RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 PSMA8Q8TAA3 256 aa17.2■□□□□ 0.34
CCDC28A-203ENST00000617445 LINC01560Q8TB33 94 aa17.2■□□□□ 0.34
CCDC28A-203ENST00000617445 AGR3Q8TD06 166 aa17.2■□□□□ 0.34
CCDC28A-203ENST00000617445 ACTRT2Q8TDY3 377 aa17.2■□□□□ 0.34
CCDC28A-203ENST00000617445 OR5P2Q8WZ92 322 aa17.2■□□□□ 0.34
CCDC28A-203ENST00000617445 COQ8BQ96D53 544 aa17.2■□□□□ 0.34
CCDC28A-203ENST00000617445 FAM120BQ96EK7 910 aaKnown RBP17.2■□□□□ 0.34
CCDC28A-203ENST00000617445 BTBD2Q9BX70 525 aa17.2■□□□□ 0.34
CCDC28A-203ENST00000617445 CXXC4Q9H2H0 198 aa17.2■□□□□ 0.34
CCDC28A-203ENST00000617445 ZCCHC3Q9NUD5 404 aaKnown RBP17.2■□□□□ 0.34
CCDC28A-203ENST00000617445 PAQR5Q9NXK6 330 aaPredicted RBP17.2■□□□□ 0.34
CCDC28A-203ENST00000617445 NDRG3Q9UGV2 375 aa17.2■□□□□ 0.34
CCDC28A-203ENST00000617445 ZDHHC2Q9UIJ5 367 aa17.2■□□□□ 0.34
CCDC28A-203ENST00000617445 PRRC2AP48634 2157 aaKnown RBP17.19■□□□□ 0.34
CCDC28A-203ENST00000617445 A0A1W2PQD3 144 aa17.19■□□□□ 0.34
CCDC28A-203ENST00000617445 CTIFO43310 598 aaKnown RBP17.19■□□□□ 0.34
CCDC28A-203ENST00000617445 SNUPNO95149 360 aaKnown RBP17.19■□□□□ 0.34
CCDC28A-203ENST00000617445 FCGR2AP12318 317 aa17.19■□□□□ 0.34
CCDC28A-203ENST00000617445 ETV4P43268 484 aa17.19■□□□□ 0.34
CCDC28A-203ENST00000617445 SUCLG1P53597 346 aaKnown RBP17.19■□□□□ 0.34
CCDC28A-203ENST00000617445 CLDN15P56746 228 aa17.19■□□□□ 0.34
CCDC28A-203ENST00000617445 SMU1Q2TAY7 513 aa17.19■□□□□ 0.34
CCDC28A-203ENST00000617445 IL23RQ5VWK5 629 aa17.19■□□□□ 0.34
CCDC28A-203ENST00000617445 CAMKMTQ7Z624 323 aa17.19■□□□□ 0.34
CCDC28A-203ENST00000617445 NUDCD3Q8IVD9 361 aa17.19■□□□□ 0.34
CCDC28A-203ENST00000617445 METTL25Q8N6Q8 603 aa17.19■□□□□ 0.34
CCDC28A-203ENST00000617445 FNDC5Q8NAU1 212 aa17.19■□□□□ 0.34
CCDC28A-203ENST00000617445 OR7A2PQ8NGA2 310 aa17.19■□□□□ 0.34
CCDC28A-203ENST00000617445 OR56A1Q8NGH5 318 aa17.19■□□□□ 0.34
CCDC28A-203ENST00000617445 PPP1R14CQ8TAE6 165 aa17.19■□□□□ 0.34
CCDC28A-203ENST00000617445 NRGNQ92686 78 aa17.19■□□□□ 0.34
CCDC28A-203ENST00000617445 MOAP1Q96BY2 351 aa17.19■□□□□ 0.34
CCDC28A-203ENST00000617445 YIPF4Q9BSR8 244 aa17.19■□□□□ 0.34
CCDC28A-203ENST00000617445 PINK1Q9BXM7 581 aa17.19■□□□□ 0.34
CCDC28A-203ENST00000617445 PIGUQ9H490 435 aa17.19■□□□□ 0.34
CCDC28A-203ENST00000617445 SSU72Q9NP77 194 aaKnown RBP17.19■□□□□ 0.34
CCDC28A-203ENST00000617445 SIRT3Q9NTG7 399 aaPredicted RBP17.19■□□□□ 0.34
CCDC28A-203ENST00000617445 EIF3LQ9Y262 564 aaKnown RBP17.19■□□□□ 0.34
CCDC28A-203ENST00000617445 HRNRQ86YZ3 2850 aaPredicted RBP17.18■□□□□ 0.34
CCDC28A-203ENST00000617445 C7orf72A4D263 438 aa17.18■□□□□ 0.34
CCDC28A-203ENST00000617445 H3BML4 177 aa17.18■□□□□ 0.34
CCDC28A-203ENST00000617445 SCDO00767 359 aa17.18■□□□□ 0.34
CCDC28A-203ENST00000617445 CASKO14936 926 aa17.18■□□□□ 0.34
CCDC28A-203ENST00000617445 HMGN2P05204 90 aaKnown RBP17.18■□□□□ 0.34
CCDC28A-203ENST00000617445 LAMP1P11279 417 aa17.18■□□□□ 0.34
CCDC28A-203ENST00000617445 ARRB2P32121 409 aa17.18■□□□□ 0.34
CCDC28A-203ENST00000617445 CCT3P49368 545 aaKnown RBP17.18■□□□□ 0.34
CCDC28A-203ENST00000617445 POU6F2P78424 691 aaPredicted RBP17.18■□□□□ 0.34
CCDC28A-203ENST00000617445 CDC73Q6P1J9 531 aa17.18■□□□□ 0.34
CCDC28A-203ENST00000617445 FIGNL1Q6PIW4 674 aa17.18■□□□□ 0.34
CCDC28A-203ENST00000617445 PLXDC2Q6UX71 529 aa17.18■□□□□ 0.34
CCDC28A-203ENST00000617445 KIRREL3Q8IZU9 778 aa17.18■□□□□ 0.34
CCDC28A-203ENST00000617445 GTPBP8Q8N3Z3 284 aaPredicted RBP17.18■□□□□ 0.34
CCDC28A-203ENST00000617445 CHDHQ8NE62 594 aaPredicted RBP17.18■□□□□ 0.34
CCDC28A-203ENST00000617445 JADE3Q92613 823 aa17.18■□□□□ 0.34
CCDC28A-203ENST00000617445 ZBTB8AQ96BR9 441 aa17.18■□□□□ 0.34
CCDC28A-203ENST00000617445 TUBGCP3Q96CW5 907 aa17.18■□□□□ 0.34
CCDC28A-203ENST00000617445 STARD4Q96DR4 205 aa17.18■□□□□ 0.34
CCDC28A-203ENST00000617445 C16orf58Q96GQ5 468 aa17.18■□□□□ 0.34
CCDC28A-203ENST00000617445 C3orf30Q96M34 536 aa17.18■□□□□ 0.34
CCDC28A-203ENST00000617445 ACTRT3Q9BYD9 372 aa17.18■□□□□ 0.34
CCDC28A-203ENST00000617445 BHLHE41Q9C0J9 482 aaPredicted RBP17.18■□□□□ 0.34
CCDC28A-203ENST00000617445 HOXD1Q9GZZ0 328 aa17.18■□□□□ 0.34
CCDC28A-203ENST00000617445 RNF122Q9H9V4 155 aa17.18■□□□□ 0.34
CCDC28A-203ENST00000617445 NEUROD4Q9HD90 331 aa17.18■□□□□ 0.34
CCDC28A-203ENST00000617445 ELOVL5Q9NYP7 299 aa17.18■□□□□ 0.34
CCDC28A-203ENST00000617445 SNX8Q9Y5X2 465 aa17.18■□□□□ 0.34
CCDC28A-203ENST00000617445 SETD2Q9BYW2 2564 aaPredicted RBP17.18■□□□□ 0.34
CCDC28A-203ENST00000617445 SH3D21A4FU49 640 aa17.17■□□□□ 0.34
CCDC28A-203ENST00000617445 ESPNB1AK53 854 aa17.17■□□□□ 0.34
CCDC28A-203ENST00000617445 BIRC5O15392 142 aa17.17■□□□□ 0.34
CCDC28A-203ENST00000617445 RGS16O15492 202 aaPredicted RBP17.17■□□□□ 0.34
CCDC28A-203ENST00000617445 SEC14L5O43304 696 aa17.17■□□□□ 0.34
CCDC28A-203ENST00000617445 CREB1P16220 341 aa17.17■□□□□ 0.34
CCDC28A-203ENST00000617445 ZNF41P51814 821 aaPredicted RBP17.17■□□□□ 0.34
CCDC28A-203ENST00000617445 CLDN20P56880 219 aa17.17■□□□□ 0.34
CCDC28A-203ENST00000617445 RIPPLY3P57055 190 aa17.17■□□□□ 0.34
CCDC28A-203ENST00000617445 C21orf58P58505 322 aa17.17■□□□□ 0.34
CCDC28A-203ENST00000617445 EMX2Q04743 252 aa17.17■□□□□ 0.34
CCDC28A-203ENST00000617445 PTGR1Q14914 329 aa17.17■□□□□ 0.34
CCDC28A-203ENST00000617445 SGCBQ16585 318 aa17.17■□□□□ 0.34
CCDC28A-203ENST00000617445 KRT71Q3SY84 523 aa17.17■□□□□ 0.34
CCDC28A-203ENST00000617445 BHLHB9Q6PI77 547 aa17.17■□□□□ 0.34
CCDC28A-203ENST00000617445 MTERF4Q7Z6M4 381 aaKnown RBP17.17■□□□□ 0.34
CCDC28A-203ENST00000617445 WDR75Q8IWA0 830 aaKnown RBP17.17■□□□□ 0.34
CCDC28A-203ENST00000617445 RIMKLAQ8IXN7 391 aa17.17■□□□□ 0.34
CCDC28A-203ENST00000617445 CNEP1R1Q8N9A8 125 aa17.17■□□□□ 0.34
CCDC28A-203ENST00000617445 ZNF527Q8NB42 609 aa17.17■□□□□ 0.34
CCDC28A-203ENST00000617445 OR5M1Q8NGP8 315 aa17.17■□□□□ 0.34
CCDC28A-203ENST00000617445 SFXN5Q8TD22 340 aa17.17■□□□□ 0.34
CCDC28A-203ENST00000617445 SMPDL3BQ92485 455 aa17.17■□□□□ 0.34
CCDC28A-203ENST00000617445 MBD6Q96DN6 1003 aa17.17■□□□□ 0.34
CCDC28A-203ENST00000617445 SLC39A3Q9BRY0 314 aa17.17■□□□□ 0.34
CCDC28A-203ENST00000617445 CCM2LQ9NUG4 571 aaPredicted RBP17.17■□□□□ 0.34
CCDC28A-203ENST00000617445 ASIC5Q9NY37 505 aa17.17■□□□□ 0.34
CCDC28A-203ENST00000617445 GIMAP2Q9UG22 337 aa17.17■□□□□ 0.34
CCDC28A-203ENST00000617445 FAF1Q9UNN5 650 aaPredicted RBP17.17■□□□□ 0.34
CCDC28A-203ENST00000617445 EPB41L3Q9Y2J2 1087 aaPredicted RBP17.17■□□□□ 0.34
CCDC28A-203ENST00000617445 TM9SF1O15321 606 aa17.16■□□□□ 0.34
CCDC28A-203ENST00000617445 SKAP2O75563 359 aaPredicted RBP17.16■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 61.2 ms