENST00000340477 EPXP11678 715 aa17.07■□□□□ 0.32
SYNE4-202ENST00000340477 IMPDH2P12268 514 aa17.07■□□□□ 0.32
SYNE4-202ENST00000340477 UGT2B10P36537 528 aa17.07■□□□□ 0.32
SYNE4-202ENST00000340477 LIPEQ05469 1076 aa17.07■□□□□ 0.32
SYNE4-202ENST00000340477 FAM27E3Q08E93 113 aa17.07■□□□□ 0.32
SYNE4-202ENST00000340477 OR1Q1Q15612 314 aa17.07■□□□□ 0.32
SYNE4-202ENST00000340477 OTUD3Q5T2D3 398 aaPredicted RBP17.07■□□□□ 0.32
SYNE4-202ENST00000340477 ZNF613Q6PF04 617 aa17.07■□□□□ 0.32
SYNE4-202ENST00000340477 LINC01560Q8TB33 94 aa17.07■□□□□ 0.32
SYNE4-202ENST00000340477 LZICQ8WZA0 190 aa17.07■□□□□ 0.32
SYNE4-202ENST00000340477 CCT8L2Q96SF2 557 aa17.07■□□□□ 0.32
SYNE4-202ENST00000340477 MED18Q9BUE0 208 aa17.07■□□□□ 0.32
SYNE4-202ENST00000340477 ADPRHL2Q9NX46 363 aa17.07■□□□□ 0.32
SYNE4-202ENST00000340477 CMTM6Q9NX76 183 aa17.07■□□□□ 0.32
SYNE4-202ENST00000340477 ZNF226Q9NYT6 803 aa17.07■□□□□ 0.32
SYNE4-202ENST00000340477 NOSIPQ9Y314 301 aaKnown RBP17.07■□□□□ 0.32
SYNE4-202ENST00000340477 ITPR2Q14571 2701 aa17.07■□□□□ 0.32
SYNE4-202ENST00000340477 ABCA12Q86UK0 2595 aa17.07■□□□□ 0.32
SYNE4-202ENST00000340477 A0A0B4J2E0 115 aa17.06■□□□□ 0.32
SYNE4-202ENST00000340477 A0A1B0GX12 115 aa17.06■□□□□ 0.32
SYNE4-202ENST00000340477 OR2T1O43869 369 aa17.06■□□□□ 0.32
SYNE4-202ENST00000340477 GCM2O75603 506 aaPredicted RBP17.06■□□□□ 0.32
SYNE4-202ENST00000340477 PPP3CBP16298 524 aa17.06■□□□□ 0.32
SYNE4-202ENST00000340477 CD247P20963 164 aa17.06■□□□□ 0.32
SYNE4-202ENST00000340477 SLC16A1P53985 500 aa17.06■□□□□ 0.32
SYNE4-202ENST00000340477 PSME3P61289 254 aa17.06■□□□□ 0.32
SYNE4-202ENST00000340477 TFAP2EQ6VUC0 442 aa17.06■□□□□ 0.32
SYNE4-202ENST00000340477 NUFIP2Q7Z417 695 aaKnown RBP17.06■□□□□ 0.32
SYNE4-202ENST00000340477 SLC15A3Q8IY34 581 aa17.06■□□□□ 0.32
SYNE4-202ENST00000340477 GPR32P1Q8NGA4 272 aa17.06■□□□□ 0.32
SYNE4-202ENST00000340477 ZNF300Q96RE9 604 aaPredicted RBP17.06■□□□□ 0.32
SYNE4-202ENST00000340477 ALG2Q9H553 416 aa17.06■□□□□ 0.32
SYNE4-202ENST00000340477 SPAG4Q9NPE6 437 aa17.06■□□□□ 0.32
SYNE4-202ENST00000340477 A6NNC1 897 aa17.05■□□□□ 0.32
SYNE4-202ENST00000340477 VAMP5O95183 116 aa17.05■□□□□ 0.32
SYNE4-202ENST00000340477 FAM107AO95990 144 aa17.05■□□□□ 0.32
SYNE4-202ENST00000340477 KLK2P20151 261 aa17.05■□□□□ 0.32
SYNE4-202ENST00000340477 RPS5P46782 204 aaKnown RBP17.05■□□□□ 0.32
SYNE4-202ENST00000340477 OR3A2P47893 321 aa17.05■□□□□ 0.32
SYNE4-202ENST00000340477 H3F3AP84243 136 aa17.05■□□□□ 0.32
SYNE4-202ENST00000340477 CCDC103Q8IW40 242 aa17.05■□□□□ 0.32
SYNE4-202ENST00000340477 ANKS4BQ8N8V4 417 aa17.05■□□□□ 0.32
SYNE4-202ENST00000340477 OR6T1Q8NGN1 323 aa17.05■□□□□ 0.32
SYNE4-202ENST00000340477 MFSD8Q8NHS3 518 aa17.05■□□□□ 0.32
SYNE4-202ENST00000340477 APH1AQ96BI3 265 aa17.05■□□□□ 0.32
SYNE4-202ENST00000340477 ZNF775Q96BV0 537 aaPredicted RBP17.05■□□□□ 0.32
SYNE4-202ENST00000340477 SLC25A36Q96CQ1 311 aa17.05■□□□□ 0.32
SYNE4-202ENST00000340477 KCTD14Q9BQ13 255 aaPredicted RBP17.05■□□□□ 0.32
SYNE4-202ENST00000340477 RSPO3Q9BXY4 272 aaPredicted RBP17.05■□□□□ 0.32
SYNE4-202ENST00000340477 PARPBPQ9NWS1 579 aa17.05■□□□□ 0.32
SYNE4-202ENST00000340477 NDE1Q9NXR1 346 aa17.05■□□□□ 0.32
SYNE4-202ENST00000340477 TAGLN3Q9UI15 199 aa17.05■□□□□ 0.32
SYNE4-202ENST00000340477 USP22Q9UPT9 525 aa17.05■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 101.5 ms