RNA–Protein interactions for RNA: ENST00000593764.5

SHKBP1-202, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 870 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-202ENST00000593764 BCO1Q9HAY6 547 aa16.46■□□□□ 0.23
SHKBP1-202ENST00000593764 KLHL28Q9NXS3 571 aa16.46■□□□□ 0.23
SHKBP1-202ENST00000593764 ITGB1BP2Q9UKP3 347 aa16.46■□□□□ 0.23
SHKBP1-202ENST00000593764 TRIM33Q9UPN9 1127 aa16.46■□□□□ 0.23
SHKBP1-202ENST00000593764 TMED7-TICAM2A0A0A6YYA0 188 aa16.45■□□□□ 0.22
SHKBP1-202ENST00000593764 A0A1W2PPR1 153 aa16.45■□□□□ 0.22
SHKBP1-202ENST00000593764 TMEM247A6NEH6 219 aa16.45■□□□□ 0.22
SHKBP1-202ENST00000593764 SULT2B1O00204 365 aa16.45■□□□□ 0.22
SHKBP1-202ENST00000593764 SIAH2O43255 324 aa16.45■□□□□ 0.22
SHKBP1-202ENST00000593764 CYTIPO60759 359 aa16.45■□□□□ 0.22
SHKBP1-202ENST00000593764 GOSR1O95249 250 aa16.45■□□□□ 0.22
SHKBP1-202ENST00000593764 PGM3O95394 542 aa16.45■□□□□ 0.22
SHKBP1-202ENST00000593764 YES1P07947 543 aa16.45■□□□□ 0.22
SHKBP1-202ENST00000593764 TFPIP10646 304 aa16.45■□□□□ 0.22
SHKBP1-202ENST00000593764 GPX2P18283 190 aa16.45■□□□□ 0.22
SHKBP1-202ENST00000593764 FKBP2P26885 142 aaKnown RBP16.45■□□□□ 0.22
SHKBP1-202ENST00000593764 TACR3P29371 465 aa16.45■□□□□ 0.22
SHKBP1-202ENST00000593764 TMEM201Q5SNT2 666 aa16.45■□□□□ 0.22
SHKBP1-202ENST00000593764 METTL21CQ5VZV1 264 aa16.45■□□□□ 0.22
SHKBP1-202ENST00000593764 STAC2Q6ZMT1 411 aa16.45■□□□□ 0.22
SHKBP1-202ENST00000593764 RETREG3Q86VR2 466 aa16.45■□□□□ 0.22
SHKBP1-202ENST00000593764 ZNF440Q8IYI8 595 aa16.45■□□□□ 0.22
SHKBP1-202ENST00000593764 SPATA9Q9BWV2 254 aa16.45■□□□□ 0.22
SHKBP1-202ENST00000593764 KLHL4Q9C0H6 718 aa16.45■□□□□ 0.22
SHKBP1-202ENST00000593764 TMED7Q9Y3B3 224 aa16.45■□□□□ 0.22
SHKBP1-202ENST00000593764 SPIN1Q9Y657 262 aaPredicted RBP16.45■□□□□ 0.22
SHKBP1-202ENST00000593764 TMEM72A0PK05 275 aa16.44■□□□□ 0.22
SHKBP1-202ENST00000593764 CASKO14936 926 aa16.44■□□□□ 0.22
SHKBP1-202ENST00000593764 ARAFP10398 606 aa16.44■□□□□ 0.22
SHKBP1-202ENST00000593764 PRG2P13727 222 aa16.44■□□□□ 0.22
SHKBP1-202ENST00000593764 CCNA2P20248 432 aa16.44■□□□□ 0.22
SHKBP1-202ENST00000593764 PPIBP23284 216 aaKnown RBP16.44■□□□□ 0.22
SHKBP1-202ENST00000593764 CLK1P49759 484 aaKnown RBP16.44■□□□□ 0.22
SHKBP1-202ENST00000593764 POLR2HP52434 150 aaKnown RBP16.44■□□□□ 0.22
SHKBP1-202ENST00000593764 CSNK2A1P68400 391 aaPredicted RBP16.44■□□□□ 0.22
SHKBP1-202ENST00000593764 RASGEF1BQ0VAM2 473 aa16.44■□□□□ 0.22
SHKBP1-202ENST00000593764 LARS2Q15031 903 aaKnown RBP16.44■□□□□ 0.22
SHKBP1-202ENST00000593764 ADRM1Q16186 407 aa16.44■□□□□ 0.22
SHKBP1-202ENST00000593764 RUNDC3AQ59EK9 446 aa16.44■□□□□ 0.22
SHKBP1-202ENST00000593764 ANKRD34AQ69YU3 496 aa16.44■□□□□ 0.22
SHKBP1-202ENST00000593764 CGB2Q6NT52 195 aa16.44■□□□□ 0.22
SHKBP1-202ENST00000593764 TFAP2EQ6VUC0 442 aa16.44■□□□□ 0.22
SHKBP1-202ENST00000593764 BEND4Q6ZU67 534 aa16.44■□□□□ 0.22
SHKBP1-202ENST00000593764 ZNF550Q7Z398 422 aa16.44■□□□□ 0.22
SHKBP1-202ENST00000593764 MTDHQ86UE4 582 aaKnown RBP16.44■□□□□ 0.22
SHKBP1-202ENST00000593764 DPP10Q8N608 796 aa16.44■□□□□ 0.22
SHKBP1-202ENST00000593764 DNAJA3Q96EY1 480 aa16.44■□□□□ 0.22
SHKBP1-202ENST00000593764 MED18Q9BUE0 208 aa16.44■□□□□ 0.22
SHKBP1-202ENST00000593764 TMEM120AQ9BXJ8 343 aa16.44■□□□□ 0.22
SHKBP1-202ENST00000593764 PLEKHF2Q9H8W4 249 aa16.44■□□□□ 0.22
SHKBP1-202ENST00000593764 FGFR1OP2Q9NVK5 253 aa16.44■□□□□ 0.22
SHKBP1-202ENST00000593764 KLHL9Q9P2J3 617 aa16.44■□□□□ 0.22
SHKBP1-202ENST00000593764 LEF1Q9UJU2 399 aaPredicted RBP16.44■□□□□ 0.22
SHKBP1-202ENST00000593764 PRDM4Q9UKN5 801 aa16.44■□□□□ 0.22
SHKBP1-202ENST00000593764 ZNF232Q9UNY5 417 aa16.44■□□□□ 0.22
SHKBP1-202ENST00000593764 IFT52Q9Y366 437 aa16.44■□□□□ 0.22
SHKBP1-202ENST00000593764 HDGFL3Q9Y3E1 203 aa16.44■□□□□ 0.22
SHKBP1-202ENST00000593764 UQCRHLA0A096LP55 91 aa16.43■□□□□ 0.22
SHKBP1-202ENST00000593764 DEFB108AA8MXU0 73 aa16.43■□□□□ 0.22
SHKBP1-202ENST00000593764 ZNF208O43345 1280 aa16.43■□□□□ 0.22
SHKBP1-202ENST00000593764 PMS2P2O95744 297 aa16.43■□□□□ 0.22
SHKBP1-202ENST00000593764 FESP07332 822 aa16.43■□□□□ 0.22
SHKBP1-202ENST00000593764 ETS2P15036 469 aa16.43■□□□□ 0.22
SHKBP1-202ENST00000593764 ZSWIM7Q19AV6 140 aa16.43■□□□□ 0.22
SHKBP1-202ENST00000593764 ZNF311Q5JNZ3 666 aa16.43■□□□□ 0.22
SHKBP1-202ENST00000593764 GCNT6Q5T4J0 391 aa16.43■□□□□ 0.22
SHKBP1-202ENST00000593764 STK32CQ86UX6 486 aa16.43■□□□□ 0.22
SHKBP1-202ENST00000593764 NFKBIDQ8NI38 313 aa16.43■□□□□ 0.22
SHKBP1-202ENST00000593764 BBS10Q8TAM1 723 aa16.43■□□□□ 0.22
SHKBP1-202ENST00000593764 TSPEARQ8WU66 669 aa16.43■□□□□ 0.22
SHKBP1-202ENST00000593764 ZNF775Q96BV0 537 aaPredicted RBP16.43■□□□□ 0.22
SHKBP1-202ENST00000593764 ZNF300Q96RE9 604 aaPredicted RBP16.43■□□□□ 0.22
SHKBP1-202ENST00000593764 CPPED1Q9BRF8 314 aaPredicted RBP16.43■□□□□ 0.22
SHKBP1-202ENST00000593764 TMEM38AQ9H6F2 299 aa16.43■□□□□ 0.22
SHKBP1-202ENST00000593764 NDUFAF1Q9Y375 327 aa16.43■□□□□ 0.22
SHKBP1-202ENST00000593764 HIVEP1P15822 2718 aa16.42■□□□□ 0.22
SHKBP1-202ENST00000593764 ZC3H12DA2A288 527 aaKnown RBP16.42■□□□□ 0.22
SHKBP1-202ENST00000593764 GCM2O75603 506 aaPredicted RBP16.42■□□□□ 0.22
SHKBP1-202ENST00000593764 THBDP07204 575 aa16.42■□□□□ 0.22
SHKBP1-202ENST00000593764 CRYGSP22914 178 aa16.42■□□□□ 0.22
SHKBP1-202ENST00000593764 MAP2K6P52564 334 aa16.42■□□□□ 0.22
SHKBP1-202ENST00000593764 IST1P53990 364 aa16.42■□□□□ 0.22
SHKBP1-202ENST00000593764 H3F3AP84243 136 aa16.42■□□□□ 0.22
SHKBP1-202ENST00000593764 CDK6Q00534 326 aa16.42■□□□□ 0.22
SHKBP1-202ENST00000593764 GUCY1A3Q02108 690 aa16.42■□□□□ 0.22
SHKBP1-202ENST00000593764 POU4F3Q15319 338 aa16.42■□□□□ 0.22
SHKBP1-202ENST00000593764 ABLIM2Q6H8Q1 611 aa16.42■□□□□ 0.22
SHKBP1-202ENST00000593764 REEP3Q6NUK4 255 aa16.42■□□□□ 0.22
SHKBP1-202ENST00000593764 SERPINA11Q86U17 422 aa16.42■□□□□ 0.22
SHKBP1-202ENST00000593764 GABRG1Q8N1C3 465 aa16.42■□□□□ 0.22
SHKBP1-202ENST00000593764 TACO1Q9BSH4 297 aaKnown RBP16.42■□□□□ 0.22
SHKBP1-202ENST00000593764 C6orf203Q9P0P8 240 aaPredicted RBP16.42■□□□□ 0.22
SHKBP1-202ENST00000593764 TMEM181Q9P2C4 612 aa16.42■□□□□ 0.22
SHKBP1-202ENST00000593764 NIPSNAP3AQ9UFN0 247 aaPredicted RBP16.42■□□□□ 0.22
SHKBP1-202ENST00000593764 ST6GALNAC2Q9UJ37 374 aa16.42■□□□□ 0.22
SHKBP1-202ENST00000593764 TRAPPC4Q9Y296 219 aa16.42■□□□□ 0.22
SHKBP1-202ENST00000593764 MAP1AP78559 2803 aaPredicted RBP16.42■□□□□ 0.22
SHKBP1-202ENST00000593764 F8P00451 2351 aa16.41■□□□□ 0.22
SHKBP1-202ENST00000593764 IGKV3D-15A0A087WSY6 115 aa16.41■□□□□ 0.22
SHKBP1-202ENST00000593764 ZNF724A8MTY0 619 aa16.41■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 122.3 ms