RNA–Protein interactions for RNA: ENST00000504761.6

TCOF1-207, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 4,467 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-207ENST00000504761 SLC4A8Q2Y0W8 1093 aa16.68■□□□□ 0.26
TCOF1-207ENST00000504761 SMARCC1Q92922 1105 aaPredicted RBP16.68■□□□□ 0.26
TCOF1-207ENST00000504761 MBD3O95983 291 aa16.68■□□□□ 0.26
TCOF1-207ENST00000504761 XBP1P17861 261 aa16.68■□□□□ 0.26
TCOF1-207ENST00000504761 GUCY1B3Q02153 619 aa16.68■□□□□ 0.26
TCOF1-207ENST00000504761 SETDB2Q96T68 719 aa16.68■□□□□ 0.26
TCOF1-207ENST00000504761 AXIN2Q9Y2T1 843 aa16.68■□□□□ 0.26
TCOF1-207ENST00000504761 HCLS1P14317 486 aaPredicted RBP16.68■□□□□ 0.26
TCOF1-207ENST00000504761 SETD1BQ9UPS6 1966 aaKnown RBP16.68■□□□□ 0.26
TCOF1-207ENST00000504761 ZSCAN29Q8IWY8 852 aaPredicted RBP16.67■□□□□ 0.26
TCOF1-207ENST00000504761 PLBD2Q8NHP8 589 aa16.67■□□□□ 0.26
TCOF1-207ENST00000504761 ERBB3P21860 1342 aa16.67■□□□□ 0.26
TCOF1-207ENST00000504761 ZNF213O14771 459 aa16.67■□□□□ 0.26
TCOF1-207ENST00000504761 GDPD2Q9HCC8 539 aa16.67■□□□□ 0.26
TCOF1-207ENST00000504761 LIMCH1Q9UPQ0 1083 aa16.67■□□□□ 0.26
TCOF1-207ENST00000504761 NASPP49321 788 aaPredicted RBP16.67■□□□□ 0.26
TCOF1-207ENST00000504761 CCDC152Q4G0S7 254 aa16.67■□□□□ 0.26
TCOF1-207ENST00000504761 NDUFB9Q9Y6M9 179 aa16.67■□□□□ 0.26
TCOF1-207ENST00000504761 LMTK2Q8IWU2 1503 aa16.67■□□□□ 0.26
TCOF1-207ENST00000504761 ME1P48163 572 aa16.66■□□□□ 0.26
TCOF1-207ENST00000504761 KRT85P78386 507 aa16.66■□□□□ 0.26
TCOF1-207ENST00000504761 ARID3AQ99856 593 aa16.66■□□□□ 0.26
TCOF1-207ENST00000504761 TRIM22Q8IYM9 498 aa16.66■□□□□ 0.26
TCOF1-207ENST00000504761 CCDC24Q8N4L8 307 aa16.66■□□□□ 0.26
TCOF1-207ENST00000504761 MPNDQ8N594 471 aa16.66■□□□□ 0.26
TCOF1-207ENST00000504761 ABCC4O15439 1325 aa16.66■□□□□ 0.26
TCOF1-207ENST00000504761 DZIP1Q86YF9 867 aaKnown RBP16.66■□□□□ 0.26
TCOF1-207ENST00000504761 GCKRQ14397 625 aa16.66■□□□□ 0.26
TCOF1-207ENST00000504761 TNPO1Q92973 898 aaKnown RBP16.66■□□□□ 0.26
TCOF1-207ENST00000504761 CTDP1Q9Y5B0 961 aaPredicted RBP16.66■□□□□ 0.26
TCOF1-207ENST00000504761 UTP14AQ9BVJ6 771 aaKnown RBP16.65■□□□□ 0.26
TCOF1-207ENST00000504761 TTLL7Q6ZT98 887 aa16.65■□□□□ 0.26
TCOF1-207ENST00000504761 BRINP3Q76B58 766 aa16.65■□□□□ 0.26
TCOF1-207ENST00000504761 NECAB1Q8N987 351 aa16.65■□□□□ 0.26
TCOF1-207ENST00000504761 BRMS1Q9HCU9 246 aa16.65■□□□□ 0.26
TCOF1-207ENST00000504761 RBM8AQ9Y5S9 174 aaKnown RBP16.65■□□□□ 0.26
TCOF1-207ENST00000504761 NMIQ13287 307 aaPredicted RBP16.64■□□□□ 0.26
TCOF1-207ENST00000504761 NLRP3Q96P20 1036 aa16.64■□□□□ 0.26
TCOF1-207ENST00000504761 KINO60870 393 aaKnown RBP16.64■□□□□ 0.25
TCOF1-207ENST00000504761 BRPF3Q9ULD4 1205 aa16.64■□□□□ 0.25
TCOF1-207ENST00000504761 WWC3Q9ULE0 1092 aa16.64■□□□□ 0.25
TCOF1-207ENST00000504761 GNPATO15228 680 aa16.64■□□□□ 0.25
TCOF1-207ENST00000504761 RANBP6O60518 1105 aaKnown RBP16.64■□□□□ 0.25
TCOF1-207ENST00000504761 ZNF853P0CG23 659 aa16.64■□□□□ 0.25
TCOF1-207ENST00000504761 USP5P45974 858 aa16.64■□□□□ 0.25
TCOF1-207ENST00000504761 ANKRD18AQ8IVF6 992 aa16.64■□□□□ 0.25
TCOF1-207ENST00000504761 CHMLP26374 656 aa16.64■□□□□ 0.25
TCOF1-207ENST00000504761 MRE11P49959 708 aa16.64■□□□□ 0.25
TCOF1-207ENST00000504761 TMX3Q96JJ7 454 aa16.63■□□□□ 0.25
TCOF1-207ENST00000504761 DBNDD2Q9BQY9 259 aa16.63■□□□□ 0.25
TCOF1-207ENST00000504761 ASAP1Q9ULH1 1129 aa16.63■□□□□ 0.25
TCOF1-207ENST00000504761 RTCBQ9Y3I0 505 aaKnown RBP16.63■□□□□ 0.25
TCOF1-207ENST00000504761 CCDC144CPQ8IYA2 1237 aa16.62■□□□□ 0.25
TCOF1-207ENST00000504761 SLC9C2Q5TAH2 1124 aa16.62■□□□□ 0.25
TCOF1-207ENST00000504761 SPATA32Q96LK8 384 aa16.62■□□□□ 0.25
TCOF1-207ENST00000504761 CAMSAP1Q5T5Y3 1602 aa16.62■□□□□ 0.25
TCOF1-207ENST00000504761 NEK1Q96PY6 1258 aa16.62■□□□□ 0.25
TCOF1-207ENST00000504761 JAG2Q9Y219 1238 aa16.62■□□□□ 0.25
TCOF1-207ENST00000504761 FAM182BQ5T319 152 aa16.62■□□□□ 0.25
TCOF1-207ENST00000504761 ZNF396Q96N95 335 aaPredicted RBP16.62■□□□□ 0.25
TCOF1-207ENST00000504761 CPA1P15085 419 aa16.61■□□□□ 0.25
TCOF1-207ENST00000504761 BRF1Q92994 677 aa16.61■□□□□ 0.25
TCOF1-207ENST00000504761 PAG1Q9NWQ8 432 aa16.61■□□□□ 0.25
TCOF1-207ENST00000504761 CLTCQ00610 1675 aaKnown RBP16.61■□□□□ 0.25
TCOF1-207ENST00000504761 RTL1A6NKG5 1358 aa16.61■□□□□ 0.25
TCOF1-207ENST00000504761 ZNF622Q969S3 477 aaKnown RBP eCLIP16.61■□□□□ 0.251e-6■■□□□ 12.8
TCOF1-207ENST00000504761 TULP4Q9NRJ4 1543 aa16.61■□□□□ 0.25
TCOF1-207ENST00000504761 DTNBO60941 627 aa16.6■□□□□ 0.25
TCOF1-207ENST00000504761 POLR3DP05423 398 aaPredicted RBP16.6■□□□□ 0.25
TCOF1-207ENST00000504761 NEURL1BA8MQ27 555 aa16.6■□□□□ 0.25
TCOF1-207ENST00000504761 MKNK2Q9HBH9 465 aa16.6■□□□□ 0.25
TCOF1-207ENST00000504761 TFIP11Q9UBB9 837 aaKnown RBP16.6■□□□□ 0.25
TCOF1-207ENST00000504761 ERVV-2B6SEH9 535 aa16.6■□□□□ 0.25
TCOF1-207ENST00000504761 IFIT3O14879 490 aaKnown RBP16.6■□□□□ 0.25
TCOF1-207ENST00000504761 CCDC191Q8NCU4 936 aa16.6■□□□□ 0.25
TCOF1-207ENST00000504761 USP21Q9UK80 565 aa16.6■□□□□ 0.25
TCOF1-207ENST00000504761 TTC41PQ6P2S7 1318 aa16.6■□□□□ 0.25
TCOF1-207ENST00000504761 BEND3Q5T5X7 828 aa16.59■□□□□ 0.25
TCOF1-207ENST00000504761 CHST3Q7LGC8 479 aa16.59■□□□□ 0.25
TCOF1-207ENST00000504761 SH2B1Q9NRF2 756 aaPredicted RBP16.59■□□□□ 0.25
TCOF1-207ENST00000504761 CCNL1Q9UK58 526 aaPredicted RBP16.59■□□□□ 0.25
TCOF1-207ENST00000504761 CDK12Q9NYV4 1490 aaPredicted RBP16.59■□□□□ 0.25
TCOF1-207ENST00000504761 A0A1B0GUL7 405 aa16.59■□□□□ 0.25
TCOF1-207ENST00000504761 GOLGA8BA8MQT2 603 aa16.59■□□□□ 0.25
TCOF1-207ENST00000504761 ITGA6P23229 1130 aa16.59■□□□□ 0.25
TCOF1-207ENST00000504761 MCMDC2Q4G0Z9 681 aa16.59■□□□□ 0.25
TCOF1-207ENST00000504761 EYA2O00167 538 aa16.59■□□□□ 0.25
TCOF1-207ENST00000504761 TTF1Q15361 905 aaPredicted RBP16.59■□□□□ 0.25
TCOF1-207ENST00000504761 TPTE2Q6XPS3 522 aa16.59■□□□□ 0.25
TCOF1-207ENST00000504761 EDC3Q96F86 508 aaKnown RBP16.59■□□□□ 0.25
TCOF1-207ENST00000504761 GJB2P29033 226 aa16.59■□□□□ 0.25
TCOF1-207ENST00000504761 MICU3Q86XE3 530 aa16.59■□□□□ 0.25
TCOF1-207ENST00000504761 USP26Q9BXU7 913 aa16.59■□□□□ 0.25
TCOF1-207ENST00000504761 HOOK1Q9UJC3 728 aaKnown RBP16.59■□□□□ 0.25
TCOF1-207ENST00000504761 KCNQ4P56696 695 aa16.58■□□□□ 0.25
TCOF1-207ENST00000504761 TFCP2L1Q9NZI6 479 aa16.58■□□□□ 0.25
TCOF1-207ENST00000504761 NSFL1CQ9UNZ2 370 aaKnown RBP16.58■□□□□ 0.24
TCOF1-207ENST00000504761 SH3TC1Q8TE82 1336 aa16.58■□□□□ 0.24
TCOF1-207ENST00000504761 CCDC129Q6ZRS4 1044 aa16.57■□□□□ 0.24
TCOF1-207ENST00000504761 CDCA7Q9BWT1 371 aaPredicted RBP16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms