RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 H3BNH8 94 aa17.03■□□□□ 0.32
CLN3-206ENST00000360019 NDUFB5O43674 189 aa17.03■□□□□ 0.32
CLN3-206ENST00000360019 OR10H3O60404 316 aa17.03■□□□□ 0.32
CLN3-206ENST00000360019 ANGPTL1O95841 491 aa17.03■□□□□ 0.32
CLN3-206ENST00000360019 GASTP01350 101 aa17.03■□□□□ 0.32
CLN3-206ENST00000360019 ANXA8P13928 327 aa17.03■□□□□ 0.32
CLN3-206ENST00000360019 POLR2IP36954 125 aaKnown RBP17.03■□□□□ 0.32
CLN3-206ENST00000360019 SOX3P41225 446 aa17.03■□□□□ 0.32
CLN3-206ENST00000360019 ZNF117Q03924 483 aa17.03■□□□□ 0.32
CLN3-206ENST00000360019 CHAF1BQ13112 559 aa17.03■□□□□ 0.32
CLN3-206ENST00000360019 LSMEM1Q8N8F7 131 aa17.03■□□□□ 0.32
CLN3-206ENST00000360019 CYGBQ8WWM9 190 aa17.03■□□□□ 0.32
CLN3-206ENST00000360019 KIAA1143Q96AT1 154 aaPredicted RBP17.03■□□□□ 0.32
CLN3-206ENST00000360019 KLHDC3Q9BQ90 382 aa17.03■□□□□ 0.32
CLN3-206ENST00000360019 PRSS27Q9BQR3 290 aa17.03■□□□□ 0.32
CLN3-206ENST00000360019 CDCP1Q9H5V8 836 aa17.03■□□□□ 0.32
CLN3-206ENST00000360019 KRT84Q9NSB2 600 aa17.03■□□□□ 0.32
CLN3-206ENST00000360019 A0A0B4J2E0 115 aa17.03■□□□□ 0.32
CLN3-206ENST00000360019 A0A1B0GWA3 101 aa17.03■□□□□ 0.32
CLN3-206ENST00000360019 A0A1B0GX12 115 aa17.03■□□□□ 0.32
CLN3-206ENST00000360019 GTPBP1O00178 669 aaKnown RBP17.03■□□□□ 0.32
CLN3-206ENST00000360019 SCO2O43819 266 aa17.03■□□□□ 0.32
CLN3-206ENST00000360019 OR6B1O95007 311 aa17.03■□□□□ 0.32
CLN3-206ENST00000360019 SERPINA7P05543 415 aa17.03■□□□□ 0.32
CLN3-206ENST00000360019 GNAO1P09471 354 aa17.03■□□□□ 0.32
CLN3-206ENST00000360019 POU2F1P14859 743 aa17.03■□□□□ 0.32
CLN3-206ENST00000360019 ADARB1P78563 741 aaKnown RBP17.03■□□□□ 0.32
CLN3-206ENST00000360019 IL1RL1Q01638 556 aa17.03■□□□□ 0.32
CLN3-206ENST00000360019 KCNAB2Q13303 367 aa17.03■□□□□ 0.32
CLN3-206ENST00000360019 NTRK2Q16620 822 aa17.03■□□□□ 0.32
CLN3-206ENST00000360019 PGBD2Q6P3X8 592 aa17.03■□□□□ 0.32
CLN3-206ENST00000360019 ZNF613Q6PF04 617 aa17.03■□□□□ 0.32
CLN3-206ENST00000360019 WDR88Q6ZMY6 472 aa17.03■□□□□ 0.32
CLN3-206ENST00000360019 NUP54Q7Z3B4 507 aa17.03■□□□□ 0.32
CLN3-206ENST00000360019 RPS19BP1Q86WX3 136 aaKnown RBP17.03■□□□□ 0.32
CLN3-206ENST00000360019 CHERPQ8IWX8 916 aaKnown RBP17.03■□□□□ 0.32
CLN3-206ENST00000360019 ZNF440Q8IYI8 595 aa17.03■□□□□ 0.32
CLN3-206ENST00000360019 DHRSXQ8N5I4 330 aa17.03■□□□□ 0.32
CLN3-206ENST00000360019 OR10G3Q8NGC4 313 aa17.03■□□□□ 0.32
CLN3-206ENST00000360019 OR4K5Q8NGD3 323 aa17.03■□□□□ 0.32
CLN3-206ENST00000360019 TMEM255BQ8WV15 326 aa17.03■□□□□ 0.32
CLN3-206ENST00000360019 TTC9Q92623 222 aa17.03■□□□□ 0.32
CLN3-206ENST00000360019 SLC38A4Q969I6 547 aa17.03■□□□□ 0.32
CLN3-206ENST00000360019 TMCO6Q96DC7 493 aa17.03■□□□□ 0.32
CLN3-206ENST00000360019 SPACA9Q96E40 222 aaPredicted RBP17.03■□□□□ 0.32
CLN3-206ENST00000360019 TRIM2Q9C040 744 aa17.03■□□□□ 0.32
CLN3-206ENST00000360019 TMEM27Q9HBJ8 222 aa17.03■□□□□ 0.32
CLN3-206ENST00000360019 YARS2Q9Y2Z4 477 aaKnown RBP17.03■□□□□ 0.32
CLN3-206ENST00000360019 HCRTR2O43614 444 aa17.02■□□□□ 0.31
CLN3-206ENST00000360019 CAPGP40121 348 aa17.02■□□□□ 0.31
CLN3-206ENST00000360019 RAD23AP54725 363 aa17.02■□□□□ 0.31
CLN3-206ENST00000360019 MLF1P58340 268 aa17.02■□□□□ 0.31
CLN3-206ENST00000360019 MED21Q13503 144 aa17.02■□□□□ 0.31
CLN3-206ENST00000360019 RFX4Q33E94 735 aa17.02■□□□□ 0.31
CLN3-206ENST00000360019 ZNF791Q3KP31 576 aaPredicted RBP17.02■□□□□ 0.31
CLN3-206ENST00000360019 VASH2Q86V25 355 aa17.02■□□□□ 0.31
CLN3-206ENST00000360019 TMCO5AQ8N6Q1 288 aa17.02■□□□□ 0.31
CLN3-206ENST00000360019 GTPBP3Q969Y2 492 aaKnown RBP17.02■□□□□ 0.31
CLN3-206ENST00000360019 ZNF524Q96C55 264 aa17.02■□□□□ 0.31
CLN3-206ENST00000360019 SH3YL1Q96HL8 342 aaPredicted RBP17.02■□□□□ 0.31
CLN3-206ENST00000360019 ANKRD60Q9BZ19 345 aa17.02■□□□□ 0.31
CLN3-206ENST00000360019 LAT2Q9GZY6 243 aa17.02■□□□□ 0.31
CLN3-206ENST00000360019 Q9H521 79 aa17.02■□□□□ 0.31
CLN3-206ENST00000360019 ORC6Q9Y5N6 252 aa17.02■□□□□ 0.31
CLN3-206ENST00000360019 CLIC3O95833 236 aa17.01■□□□□ 0.31
CLN3-206ENST00000360019 CCR4P51679 360 aa17.01■□□□□ 0.31
CLN3-206ENST00000360019 SRSF6Q13247 344 aaKnown RBP17.01■□□□□ 0.31
CLN3-206ENST00000360019 BICRALQ6AI39 1079 aa17.01■□□□□ 0.31
CLN3-206ENST00000360019 H3F3CQ6NXT2 135 aa17.01■□□□□ 0.31
CLN3-206ENST00000360019 APLFQ8IW19 511 aaPredicted RBP17.01■□□□□ 0.31
CLN3-206ENST00000360019 CADM2Q8N3J6 435 aa17.01■□□□□ 0.31
CLN3-206ENST00000360019 MARVELD2Q8N4S9 558 aa17.01■□□□□ 0.31
CLN3-206ENST00000360019 BRIX1Q8TDN6 353 aaKnown RBP17.01■□□□□ 0.31
CLN3-206ENST00000360019 ACOT11Q8WXI4 607 aaPredicted RBP17.01■□□□□ 0.31
CLN3-206ENST00000360019 CNBD2Q96M20 576 aa17.01■□□□□ 0.31
CLN3-206ENST00000360019 FAM118AQ9NWS6 357 aa17.01■□□□□ 0.31
CLN3-206ENST00000360019 ICAM5Q9UMF0 924 aa17.01■□□□□ 0.31
CLN3-206ENST00000360019 PCDHGB5Q9Y5G0 923 aa17.01■□□□□ 0.31
CLN3-206ENST00000360019 TRABD2BA6NFA1 517 aa17■□□□□ 0.31
CLN3-206ENST00000360019 LINGO3P0C6S8 592 aa17■□□□□ 0.31
CLN3-206ENST00000360019 EPHA2P29317 976 aa17■□□□□ 0.31
CLN3-206ENST00000360019 GAS1P54826 345 aa17■□□□□ 0.31
CLN3-206ENST00000360019 DCAF10Q5QP82 559 aa17■□□□□ 0.31
CLN3-206ENST00000360019 B3GNTL1Q67FW5 361 aaPredicted RBP17■□□□□ 0.31
CLN3-206ENST00000360019 ZNF730Q6ZMV8 503 aa17■□□□□ 0.31
CLN3-206ENST00000360019 ZER1Q7Z7L7 766 aa17■□□□□ 0.31
CLN3-206ENST00000360019 SIRT6Q8N6T7 355 aa17■□□□□ 0.31
CLN3-206ENST00000360019 TOR1AIP2Q8NFQ8 470 aa17■□□□□ 0.31
CLN3-206ENST00000360019 PSMF1Q92530 271 aa17■□□□□ 0.31
CLN3-206ENST00000360019 RIBC2Q9H4K1 309 aa17■□□□□ 0.31
CLN3-206ENST00000360019 GALNT9Q9HCQ5 603 aa17■□□□□ 0.31
CLN3-206ENST00000360019 PAPOLBQ9NRJ5 636 aaKnown RBP17■□□□□ 0.31
CLN3-206ENST00000360019 WDR70Q9NW82 654 aa17■□□□□ 0.31
CLN3-206ENST00000360019 UBAP1Q9NZ09 502 aa17■□□□□ 0.31
CLN3-206ENST00000360019 KLK13Q9UKR3 277 aa17■□□□□ 0.31
CLN3-206ENST00000360019 MGAT4BQ9UQ53 548 aa17■□□□□ 0.31
CLN3-206ENST00000360019 H0YAE9 185 aa17■□□□□ 0.31
CLN3-206ENST00000360019 CHP2O43745 196 aa17■□□□□ 0.31
CLN3-206ENST00000360019 EIF4E2O60573 245 aaKnown RBP17■□□□□ 0.31
CLN3-206ENST00000360019 ADAP00813 363 aa17■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 111 ms