RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 CALML5Q9NZT1 146 aa6.27□□□□□ -1.41
VPS41-208ENST00000448833 TMEM181Q9P2C4 612 aa6.27□□□□□ -1.41
VPS41-208ENST00000448833 MARCOQ9UEW3 520 aaPredicted RBP6.27□□□□□ -1.41
VPS41-208ENST00000448833 GIMAP2Q9UG22 337 aa6.27□□□□□ -1.41
VPS41-208ENST00000448833 CHRNA9Q9UGM1 479 aa6.27□□□□□ -1.41
VPS41-208ENST00000448833 BTNL2Q9UIR0 455 aa6.27□□□□□ -1.41
VPS41-208ENST00000448833 NOSIPQ9Y314 301 aaKnown RBP6.27□□□□□ -1.41
VPS41-208ENST00000448833 MAGED1Q9Y5V3 778 aaPredicted RBP6.27□□□□□ -1.41
VPS41-208ENST00000448833 KCNE3Q9Y6H6 103 aa6.27□□□□□ -1.41
VPS41-208ENST00000448833 PRR14LQ5THK1 2151 aa6.27□□□□□ -1.41
VPS41-208ENST00000448833 USF3Q68DE3 2245 aa6.26□□□□□ -1.41
VPS41-208ENST00000448833 NPIPA5A0A0B4J1W7 369 aa6.26□□□□□ -1.41
VPS41-208ENST00000448833 GOLGA8QA0A0J9YX86 632 aa6.26□□□□□ -1.41
VPS41-208ENST00000448833 GOLGA8OA6NCC3 632 aa6.26□□□□□ -1.41
VPS41-208ENST00000448833 TMEM247A6NEH6 219 aa6.26□□□□□ -1.41
VPS41-208ENST00000448833 TRIM64A6NGJ6 449 aa6.26□□□□□ -1.41
VPS41-208ENST00000448833 TRIM64BA6NI03 449 aa6.26□□□□□ -1.41
VPS41-208ENST00000448833 CCDC154A6NI56 674 aa6.26□□□□□ -1.41
VPS41-208ENST00000448833 OR6C65A6NJZ3 312 aa6.26□□□□□ -1.41
VPS41-208ENST00000448833 OR5H1A6NKK0 313 aa6.26□□□□□ -1.41
VPS41-208ENST00000448833 CCT8L1PA6NM43 557 aa6.26□□□□□ -1.41
VPS41-208ENST00000448833 E9PBE3 544 aa6.26□□□□□ -1.41
VPS41-208ENST00000448833 NPIPA7E9PJI5 369 aa6.26□□□□□ -1.41
VPS41-208ENST00000448833 GOLGA8NF8WBI6 632 aa6.26□□□□□ -1.41
VPS41-208ENST00000448833 FAAHO00519 579 aa6.26□□□□□ -1.41
VPS41-208ENST00000448833 SMAD9O15198 467 aaKnown RBP6.26□□□□□ -1.41
VPS41-208ENST00000448833 ZNF208O43345 1280 aa6.26□□□□□ -1.41
VPS41-208ENST00000448833 OIP5O43482 229 aa6.26□□□□□ -1.41
VPS41-208ENST00000448833 TLX2O43763 284 aaPredicted RBP6.26□□□□□ -1.41
VPS41-208ENST00000448833 KIAA0513O60268 411 aa6.26□□□□□ -1.41
VPS41-208ENST00000448833 CPSF4O95639 269 aaKnown RBP6.26□□□□□ -1.41
VPS41-208ENST00000448833 KRT75O95678 551 aa6.26□□□□□ -1.41
VPS41-208ENST00000448833 PLAUP00749 431 aa6.26□□□□□ -1.41
VPS41-208ENST00000448833 IFNA2P01563 188 aa6.26□□□□□ -1.41
VPS41-208ENST00000448833 IL6P05231 212 aa6.26□□□□□ -1.41
VPS41-208ENST00000448833 DBIP07108 87 aaKnown RBP6.26□□□□□ -1.41
VPS41-208ENST00000448833 DANCRP0C864 163 aa6.26□□□□□ -1.41
VPS41-208ENST00000448833 NPIPA8P0DM63 369 aa6.26□□□□□ -1.41
VPS41-208ENST00000448833 OR12D1P0DN82 309 aa6.26□□□□□ -1.41
VPS41-208ENST00000448833 IL7RP16871 459 aa6.26□□□□□ -1.41
VPS41-208ENST00000448833 COX5AP20674 150 aa6.26□□□□□ -1.41
VPS41-208ENST00000448833 SHC1P29353 583 aa6.26□□□□□ -1.41
VPS41-208ENST00000448833 PGM1P36871 562 aa6.26□□□□□ -1.41
VPS41-208ENST00000448833 SLC1A3P43003 542 aa6.26□□□□□ -1.41
VPS41-208ENST00000448833 POLR2HP52434 150 aaKnown RBP6.26□□□□□ -1.41
VPS41-208ENST00000448833 SLC16A1P53985 500 aa6.26□□□□□ -1.41
VPS41-208ENST00000448833 BSPH1Q075Z2 132 aa6.26□□□□□ -1.41
VPS41-208ENST00000448833 ZNF844Q08AG5 666 aa6.26□□□□□ -1.41
VPS41-208ENST00000448833 VEZF1Q14119 521 aa6.26□□□□□ -1.41
VPS41-208ENST00000448833 STK11Q15831 433 aa6.26□□□□□ -1.41
VPS41-208ENST00000448833 SAXO2Q658L1 398 aa6.26□□□□□ -1.41
VPS41-208ENST00000448833 TYW3Q6IPR3 259 aaKnown RBP6.26□□□□□ -1.41
VPS41-208ENST00000448833 OGFOD2Q6N063 350 aa6.26□□□□□ -1.41
VPS41-208ENST00000448833 ABHD12BQ7Z5M8 362 aaPredicted RBP6.26□□□□□ -1.41
VPS41-208ENST00000448833 PEX5LQ8IYB4 626 aa6.26□□□□□ -1.41
VPS41-208ENST00000448833 CLECL1Q8IZS7 167 aa6.26□□□□□ -1.41
VPS41-208ENST00000448833 CIARTQ8N365 385 aaPredicted RBP6.26□□□□□ -1.41
VPS41-208ENST00000448833 C17orf78Q8N4C9 275 aa6.26□□□□□ -1.41
VPS41-208ENST00000448833 ZNF781Q8N8C0 355 aa6.26□□□□□ -1.41
VPS41-208ENST00000448833 LRRN4CLQ8ND94 238 aa6.26□□□□□ -1.41
VPS41-208ENST00000448833 FAM71CQ8NEG0 241 aa6.26□□□□□ -1.41
VPS41-208ENST00000448833 C1orf162Q8NEQ5 155 aaPredicted RBP6.26□□□□□ -1.41
VPS41-208ENST00000448833 RAB3IL1Q8TBN0 382 aa6.26□□□□□ -1.41
VPS41-208ENST00000448833 CCDC115Q96NT0 180 aa6.26□□□□□ -1.41
VPS41-208ENST00000448833 PANX1Q96RD7 426 aa6.26□□□□□ -1.41
VPS41-208ENST00000448833 SLC35A5Q9BS91 424 aa6.26□□□□□ -1.41
VPS41-208ENST00000448833 RHNO1Q9BSD3 238 aa6.26□□□□□ -1.41
VPS41-208ENST00000448833 CCDC106Q9BWC9 280 aa6.26□□□□□ -1.41
VPS41-208ENST00000448833 TRIM2Q9C040 744 aa6.26□□□□□ -1.41
VPS41-208ENST00000448833 FKRPQ9H9S5 495 aa6.26□□□□□ -1.41
VPS41-208ENST00000448833 MEAF6Q9HAF1 191 aa6.26□□□□□ -1.41
VPS41-208ENST00000448833 KCNK9Q9NPC2 374 aa6.26□□□□□ -1.41
VPS41-208ENST00000448833 TAS2R16Q9NYV7 291 aa6.26□□□□□ -1.41
VPS41-208ENST00000448833 UPB1Q9UBR1 384 aa6.26□□□□□ -1.41
VPS41-208ENST00000448833 HAO1Q9UJM8 370 aa6.26□□□□□ -1.41
VPS41-208ENST00000448833 ZNF232Q9UNY5 417 aa6.26□□□□□ -1.41
VPS41-208ENST00000448833 SLC9A8Q9Y2E8 581 aa6.26□□□□□ -1.41
VPS41-208ENST00000448833 CADP27708 2225 aa6.25□□□□□ -1.41
VPS41-208ENST00000448833 A0A096LPI6 279 aa6.25□□□□□ -1.41
VPS41-208ENST00000448833 IGHV3-15A0A0B4J1V0 119 aa6.25□□□□□ -1.41
VPS41-208ENST00000448833 WDR91A4D1P6 747 aa6.25□□□□□ -1.41
VPS41-208ENST00000448833 DPRXA6NFQ7 191 aa6.25□□□□□ -1.41
VPS41-208ENST00000448833 AGAP5A6NIR3 686 aa6.25□□□□□ -1.41
VPS41-208ENST00000448833 RNF223E7ERA6 249 aa6.25□□□□□ -1.41
VPS41-208ENST00000448833 ABCD4O14678 606 aa6.25□□□□□ -1.41
VPS41-208ENST00000448833 SCN2BO60939 215 aa6.25□□□□□ -1.41
VPS41-208ENST00000448833 LYZL6O75951 148 aa6.25□□□□□ -1.41
VPS41-208ENST00000448833 VAMP5O95183 116 aa6.25□□□□□ -1.41
VPS41-208ENST00000448833 PGRP06401 933 aa6.25□□□□□ -1.41
VPS41-208ENST00000448833 GPIP06744 558 aa6.25□□□□□ -1.41
VPS41-208ENST00000448833 DHRS4L1P0CG22 281 aa6.25□□□□□ -1.41
VPS41-208ENST00000448833 NR2F1P10589 423 aa6.25□□□□□ -1.41
VPS41-208ENST00000448833 IDO1P14902 403 aa6.25□□□□□ -1.41
VPS41-208ENST00000448833 IGHV1-2P23083 117 aa6.25□□□□□ -1.41
VPS41-208ENST00000448833 CXCR1P25024 350 aa6.25□□□□□ -1.41
VPS41-208ENST00000448833 PCSK6P29122 969 aa6.25□□□□□ -1.41
VPS41-208ENST00000448833 ARRB2P32121 409 aa6.25□□□□□ -1.41
VPS41-208ENST00000448833 RYKP34925 604 aa6.25□□□□□ -1.41
VPS41-208ENST00000448833 IDH2P48735 452 aaKnown RBP6.25□□□□□ -1.41
VPS41-208ENST00000448833 OR2B6P58173 313 aa6.25□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms