RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 GALEQ14376 348 aa4.98□□□□□ -1.61
SYNE1-220ENST00000471834 TEX30Q5JUR7 227 aa4.98□□□□□ -1.61
SYNE1-220ENST00000471834 LY6G6FQ5SQ64 297 aa4.98□□□□□ -1.61
SYNE1-220ENST00000471834 GSG1LQ6UXU4 331 aa4.98□□□□□ -1.61
SYNE1-220ENST00000471834 ZNF852Q6ZMS4 543 aa4.98□□□□□ -1.61
SYNE1-220ENST00000471834 DNAJC5GQ8N7S2 189 aa4.98□□□□□ -1.61
SYNE1-220ENST00000471834 NLGN2Q8NFZ4 835 aa4.98□□□□□ -1.61
SYNE1-220ENST00000471834 OR52J3Q8NH60 311 aa4.98□□□□□ -1.61
SYNE1-220ENST00000471834 CLP1Q92989 425 aaKnown RBP4.98□□□□□ -1.61
SYNE1-220ENST00000471834 NKD1Q969G9 470 aa4.98□□□□□ -1.61
SYNE1-220ENST00000471834 APOLD1Q96LR9 279 aa4.98□□□□□ -1.61
SYNE1-220ENST00000471834 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP4.98□□□□□ -1.61
SYNE1-220ENST00000471834 TAS2R16Q9NYV7 291 aa4.98□□□□□ -1.61
SYNE1-220ENST00000471834 STOX2Q9P2F5 926 aaPredicted RBP4.98□□□□□ -1.61
SYNE1-220ENST00000471834 MGAT4AQ9UM21 535 aa4.98□□□□□ -1.61
SYNE1-220ENST00000471834 A0A0A6YYH2 397 aa4.98□□□□□ -1.61
SYNE1-220ENST00000471834 A6NJ64 397 aa4.98□□□□□ -1.61
SYNE1-220ENST00000471834 DBX1A6NMT0 343 aa4.98□□□□□ -1.61
SYNE1-220ENST00000471834 MCIDASD6RGH6 385 aa4.98□□□□□ -1.61
SYNE1-220ENST00000471834 CXCL3P19876 107 aa4.98□□□□□ -1.61
SYNE1-220ENST00000471834 C4BPBP20851 252 aa4.98□□□□□ -1.61
SYNE1-220ENST00000471834 AGAP20933 346 aa4.98□□□□□ -1.61
SYNE1-220ENST00000471834 F8A1P23610 371 aa4.98□□□□□ -1.61
SYNE1-220ENST00000471834 MANFP55145 182 aaKnown RBP4.98□□□□□ -1.61
SYNE1-220ENST00000471834 DSTNP60981 165 aa4.98□□□□□ -1.61
SYNE1-220ENST00000471834 KCNA10Q16322 511 aa4.98□□□□□ -1.61
SYNE1-220ENST00000471834 DECR1Q16698 335 aa4.98□□□□□ -1.61
SYNE1-220ENST00000471834 EEF1AKMT2Q5JPI9 291 aaKnown RBP4.98□□□□□ -1.61
SYNE1-220ENST00000471834 RBMS3Q6XE24 437 aaKnown RBP4.98□□□□□ -1.61
SYNE1-220ENST00000471834 AMIGO1Q86WK6 493 aa4.98□□□□□ -1.61
SYNE1-220ENST00000471834 OR51Q1Q8NH59 317 aa4.98□□□□□ -1.61
SYNE1-220ENST00000471834 SNIP1Q8TAD8 396 aaKnown RBP4.98□□□□□ -1.61
SYNE1-220ENST00000471834 GFI1Q99684 422 aa4.98□□□□□ -1.61
SYNE1-220ENST00000471834 CFHR5Q9BXR6 569 aa4.98□□□□□ -1.61
SYNE1-220ENST00000471834 SEC14L3Q9UDX4 400 aa4.98□□□□□ -1.61
SYNE1-220ENST00000471834 PCDHB10Q9UN67 800 aa4.98□□□□□ -1.61
SYNE1-220ENST00000471834 ANKRD20A5PA0PJZ0 165 aa4.98□□□□□ -1.61
SYNE1-220ENST00000471834 MEX3AA1L020 520 aaKnown RBP4.98□□□□□ -1.61
SYNE1-220ENST00000471834 MEN1O00255 615 aa4.98□□□□□ -1.61
SYNE1-220ENST00000471834 DUSP11O75319 330 aaKnown RBP4.98□□□□□ -1.61
SYNE1-220ENST00000471834 ZIC2O95409 532 aaPredicted RBP4.98□□□□□ -1.61
SYNE1-220ENST00000471834 PSKH1P11801 424 aa4.98□□□□□ -1.61
SYNE1-220ENST00000471834 SELPP16109 830 aa4.98□□□□□ -1.61
SYNE1-220ENST00000471834 RPS25P62851 125 aaKnown RBP4.98□□□□□ -1.61
SYNE1-220ENST00000471834 BIKQ13323 160 aa4.98□□□□□ -1.61
SYNE1-220ENST00000471834 LRFN4Q6PJG9 635 aa4.98□□□□□ -1.61
SYNE1-220ENST00000471834 PAQR6Q6TCH4 344 aa4.98□□□□□ -1.61
SYNE1-220ENST00000471834 CRTC1Q6UUV9 634 aa4.98□□□□□ -1.61
SYNE1-220ENST00000471834 CLRN3Q8NCR9 226 aa4.98□□□□□ -1.61
SYNE1-220ENST00000471834 OR10Q1Q8NGQ4 319 aa4.98□□□□□ -1.61
SYNE1-220ENST00000471834 ST8SIA4Q92187 359 aa4.98□□□□□ -1.61
SYNE1-220ENST00000471834 BOCQ9BWV1 1114 aa4.98□□□□□ -1.61
SYNE1-220ENST00000471834 DZANK1Q9NVP4 752 aa4.98□□□□□ -1.61
SYNE1-220ENST00000471834 MARCH5Q9NX47 278 aa4.98□□□□□ -1.61
SYNE1-220ENST00000471834 ISM1B1AKI9 464 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 BHLHE40O14503 412 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 NDUFS6O75380 124 aaKnown RBP4.97□□□□□ -1.61
SYNE1-220ENST00000471834 CLEC3AO75596 197 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 ELK1P19419 428 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 DPTQ07507 201 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 NAE1Q13564 534 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 PAMR1Q6UXH9 720 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 SLC9B2Q86UD5 537 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 RTN4RL1Q86UN2 441 aaPredicted RBP4.97□□□□□ -1.61
SYNE1-220ENST00000471834 TCEAL8Q8IYN2 117 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 SLC30A7Q8NEW0 376 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 OR6M1Q8NGM8 313 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 YPEL4Q96NS1 127 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 CDK15Q96Q40 435 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 AMBNQ9NP70 447 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 GSTK1Q9Y2Q3 226 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 TRBV5-7A0A0A0MS05 114 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 HMGN4O00479 90 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 YKT6O15498 198 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 DHFRP00374 187 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 CCT3P49368 545 aaKnown RBP4.97□□□□□ -1.61
SYNE1-220ENST00000471834 TAS2R43P59537 309 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 DUSP4Q13115 394 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 ZNHIT3Q15649 155 aaPredicted RBP4.97□□□□□ -1.61
SYNE1-220ENST00000471834 TCEAL5Q5H9L2 206 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 GCNT6Q5T4J0 391 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 CPTPQ5TA50 214 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 FAHD2BQ6P2I3 314 aaPredicted RBP4.97□□□□□ -1.61
SYNE1-220ENST00000471834 RTL4Q6ZR62 310 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 ZNF527Q8NB42 609 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 OR9A4Q8NGU2 314 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 FAHD2AQ96GK7 314 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 PTPN18Q99952 460 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 ARV1Q9H2C2 271 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 SLC38A1Q9H2H9 487 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 CXorf36Q9H7Y0 433 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 PELI2Q9HAT8 420 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 FBXW2Q9UKT8 454 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 SMAD9O15198 467 aaKnown RBP4.97□□□□□ -1.61
SYNE1-220ENST00000471834 ATP1B1P05026 303 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 PRKAR1AP10644 381 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 SLC2A2P11168 524 aaPredicted RBP4.97□□□□□ -1.61
SYNE1-220ENST00000471834 CYBAP13498 195 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 ATF1P18846 271 aa4.97□□□□□ -1.61
SYNE1-220ENST00000471834 NT5EP21589 574 aa4.97□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 88.5 ms