RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 TMPPEQ6ZT21 453 aa16.96■□□□□ 0.31
CCDC28A-203ENST00000617445 SSX8Q7RTT4 187 aa16.96■□□□□ 0.31
CCDC28A-203ENST00000617445 NUFIP2Q7Z417 695 aaKnown RBP16.96■□□□□ 0.31
CCDC28A-203ENST00000617445 GRINAQ7Z429 371 aa16.96■□□□□ 0.31
CCDC28A-203ENST00000617445 RNF130Q86XS8 419 aa16.96■□□□□ 0.31
CCDC28A-203ENST00000617445 ARFGAP2Q8N6H7 521 aa16.96■□□□□ 0.31
CCDC28A-203ENST00000617445 ZNF563Q8TA94 476 aa16.96■□□□□ 0.31
CCDC28A-203ENST00000617445 HSD17B8Q92506 261 aa16.96■□□□□ 0.31
CCDC28A-203ENST00000617445 HS3ST6Q96QI5 342 aa16.96■□□□□ 0.31
CCDC28A-203ENST00000617445 MANSC1Q9H8J5 431 aa16.96■□□□□ 0.31
CCDC28A-203ENST00000617445 MTHFD2LQ9H903 347 aaPredicted RBP16.96■□□□□ 0.31
CCDC28A-203ENST00000617445 SULT2B1O00204 365 aa16.95■□□□□ 0.3
CCDC28A-203ENST00000617445 H6PDO95479 791 aa16.95■□□□□ 0.3
CCDC28A-203ENST00000617445 CNOT4O95628 575 aaKnown RBP16.95■□□□□ 0.3
CCDC28A-203ENST00000617445 KRT75O95678 551 aa16.95■□□□□ 0.3
CCDC28A-203ENST00000617445 IL32P24001 234 aa16.95■□□□□ 0.3
CCDC28A-203ENST00000617445 HTR3AP46098 478 aa16.95■□□□□ 0.3
CCDC28A-203ENST00000617445 DIO1P49895 249 aa16.95■□□□□ 0.3
CCDC28A-203ENST00000617445 NME5P56597 212 aa16.95■□□□□ 0.3
CCDC28A-203ENST00000617445 CHRNEQ04844 493 aa16.95■□□□□ 0.3
CCDC28A-203ENST00000617445 FUT5Q11128 374 aa16.95■□□□□ 0.3
CCDC28A-203ENST00000617445 PDK3Q15120 406 aa16.95■□□□□ 0.3
CCDC28A-203ENST00000617445 PDCD4Q53EL6 469 aaKnown RBP16.95■□□□□ 0.3
CCDC28A-203ENST00000617445 LRRC74BQ6ZQY2 392 aa16.95■□□□□ 0.3
CCDC28A-203ENST00000617445 ZNF621Q6ZSS3 439 aa16.95■□□□□ 0.3
CCDC28A-203ENST00000617445 BIVMQ86UB2 503 aa16.95■□□□□ 0.3
CCDC28A-203ENST00000617445 MAELQ96JY0 434 aaKnown RBP16.95■□□□□ 0.3
CCDC28A-203ENST00000617445 C18orf12Q96KH6 178 aa16.95■□□□□ 0.3
CCDC28A-203ENST00000617445 PSD2Q9BQI7 771 aa16.95■□□□□ 0.3
CCDC28A-203ENST00000617445 CCDC106Q9BWC9 280 aa16.95■□□□□ 0.3
CCDC28A-203ENST00000617445 QRSL1Q9H0R6 528 aaKnown RBP16.95■□□□□ 0.3
CCDC28A-203ENST00000617445 WDR55Q9H6Y2 383 aaPredicted RBP16.95■□□□□ 0.3
CCDC28A-203ENST00000617445 CHRNA9Q9UGM1 479 aa16.95■□□□□ 0.3
CCDC28A-203ENST00000617445 HDGFL3Q9Y3E1 203 aa16.95■□□□□ 0.3
CCDC28A-203ENST00000617445 GOLGA8QA0A0J9YX86 632 aa16.94■□□□□ 0.3
CCDC28A-203ENST00000617445 GOLGA8OA6NCC3 632 aa16.94■□□□□ 0.3
CCDC28A-203ENST00000617445 GOLGA8NF8WBI6 632 aa16.94■□□□□ 0.3
CCDC28A-203ENST00000617445 SMAD9O15198 467 aaKnown RBP16.94■□□□□ 0.3
CCDC28A-203ENST00000617445 DNPH1O43598 174 aa16.94■□□□□ 0.3
CCDC28A-203ENST00000617445 SLC22A3O75751 556 aa16.94■□□□□ 0.3
CCDC28A-203ENST00000617445 IL12AP29459 219 aa16.94■□□□□ 0.3
CCDC28A-203ENST00000617445 OR3A2P47893 321 aa16.94■□□□□ 0.3
CCDC28A-203ENST00000617445 MAP2K6P52564 334 aa16.94■□□□□ 0.3
CCDC28A-203ENST00000617445 MAGOHP61326 146 aaKnown RBP16.94■□□□□ 0.3
CCDC28A-203ENST00000617445 ITGADQ13349 1161 aa16.94■□□□□ 0.3
CCDC28A-203ENST00000617445 GSTA3Q16772 222 aa16.94■□□□□ 0.3
CCDC28A-203ENST00000617445 KRTAP21-3Q3LHN1 58 aa16.94■□□□□ 0.3
CCDC28A-203ENST00000617445 ZNF704Q6ZNC4 412 aaPredicted RBP16.94■□□□□ 0.3
CCDC28A-203ENST00000617445 Q6ZT83 130 aa16.94■□□□□ 0.3
CCDC28A-203ENST00000617445 OLIG3Q7RTU3 272 aa16.94■□□□□ 0.3
CCDC28A-203ENST00000617445 MTDHQ86UE4 582 aaKnown RBP16.94■□□□□ 0.3
CCDC28A-203ENST00000617445 WFDC8Q8IUA0 241 aa16.94■□□□□ 0.3
CCDC28A-203ENST00000617445 MGARPQ8TDB4 240 aa16.94■□□□□ 0.3
CCDC28A-203ENST00000617445 KISS1RQ969F8 398 aaPredicted RBP16.94■□□□□ 0.3
CCDC28A-203ENST00000617445 S100PBPQ96BU1 408 aa16.94■□□□□ 0.3
CCDC28A-203ENST00000617445 TLCD1Q96CP7 247 aa16.94■□□□□ 0.3
CCDC28A-203ENST00000617445 ZG16BQ96DA0 208 aa16.94■□□□□ 0.3
CCDC28A-203ENST00000617445 ZHX1-C8orf76Q96EF9 292 aa16.94■□□□□ 0.3
CCDC28A-203ENST00000617445 PLPPR2Q96GM1 343 aa16.94■□□□□ 0.3
CCDC28A-203ENST00000617445 TMEM204Q9BSN7 226 aa16.94■□□□□ 0.3
CCDC28A-203ENST00000617445 EMC3Q9P0I2 261 aa16.94■□□□□ 0.3
CCDC28A-203ENST00000617445 ING1Q9UK53 422 aaPredicted RBP16.94■□□□□ 0.3
CCDC28A-203ENST00000617445 IGHV3-15A0A0B4J1V0 119 aa16.93■□□□□ 0.3
CCDC28A-203ENST00000617445 PRAMEF27A3QJZ7 478 aa16.93■□□□□ 0.3
CCDC28A-203ENST00000617445 AGAP5A6NIR3 686 aa16.93■□□□□ 0.3
CCDC28A-203ENST00000617445 RFXANKO14593 260 aa16.93■□□□□ 0.3
CCDC28A-203ENST00000617445 KLF11O14901 512 aa16.93■□□□□ 0.3
CCDC28A-203ENST00000617445 PMS2P2O95744 297 aa16.93■□□□□ 0.3
CCDC28A-203ENST00000617445 ADAP00813 363 aa16.93■□□□□ 0.3
CCDC28A-203ENST00000617445 KITP10721 976 aa16.93■□□□□ 0.3
CCDC28A-203ENST00000617445 NXNQ6DKJ4 435 aa16.93■□□□□ 0.3
CCDC28A-203ENST00000617445 MSANTD1Q6ZTZ1 278 aa16.93■□□□□ 0.3
CCDC28A-203ENST00000617445 GALNT5Q7Z7M9 940 aa16.93■□□□□ 0.3
CCDC28A-203ENST00000617445 KRTAP1-3Q8IUG1 177 aa16.93■□□□□ 0.3
CCDC28A-203ENST00000617445 PIWIL2Q8TC59 973 aaKnown RBP16.93■□□□□ 0.3
CCDC28A-203ENST00000617445 ZBTB9Q96C00 473 aa16.93■□□□□ 0.3
CCDC28A-203ENST00000617445 INPP5KQ9BT40 448 aa16.93■□□□□ 0.3
CCDC28A-203ENST00000617445 SLC38A1Q9H2H9 487 aa16.93■□□□□ 0.3
CCDC28A-203ENST00000617445 TMBIM4Q9HC24 238 aa16.93■□□□□ 0.3
CCDC28A-203ENST00000617445 ZIM2Q9NZV7 527 aa16.93■□□□□ 0.3
CCDC28A-203ENST00000617445 CADP27708 2225 aa16.93■□□□□ 0.3
CCDC28A-203ENST00000617445 VPS13CQ709C8 3753 aa16.92■□□□□ 0.3
CCDC28A-203ENST00000617445 USF3Q68DE3 2245 aa16.92■□□□□ 0.3
CCDC28A-203ENST00000617445 IGKV3D-15A0A087WSY6 115 aa16.92■□□□□ 0.3
CCDC28A-203ENST00000617445 FAM171A2A8MVW0 826 aa16.92■□□□□ 0.3
CCDC28A-203ENST00000617445 ZNF814B7Z6K7 855 aa16.92■□□□□ 0.3
CCDC28A-203ENST00000617445 FAAHO00519 579 aa16.92■□□□□ 0.3
CCDC28A-203ENST00000617445 DBIP07108 87 aaKnown RBP16.92■□□□□ 0.3
CCDC28A-203ENST00000617445 ZCCHC18P0CG32 403 aa16.92■□□□□ 0.3
CCDC28A-203ENST00000617445 NR2F1P10589 423 aa16.92■□□□□ 0.3
CCDC28A-203ENST00000617445 TFPIP10646 304 aa16.92■□□□□ 0.3
CCDC28A-203ENST00000617445 UQCRBP14927 111 aa16.92■□□□□ 0.3
CCDC28A-203ENST00000617445 PAX1P15863 534 aa16.92■□□□□ 0.3
CCDC28A-203ENST00000617445 IL7RP16871 459 aa16.92■□□□□ 0.3
CCDC28A-203ENST00000617445 RYKP34925 604 aa16.92■□□□□ 0.3
CCDC28A-203ENST00000617445 SYPL1Q16563 259 aa16.92■□□□□ 0.3
CCDC28A-203ENST00000617445 Q5PR19 223 aa16.92■□□□□ 0.3
CCDC28A-203ENST00000617445 BEND6Q5SZJ8 279 aaPredicted RBP16.92■□□□□ 0.3
CCDC28A-203ENST00000617445 ADAM5Q6NVV9 412 aa16.92■□□□□ 0.3
CCDC28A-203ENST00000617445 PEX5LQ8IYB4 626 aa16.92■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms