RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 PROKR2Q8NFJ6 384 aa8.08□□□□□ -1.12
USP40-203ENST00000427112 OR5P2Q8WZ92 322 aa8.08□□□□□ -1.12
USP40-203ENST00000427112 TSACCQ96A04 125 aaPredicted RBP8.08□□□□□ -1.12
USP40-203ENST00000427112 RGMAQ96B86 450 aa8.08□□□□□ -1.12
USP40-203ENST00000427112 LMLNQ96KR4 655 aa8.08□□□□□ -1.12
USP40-203ENST00000427112 OR7D2Q96RA2 312 aa8.08□□□□□ -1.12
USP40-203ENST00000427112 MS4A8Q9BY19 250 aa8.08□□□□□ -1.12
USP40-203ENST00000427112 MED28Q9H204 178 aa8.08□□□□□ -1.12
USP40-203ENST00000427112 AUNIPQ9H7T9 357 aa8.08□□□□□ -1.12
USP40-203ENST00000427112 MOV10Q9HCE1 1003 aaKnown RBP8.08□□□□□ -1.12
USP40-203ENST00000427112 TMEM45AQ9NWC5 275 aa8.08□□□□□ -1.12
USP40-203ENST00000427112 MPDZO75970 2070 aa8.08□□□□□ -1.12
USP40-203ENST00000427112 PLXNA3P51805 1871 aa8.08□□□□□ -1.12
USP40-203ENST00000427112 A0A1B0GTH9 108 aa8.08□□□□□ -1.12
USP40-203ENST00000427112 FAM172BPA6NC97 362 aa8.08□□□□□ -1.12
USP40-203ENST00000427112 HMX3A6NHT5 357 aa8.08□□□□□ -1.12
USP40-203ENST00000427112 SLC16A5O15375 505 aa8.08□□□□□ -1.12
USP40-203ENST00000427112 ALPPP05187 535 aa8.08□□□□□ -1.12
USP40-203ENST00000427112 TFPIP10646 304 aa8.08□□□□□ -1.12
USP40-203ENST00000427112 ZNF30P17039 623 aa8.08□□□□□ -1.12
USP40-203ENST00000427112 CENPAP49450 140 aa8.08□□□□□ -1.12
USP40-203ENST00000427112 FAPQ12884 760 aa8.08□□□□□ -1.12
USP40-203ENST00000427112 IGSF11Q5DX21 431 aa8.08□□□□□ -1.12
USP40-203ENST00000427112 MTSS1LQ765P7 747 aa8.08□□□□□ -1.12
USP40-203ENST00000427112 BTN2A1Q7KYR7 527 aa8.08□□□□□ -1.12
USP40-203ENST00000427112 KANSL1Q7Z3B3 1105 aa8.08□□□□□ -1.12
USP40-203ENST00000427112 SDR9C7Q8NEX9 313 aa8.08□□□□□ -1.12
USP40-203ENST00000427112 NEURL3Q96EH8 262 aa8.08□□□□□ -1.12
USP40-203ENST00000427112 CPEB1Q9BZB8 566 aaKnown RBP8.08□□□□□ -1.12
USP40-203ENST00000427112 RNF32Q9H0A6 362 aa8.08□□□□□ -1.12
USP40-203ENST00000427112 TMEM38AQ9H6F2 299 aa8.08□□□□□ -1.12
USP40-203ENST00000427112 MRPS30Q9NP92 439 aaKnown RBP8.08□□□□□ -1.12
USP40-203ENST00000427112 DEC1Q9P2X7 70 aa8.08□□□□□ -1.12
USP40-203ENST00000427112 ING1Q9UK53 422 aaPredicted RBP8.08□□□□□ -1.12
USP40-203ENST00000427112 A0A075B6Q4 140 aa8.08□□□□□ -1.12
USP40-203ENST00000427112 LOC100509620A0A075B734 347 aa8.08□□□□□ -1.12
USP40-203ENST00000427112 TBC1D3DA0A087WVF3 549 aa8.08□□□□□ -1.12
USP40-203ENST00000427112 TBC1D3IA0A087WXS9 549 aa8.08□□□□□ -1.12
USP40-203ENST00000427112 TBC1D3EA0A087X179 549 aa8.08□□□□□ -1.12
USP40-203ENST00000427112 TBC1D3KA0A087X1G2 549 aa8.08□□□□□ -1.12
USP40-203ENST00000427112 A0A0A6YYJ9 748 aa8.08□□□□□ -1.12
USP40-203ENST00000427112 ABHD14A-ACY1A0A1B0GW23 586 aa8.08□□□□□ -1.12
USP40-203ENST00000427112 TBC1D3FA6NER0 549 aaPredicted RBP8.08□□□□□ -1.12
USP40-203ENST00000427112 TBC1D3LB9A6J9 549 aa8.08□□□□□ -1.12
USP40-203ENST00000427112 PRR23D1E9PI22 279 aaPredicted RBP8.08□□□□□ -1.12
USP40-203ENST00000427112 SIX6O95475 246 aa8.08□□□□□ -1.12
USP40-203ENST00000427112 PPP1R3DO95685 299 aa8.08□□□□□ -1.12
USP40-203ENST00000427112 PLATP00750 562 aa8.08□□□□□ -1.12
USP40-203ENST00000427112 ADRB1P08588 477 aa8.08□□□□□ -1.12
USP40-203ENST00000427112 TBC1D3HP0C7X1 549 aa8.08□□□□□ -1.12
USP40-203ENST00000427112 PRR23D2P0DMB1 279 aaPredicted RBP8.08□□□□□ -1.12
USP40-203ENST00000427112 PRPH2P23942 346 aa8.08□□□□□ -1.12
USP40-203ENST00000427112 MAPK9P45984 424 aa8.08□□□□□ -1.12
USP40-203ENST00000427112 KRR1Q13601 381 aaKnown RBP8.08□□□□□ -1.12
USP40-203ENST00000427112 GPR176Q14439 515 aa8.08□□□□□ -1.12
USP40-203ENST00000427112 SMAD2Q15796 467 aaKnown RBP8.08□□□□□ -1.12
USP40-203ENST00000427112 TBC1D3GQ6DHY5 549 aa8.08□□□□□ -1.12
USP40-203ENST00000427112 TBC1D3CQ6IPX1 549 aa8.08□□□□□ -1.12
USP40-203ENST00000427112 THSD4Q6ZMP0 1018 aa8.08□□□□□ -1.12
USP40-203ENST00000427112 RASSF6Q6ZTQ3 369 aa8.08□□□□□ -1.12
USP40-203ENST00000427112 PRSS58Q8IYP2 241 aa8.08□□□□□ -1.12
USP40-203ENST00000427112 TBC1D3Q8IZP1 549 aaPredicted RBP8.08□□□□□ -1.12
USP40-203ENST00000427112 HDDC3Q8N4P3 179 aa8.08□□□□□ -1.12
USP40-203ENST00000427112 EFHD2Q96C19 240 aaPredicted RBP8.08□□□□□ -1.12
USP40-203ENST00000427112 HHIPQ96QV1 700 aa8.08□□□□□ -1.12
USP40-203ENST00000427112 RAD9AQ99638 391 aa8.08□□□□□ -1.12
USP40-203ENST00000427112 OR10A4Q9H209 315 aa8.08□□□□□ -1.12
USP40-203ENST00000427112 CLEC4MQ9H2X3 399 aaPredicted RBP8.08□□□□□ -1.12
USP40-203ENST00000427112 OR6C2Q9NZP2 312 aa8.08□□□□□ -1.12
USP40-203ENST00000427112 STOML2Q9UJZ1 356 aa8.08□□□□□ -1.12
USP40-203ENST00000427112 FRYQ5TBA9 3013 aa8.08□□□□□ -1.12
USP40-203ENST00000427112 DENND4CQ5VZ89 1909 aa8.08□□□□□ -1.12
USP40-203ENST00000427112 UNC13CQ8NB66 2214 aa8.08□□□□□ -1.12
USP40-203ENST00000427112 IGKV1-8A0A0C4DH67 115 aa8.07□□□□□ -1.12
USP40-203ENST00000427112 ACOD1A6NK06 481 aa8.07□□□□□ -1.12
USP40-203ENST00000427112 H7C1C5 153 aa8.07□□□□□ -1.12
USP40-203ENST00000427112 UBXN7O94888 489 aa8.07□□□□□ -1.12
USP40-203ENST00000427112 CLTBP09497 229 aa8.07□□□□□ -1.12
USP40-203ENST00000427112 LIPCP11150 499 aa8.07□□□□□ -1.12
USP40-203ENST00000427112 NT5EP21589 574 aa8.07□□□□□ -1.12
USP40-203ENST00000427112 P2RY2P41231 377 aa8.07□□□□□ -1.12
USP40-203ENST00000427112 PGDP52209 483 aa8.07□□□□□ -1.12
USP40-203ENST00000427112 TAS2R38P59533 333 aa8.07□□□□□ -1.12
USP40-203ENST00000427112 LCN6P62502 163 aa8.07□□□□□ -1.12
USP40-203ENST00000427112 CSNK1G2P78368 415 aa8.07□□□□□ -1.12
USP40-203ENST00000427112 SLC7A9P82251 487 aa8.07□□□□□ -1.12
USP40-203ENST00000427112 MLLT11Q13015 90 aaPredicted RBP8.07□□□□□ -1.12
USP40-203ENST00000427112 DSG2Q14126 1118 aa8.07□□□□□ -1.12
USP40-203ENST00000427112 MAPK14Q16539 360 aa8.07□□□□□ -1.12
USP40-203ENST00000427112 ARHGAP15Q53QZ3 475 aa8.07□□□□□ -1.12
USP40-203ENST00000427112 SLC36A4Q6YBV0 504 aa8.07□□□□□ -1.12
USP40-203ENST00000427112 CXXC5Q7LFL8 322 aaKnown RBP8.07□□□□□ -1.12
USP40-203ENST00000427112 LRRC17Q8N6Y2 441 aa8.07□□□□□ -1.12
USP40-203ENST00000427112 DNAAF1Q8NEP3 725 aa8.07□□□□□ -1.12
USP40-203ENST00000427112 PIGXQ8TBF5 258 aa8.07□□□□□ -1.12
USP40-203ENST00000427112 ZNF431Q8TF32 576 aaPredicted RBP8.07□□□□□ -1.12
USP40-203ENST00000427112 OR8D1Q8WZ84 308 aa8.07□□□□□ -1.12
USP40-203ENST00000427112 ST8SIA2Q92186 375 aa8.07□□□□□ -1.12
USP40-203ENST00000427112 C4orf36Q96KX1 117 aa8.07□□□□□ -1.12
USP40-203ENST00000427112 TSSK2Q96PF2 358 aa8.07□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms