RNA–Protein interactions for RNA: ENST00000417040.1

UBR4-205, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 5

Gene UBR4, Length 6,175 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-205ENST00000417040 RRNAD1Q96FB5 475 aaKnown RBP11.32□□□□□ -0.6
UBR4-205ENST00000417040 PARP4Q9UKK3 1724 aaKnown RBP11.32□□□□□ -0.6
UBR4-205ENST00000417040 CLDN24A6NM45 220 aa11.32□□□□□ -0.6
UBR4-205ENST00000417040 SULT1C2O00338 296 aa11.32□□□□□ -0.6
UBR4-205ENST00000417040 OR7A17O14581 309 aa11.32□□□□□ -0.6
UBR4-205ENST00000417040 CD53P19397 219 aa11.32□□□□□ -0.6
UBR4-205ENST00000417040 RTP2Q5QGT7 225 aa11.32□□□□□ -0.6
UBR4-205ENST00000417040 USP53Q70EK8 1073 aa11.32□□□□□ -0.6
UBR4-205ENST00000417040 CPT1CQ8TCG5 803 aa11.32□□□□□ -0.6
UBR4-205ENST00000417040 GAS2L1Q99501 681 aaPredicted RBP11.32□□□□□ -0.6
UBR4-205ENST00000417040 GON7Q9BXV9 100 aa11.32□□□□□ -0.6
UBR4-205ENST00000417040 ATG4BQ9Y4P1 393 aa11.32□□□□□ -0.6
UBR4-205ENST00000417040 CACNA1FO60840 1977 aa11.32□□□□□ -0.6
UBR4-205ENST00000417040 SRPX2O60687 465 aaPredicted RBP11.32□□□□□ -0.6
UBR4-205ENST00000417040 NDUFB2O95178 105 aa11.32□□□□□ -0.6
UBR4-205ENST00000417040 UBBP0CG47 229 aa11.32□□□□□ -0.6
UBR4-205ENST00000417040 UBCP0CG48 685 aaKnown RBP11.32□□□□□ -0.6
UBR4-205ENST00000417040 SMIM18P0DKX4 95 aa11.32□□□□□ -0.6
UBR4-205ENST00000417040 RAB3AP20336 220 aa11.32□□□□□ -0.6
UBR4-205ENST00000417040 DDCP20711 480 aa11.32□□□□□ -0.6
UBR4-205ENST00000417040 NME2P22392 152 aa11.32□□□□□ -0.6
UBR4-205ENST00000417040 APEX1P27695 318 aaKnown RBP11.32□□□□□ -0.6
UBR4-205ENST00000417040 RPS5P46782 204 aaKnown RBP11.32□□□□□ -0.6
UBR4-205ENST00000417040 INHBCP55103 352 aa11.32□□□□□ -0.6
UBR4-205ENST00000417040 RPS27AP62979 156 aaKnown RBP11.32□□□□□ -0.6
UBR4-205ENST00000417040 UBA52P62987 128 aaKnown RBP11.32□□□□□ -0.6
UBR4-205ENST00000417040 TNK1Q13470 666 aa11.32□□□□□ -0.6
UBR4-205ENST00000417040 FCN2Q15485 313 aa11.32□□□□□ -0.6
UBR4-205ENST00000417040 FOXB2Q5VYV0 432 aa11.32□□□□□ -0.6
UBR4-205ENST00000417040 CBLL1Q75N03 491 aa11.32□□□□□ -0.6
UBR4-205ENST00000417040 TRAPPC6BQ86SZ2 158 aa11.32□□□□□ -0.6
UBR4-205ENST00000417040 C2CD4CQ8TF44 421 aa11.32□□□□□ -0.6
UBR4-205ENST00000417040 GLTPD2A6NH11 291 aa11.32□□□□□ -0.6
UBR4-205ENST00000417040 SOCS7O14512 581 aa11.32□□□□□ -0.6
UBR4-205ENST00000417040 STK17BO94768 372 aa11.32□□□□□ -0.6
UBR4-205ENST00000417040 JMJD7P0C870 316 aa11.32□□□□□ -0.6
UBR4-205ENST00000417040 GSTM4Q03013 218 aa11.32□□□□□ -0.6
UBR4-205ENST00000417040 ELOAQ14241 798 aaKnown RBP11.32□□□□□ -0.6
UBR4-205ENST00000417040 GBX1Q14549 363 aa11.32□□□□□ -0.6
UBR4-205ENST00000417040 MAMDC2Q7Z304 686 aaPredicted RBP11.32□□□□□ -0.6
UBR4-205ENST00000417040 RETREG3Q86VR2 466 aa11.32□□□□□ -0.6
UBR4-205ENST00000417040 TMEM25Q86YD3 366 aa11.32□□□□□ -0.6
UBR4-205ENST00000417040 LYSMD2Q8IV50 215 aa11.32□□□□□ -0.6
UBR4-205ENST00000417040 DDIT4LQ96D03 193 aa11.32□□□□□ -0.6
UBR4-205ENST00000417040 TSPAN10Q9H1Z9 355 aaPredicted RBP11.32□□□□□ -0.6
UBR4-205ENST00000417040 BACE2Q9Y5Z0 518 aa11.32□□□□□ -0.6
UBR4-205ENST00000417040 PRAF2O60831 178 aa11.31□□□□□ -0.6
UBR4-205ENST00000417040 ACP2P11117 423 aa11.31□□□□□ -0.6
UBR4-205ENST00000417040 SHC1P29353 583 aa11.31□□□□□ -0.6
UBR4-205ENST00000417040 HOXA11P31270 313 aaPredicted RBP11.31□□□□□ -0.6
UBR4-205ENST00000417040 CD79BP40259 229 aa11.31□□□□□ -0.6
UBR4-205ENST00000417040 VEGFCP49767 419 aa11.31□□□□□ -0.6
UBR4-205ENST00000417040 CLDN6P56747 220 aa11.31□□□□□ -0.6
UBR4-205ENST00000417040 MLLT11Q13015 90 aaPredicted RBP11.31□□□□□ -0.6
UBR4-205ENST00000417040 EBPQ15125 230 aaKnown RBP11.31□□□□□ -0.6
UBR4-205ENST00000417040 BCL2A1Q16548 175 aa11.31□□□□□ -0.6
UBR4-205ENST00000417040 PM20D1Q6GTS8 502 aa11.31□□□□□ -0.6
UBR4-205ENST00000417040 LRRC28Q86X40 367 aaPredicted RBP11.31□□□□□ -0.6
UBR4-205ENST00000417040 SLC2A12Q8TD20 617 aa11.31□□□□□ -0.6
UBR4-205ENST00000417040 C3orf49Q96BT1 292 aa11.31□□□□□ -0.6
UBR4-205ENST00000417040 RBM24Q9BX46 236 aaKnown RBP11.31□□□□□ -0.6
UBR4-205ENST00000417040 MRPL22Q9NWU5 206 aaKnown RBP11.31□□□□□ -0.6
UBR4-205ENST00000417040 GPR34Q9UPC5 381 aa11.31□□□□□ -0.6
UBR4-205ENST00000417040 VDAC3Q9Y277 283 aa11.31□□□□□ -0.6
UBR4-205ENST00000417040 NAP1L6A6NFF2 107 aa11.31□□□□□ -0.6
UBR4-205ENST00000417040 MROH6A6NGR9 719 aa11.31□□□□□ -0.6
UBR4-205ENST00000417040 SMAD6O43541 496 aaKnown RBP11.31□□□□□ -0.6
UBR4-205ENST00000417040 MRPS14O60783 128 aaKnown RBP11.31□□□□□ -0.6
UBR4-205ENST00000417040 SYPP08247 313 aa11.31□□□□□ -0.6
UBR4-205ENST00000417040 GNB3P16520 340 aa11.31□□□□□ -0.6
UBR4-205ENST00000417040 MAGEB1P43366 347 aa11.31□□□□□ -0.6
UBR4-205ENST00000417040 TAS2R20P59543 309 aa11.31□□□□□ -0.6
UBR4-205ENST00000417040 EOGTQ5NDL2 527 aa11.31□□□□□ -0.6
UBR4-205ENST00000417040 FIGLAQ6QHK4 219 aa11.31□□□□□ -0.6
UBR4-205ENST00000417040 SHISA6Q6ZSJ9 500 aa11.31□□□□□ -0.6
UBR4-205ENST00000417040 SPRED1Q7Z699 444 aa11.31□□□□□ -0.6
UBR4-205ENST00000417040 KLHDC7BQ96G42 594 aa11.31□□□□□ -0.6
UBR4-205ENST00000417040 TEPSINQ96N21 525 aa11.31□□□□□ -0.6
UBR4-205ENST00000417040 CRB3Q9BUF7 120 aa11.31□□□□□ -0.6
UBR4-205ENST00000417040 TGIF2Q9GZN2 237 aa11.31□□□□□ -0.6
UBR4-205ENST00000417040 GCM1Q9NP62 436 aa11.31□□□□□ -0.6
UBR4-205ENST00000417040 QPCTLQ9NXS2 382 aa11.31□□□□□ -0.6
UBR4-205ENST00000417040 GLTPQ9NZD2 209 aa11.31□□□□□ -0.6
UBR4-205ENST00000417040 MYADML2A6NDP7 307 aa11.31□□□□□ -0.6
UBR4-205ENST00000417040 ACOD1A6NK06 481 aa11.31□□□□□ -0.6
UBR4-205ENST00000417040 VSTM2BA6NLU5 285 aa11.31□□□□□ -0.6
UBR4-205ENST00000417040 OR52A4PA6NMU1 304 aa11.31□□□□□ -0.6
UBR4-205ENST00000417040 VEGFDO43915 354 aa11.31□□□□□ -0.6
UBR4-205ENST00000417040 LILRB3O75022 631 aa11.31□□□□□ -0.6
UBR4-205ENST00000417040 SDC3O75056 442 aa11.31□□□□□ -0.6
UBR4-205ENST00000417040 IFNA10P01566 189 aa11.31□□□□□ -0.6
UBR4-205ENST00000417040 MAOBP27338 520 aa11.31□□□□□ -0.6
UBR4-205ENST00000417040 DHCR24Q15392 516 aa11.31□□□□□ -0.6
UBR4-205ENST00000417040 TMEM35AQ53FP2 167 aa11.31□□□□□ -0.6
UBR4-205ENST00000417040 TCTE1Q5JU00 501 aa11.31□□□□□ -0.6
UBR4-205ENST00000417040 HIST2H3PS2Q5TEC6 136 aa11.31□□□□□ -0.6
UBR4-205ENST00000417040 FBXW12Q6X9E4 464 aa11.31□□□□□ -0.6
UBR4-205ENST00000417040 COX15Q7KZN9 410 aa11.31□□□□□ -0.6
UBR4-205ENST00000417040 GLB1L2Q8IW92 636 aa11.31□□□□□ -0.6
UBR4-205ENST00000417040 DNAJC22Q8N4W6 341 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 69.3 ms