RNA–Protein interactions for RNA: ENST00000593764.5

SHKBP1-202, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 870 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-202ENST00000593764 FAM27E3Q08E93 113 aa16.54■□□□□ 0.24
SHKBP1-202ENST00000593764 C6orf10Q5SRN2 563 aa16.54■□□□□ 0.24
SHKBP1-202ENST00000593764 PDSS1Q5T2R2 415 aa16.54■□□□□ 0.24
SHKBP1-202ENST00000593764 PPP4R4Q6NUP7 873 aa16.54■□□□□ 0.24
SHKBP1-202ENST00000593764 ZNF610Q8N9Z0 462 aa16.54■□□□□ 0.24
SHKBP1-202ENST00000593764 ATP6V1C2Q8NEY4 427 aa16.54■□□□□ 0.24
SHKBP1-202ENST00000593764 STON2Q8WXE9 905 aa16.54■□□□□ 0.24
SHKBP1-202ENST00000593764 CNOT9Q92600 299 aaKnown RBP16.54■□□□□ 0.24
SHKBP1-202ENST00000593764 PMM1Q92871 262 aa16.54■□□□□ 0.24
SHKBP1-202ENST00000593764 GMPPAQ96IJ6 420 aaPredicted RBP16.54■□□□□ 0.24
SHKBP1-202ENST00000593764 COQ10BQ9H8M1 238 aa16.54■□□□□ 0.24
SHKBP1-202ENST00000593764 EXOSC3Q9NQT5 275 aaKnown RBP16.54■□□□□ 0.24
SHKBP1-202ENST00000593764 ACER3Q9NUN7 267 aa16.54■□□□□ 0.24
SHKBP1-202ENST00000593764 MCTS1Q9ULC4 181 aaKnown RBP16.54■□□□□ 0.24
SHKBP1-202ENST00000593764 CLEC4AQ9UMR7 237 aa16.54■□□□□ 0.24
SHKBP1-202ENST00000593764 A6NNC1 897 aa16.53■□□□□ 0.24
SHKBP1-202ENST00000593764 EDF1O60869 148 aaKnown RBP16.53■□□□□ 0.24
SHKBP1-202ENST00000593764 SS18L1O75177 396 aaPredicted RBP16.53■□□□□ 0.24
SHKBP1-202ENST00000593764 SYNGR4O95473 234 aa16.53■□□□□ 0.24
SHKBP1-202ENST00000593764 TFPTP0C1Z6 253 aa16.53■□□□□ 0.24
SHKBP1-202ENST00000593764 CRATP43155 626 aa16.53■□□□□ 0.24
SHKBP1-202ENST00000593764 ATP4BP51164 291 aa16.53■□□□□ 0.24
SHKBP1-202ENST00000593764 SELENBP1Q13228 472 aa16.53■□□□□ 0.24
SHKBP1-202ENST00000593764 ZNF239Q16600 458 aaKnown RBP16.53■□□□□ 0.24
SHKBP1-202ENST00000593764 PLEKHM3Q6ZWE6 761 aa16.53■□□□□ 0.24
SHKBP1-202ENST00000593764 TMEM200AQ86VY9 491 aa16.53■□□□□ 0.24
SHKBP1-202ENST00000593764 SLC38A5Q8WUX1 472 aa16.53■□□□□ 0.24
SHKBP1-202ENST00000593764 ROBO4Q8WZ75 1007 aa16.53■□□□□ 0.24
SHKBP1-202ENST00000593764 THOC1Q96FV9 657 aaKnown RBP16.53■□□□□ 0.24
SHKBP1-202ENST00000593764 GPATCH1Q9BRR8 931 aaKnown RBP16.53■□□□□ 0.24
SHKBP1-202ENST00000593764 PLSCR4Q9NRQ2 329 aa16.53■□□□□ 0.24
SHKBP1-202ENST00000593764 RASSF1Q9NS23 344 aa16.53■□□□□ 0.24
SHKBP1-202ENST00000593764 SLC25A37Q9NYZ2 338 aa16.53■□□□□ 0.24
SHKBP1-202ENST00000593764 CCDC167Q9P0B6 97 aa16.53■□□□□ 0.24
SHKBP1-202ENST00000593764 SLAMF8Q9P0V8 285 aa16.53■□□□□ 0.24
SHKBP1-202ENST00000593764 ANKRD17O75179 2603 aaKnown RBP16.53■□□□□ 0.24
SHKBP1-202ENST00000593764 DSPPQ9NZW4 1301 aa16.52■□□□□ 0.24
SHKBP1-202ENST00000593764 A0A096LPI6 279 aa16.52■□□□□ 0.24
SHKBP1-202ENST00000593764 A0A1W2PNR3 127 aa16.52■□□□□ 0.24
SHKBP1-202ENST00000593764 GJE1A6NN92 205 aa16.52■□□□□ 0.24
SHKBP1-202ENST00000593764 RYKP34925 604 aa16.52■□□□□ 0.24
SHKBP1-202ENST00000593764 DSTNP60981 165 aa16.52■□□□□ 0.24
SHKBP1-202ENST00000593764 RGNQ15493 299 aa16.52■□□□□ 0.24
SHKBP1-202ENST00000593764 PAGE3Q5JUK9 113 aa16.52■□□□□ 0.24
SHKBP1-202ENST00000593764 MSRB3Q8IXL7 192 aa16.52■□□□□ 0.24
SHKBP1-202ENST00000593764 CMIPQ8IY22 773 aa16.52■□□□□ 0.24
SHKBP1-202ENST00000593764 ARFGAP2Q8N6H7 521 aa16.52■□□□□ 0.24
SHKBP1-202ENST00000593764 TMEM234Q8WY98 164 aa16.52■□□□□ 0.24
SHKBP1-202ENST00000593764 CPNE4Q96A23 557 aaPredicted RBP16.52■□□□□ 0.24
SHKBP1-202ENST00000593764 SPDL1Q96EA4 605 aa16.52■□□□□ 0.24
SHKBP1-202ENST00000593764 CCDC106Q9BWC9 280 aa16.52■□□□□ 0.24
SHKBP1-202ENST00000593764 TIGARQ9NQ88 270 aa16.52■□□□□ 0.24
SHKBP1-202ENST00000593764 GLRX2Q9NS18 164 aa16.52■□□□□ 0.24
SHKBP1-202ENST00000593764 TMEM45AQ9NWC5 275 aa16.52■□□□□ 0.24
SHKBP1-202ENST00000593764 DNAJB12Q9NXW2 375 aaKnown RBP16.52■□□□□ 0.24
SHKBP1-202ENST00000593764 P2RX2Q9UBL9 471 aa16.52■□□□□ 0.24
SHKBP1-202ENST00000593764 CLIC1O00299 241 aa16.51■□□□□ 0.23
SHKBP1-202ENST00000593764 NR5A2O00482 541 aa16.51■□□□□ 0.23
SHKBP1-202ENST00000593764 NUDT7P0C024 238 aa16.51■□□□□ 0.23
SHKBP1-202ENST00000593764 CPOXP36551 454 aa16.51■□□□□ 0.23
SHKBP1-202ENST00000593764 CD79BP40259 229 aa16.51■□□□□ 0.23
SHKBP1-202ENST00000593764 IRX1P78414 480 aaPredicted RBP16.51■□□□□ 0.23
SHKBP1-202ENST00000593764 MERTKQ12866 999 aa16.51■□□□□ 0.23
SHKBP1-202ENST00000593764 AGKQ53H12 422 aa16.51■□□□□ 0.23
SHKBP1-202ENST00000593764 LRIF1Q5T3J3 769 aa16.51■□□□□ 0.23
SHKBP1-202ENST00000593764 C3orf33Q6P1S2 294 aa16.51■□□□□ 0.23
SHKBP1-202ENST00000593764 OR6K3Q8NGY3 331 aa16.51■□□□□ 0.23
SHKBP1-202ENST00000593764 RNF128Q8TEB7 428 aa16.51■□□□□ 0.23
SHKBP1-202ENST00000593764 ABHD3Q8WU67 409 aa16.51■□□□□ 0.23
SHKBP1-202ENST00000593764 NRGNQ92686 78 aa16.51■□□□□ 0.23
SHKBP1-202ENST00000593764 DACH2Q96NX9 599 aa16.51■□□□□ 0.23
SHKBP1-202ENST00000593764 ZNF385DQ9H6B1 395 aa16.51■□□□□ 0.23
SHKBP1-202ENST00000593764 DCTN4Q9UJW0 460 aa16.51■□□□□ 0.23
SHKBP1-202ENST00000593764 PROCRQ9UNN8 238 aa16.51■□□□□ 0.23
SHKBP1-202ENST00000593764 EMC9Q9Y3B6 208 aa16.51■□□□□ 0.23
SHKBP1-202ENST00000593764 CELSR1Q9NYQ6 3014 aa16.5■□□□□ 0.23
SHKBP1-202ENST00000593764 ENO4A6NNW6 628 aa16.5■□□□□ 0.23
SHKBP1-202ENST00000593764 AP3D1O14617 1153 aa16.5■□□□□ 0.23
SHKBP1-202ENST00000593764 PLGP00747 810 aaPredicted RBP16.5■□□□□ 0.23
SHKBP1-202ENST00000593764 BCHEP06276 602 aa16.5■□□□□ 0.23
SHKBP1-202ENST00000593764 DBIP07108 87 aaKnown RBP16.5■□□□□ 0.23
SHKBP1-202ENST00000593764 BMP2P12643 396 aa16.5■□□□□ 0.23
SHKBP1-202ENST00000593764 IL7RP16871 459 aa16.5■□□□□ 0.23
SHKBP1-202ENST00000593764 ENPP1P22413 925 aa16.5■□□□□ 0.23
SHKBP1-202ENST00000593764 APOBEC1P41238 236 aaKnown RBP16.5■□□□□ 0.23
SHKBP1-202ENST00000593764 CTBP2P56545 445 aa16.5■□□□□ 0.23
SHKBP1-202ENST00000593764 RAC3P60763 192 aa16.5■□□□□ 0.23
SHKBP1-202ENST00000593764 SQLEQ14534 574 aa16.5■□□□□ 0.23
SHKBP1-202ENST00000593764 MRPL2Q5T653 305 aaKnown RBP16.5■□□□□ 0.23
SHKBP1-202ENST00000593764 GTF2IRD2BQ6EKJ0 949 aa16.5■□□□□ 0.23
SHKBP1-202ENST00000593764 CDH24Q86UP0 819 aa16.5■□□□□ 0.23
SHKBP1-202ENST00000593764 GTF2IRD2Q86UP8 949 aa16.5■□□□□ 0.23
SHKBP1-202ENST00000593764 VRK2Q86Y07 508 aa16.5■□□□□ 0.23
SHKBP1-202ENST00000593764 ADGRG3Q86Y34 549 aa16.5■□□□□ 0.23
SHKBP1-202ENST00000593764 PEX5LQ8IYB4 626 aa16.5■□□□□ 0.23
SHKBP1-202ENST00000593764 ZNF563Q8TA94 476 aa16.5■□□□□ 0.23
SHKBP1-202ENST00000593764 WDR60Q8WVS4 1066 aa16.5■□□□□ 0.23
SHKBP1-202ENST00000593764 TMEM19Q96HH6 336 aa16.5■□□□□ 0.23
SHKBP1-202ENST00000593764 POLDIP3Q9BY77 421 aaKnown RBP16.5■□□□□ 0.23
SHKBP1-202ENST00000593764 NPHS2Q9NP85 383 aa16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 72.3 ms