RNA–Protein interactions for RNA: ENST00000398022.6

TM9SF4-202, Transcript of transmembrane 9 superfamily member 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TM9SF4, Length 3,978 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF4-202ENST00000398022 SLKQ9H2G2 1235 aaPredicted RBP7.87□□□□□ -1.15
TM9SF4-202ENST00000398022 CXorf56Q9H5V9 222 aa7.87□□□□□ -1.15
TM9SF4-202ENST00000398022 ROBO2Q9HCK4 1378 aa7.87□□□□□ -1.15
TM9SF4-202ENST00000398022 PDILTQ8N807 584 aa7.86□□□□□ -1.15
TM9SF4-202ENST00000398022 AGBL1Q96MI9 1066 aa7.86□□□□□ -1.15
TM9SF4-202ENST00000398022 LMO7Q8WWI1 1683 aa7.86□□□□□ -1.15
TM9SF4-202ENST00000398022 RGPD1P0DJD0 1748 aa7.86□□□□□ -1.15
TM9SF4-202ENST00000398022 CCDC189A1A4V9 331 aa7.86□□□□□ -1.15
TM9SF4-202ENST00000398022 GJC2Q5T442 439 aaPredicted RBP7.86□□□□□ -1.15
TM9SF4-202ENST00000398022 TCP11L2Q8N4U5 519 aa7.86□□□□□ -1.15
TM9SF4-202ENST00000398022 JMYQ8N9B5 988 aa7.86□□□□□ -1.15
TM9SF4-202ENST00000398022 SBF2Q86WG5 1849 aa7.86□□□□□ -1.15
TM9SF4-202ENST00000398022 HMMRO75330 724 aa7.86□□□□□ -1.15
TM9SF4-202ENST00000398022 KCNJ4P48050 445 aa7.86□□□□□ -1.15
TM9SF4-202ENST00000398022 RARSP54136 660 aaKnown RBP7.86□□□□□ -1.15
TM9SF4-202ENST00000398022 BIRC2Q13490 618 aa7.86□□□□□ -1.15
TM9SF4-202ENST00000398022 DZIP3Q86Y13 1208 aaKnown RBP7.86□□□□□ -1.15
TM9SF4-202ENST00000398022 MAP3K20Q9NYL2 800 aaKnown RBP7.86□□□□□ -1.15
TM9SF4-202ENST00000398022 VDRP11473 427 aa7.86□□□□□ -1.15
TM9SF4-202ENST00000398022 TBC1D10BQ4KMP7 808 aaPredicted RBP7.86□□□□□ -1.15
TM9SF4-202ENST00000398022 BICDL2A1A5D9 508 aa7.85□□□□□ -1.15
TM9SF4-202ENST00000398022 SOS2Q07890 1332 aaPredicted RBP7.85□□□□□ -1.15
TM9SF4-202ENST00000398022 IFT88Q13099 833 aa7.85□□□□□ -1.15
TM9SF4-202ENST00000398022 CARD14Q9BXL6 1004 aa7.85□□□□□ -1.15
TM9SF4-202ENST00000398022 NSD3Q9BZ95 1437 aa7.85□□□□□ -1.15
TM9SF4-202ENST00000398022 CSB-PGBD3P0DP91 1061 aa7.85□□□□□ -1.15
TM9SF4-202ENST00000398022 RRP7AQ9Y3A4 280 aaKnown RBP7.85□□□□□ -1.15
TM9SF4-202ENST00000398022 PAXBP1Q9Y5B6 917 aa7.85□□□□□ -1.15
TM9SF4-202ENST00000398022 MYOM1P52179 1685 aa7.85□□□□□ -1.15
TM9SF4-202ENST00000398022 CCDC66A2RUB6 948 aa7.85□□□□□ -1.15
TM9SF4-202ENST00000398022 BRMS1Q9HCU9 246 aa7.85□□□□□ -1.15
TM9SF4-202ENST00000398022 MED4Q9NPJ6 270 aa7.85□□□□□ -1.15
TM9SF4-202ENST00000398022 CASZ1Q86V15 1759 aa7.85□□□□□ -1.15
TM9SF4-202ENST00000398022 ADGRF5Q8IZF2 1346 aa7.84□□□□□ -1.15
TM9SF4-202ENST00000398022 GTF2A1P52655 376 aaPredicted RBP7.84□□□□□ -1.15
TM9SF4-202ENST00000398022 PSMD2Q13200 908 aa7.84□□□□□ -1.15
TM9SF4-202ENST00000398022 NUTM2GQ5VZR2 741 aa7.84□□□□□ -1.15
TM9SF4-202ENST00000398022 CHCHD3Q9NX63 227 aaKnown RBP7.84□□□□□ -1.15
TM9SF4-202ENST00000398022 CHPF2Q9P2E5 772 aa7.84□□□□□ -1.15
TM9SF4-202ENST00000398022 SUN2Q9UH99 717 aa7.84□□□□□ -1.15
TM9SF4-202ENST00000398022 USP54Q70EL1 1684 aa7.84□□□□□ -1.15
TM9SF4-202ENST00000398022 CCP110O43303 1012 aa7.84□□□□□ -1.16
TM9SF4-202ENST00000398022 SETSIPP0DME0 302 aa7.84□□□□□ -1.16
TM9SF4-202ENST00000398022 VIRMAQ69YN4 1812 aaKnown RBP7.83□□□□□ -1.16
TM9SF4-202ENST00000398022 RBM47A0AV96 593 aaKnown RBP7.83□□□□□ -1.16
TM9SF4-202ENST00000398022 U2AF1L5P0DN76 240 aaPredicted RBP7.83□□□□□ -1.16
TM9SF4-202ENST00000398022 U2AF1Q01081 240 aaKnown RBP eCLIP7.83□□□□□ -1.16
TM9SF4-202ENST00000398022 C16orf87Q6PH81 154 aa7.83□□□□□ -1.16
TM9SF4-202ENST00000398022 TBC1D32Q96NH3 1257 aa7.83□□□□□ -1.16
TM9SF4-202ENST00000398022 INO80BQ9C086 356 aaPredicted RBP7.83□□□□□ -1.16
TM9SF4-202ENST00000398022 TRAK1Q9UPV9 953 aa7.83□□□□□ -1.16
TM9SF4-202ENST00000398022 DZIP1LQ8IYY4 767 aaKnown RBP7.83□□□□□ -1.16
TM9SF4-202ENST00000398022 PAGR1Q9BTK6 254 aa7.83□□□□□ -1.16
TM9SF4-202ENST00000398022 DDX49Q9Y6V7 483 aaKnown RBP7.83□□□□□ -1.16
TM9SF4-202ENST00000398022 USP19O94966 1318 aa7.83□□□□□ -1.16
TM9SF4-202ENST00000398022 MTHFSP49914 203 aa7.83□□□□□ -1.16
TM9SF4-202ENST00000398022 SCYL1Q96KG9 808 aa7.83□□□□□ -1.16
TM9SF4-202ENST00000398022 NSD2O96028 1365 aa7.83□□□□□ -1.16
TM9SF4-202ENST00000398022 SKILP12757 684 aa7.82□□□□□ -1.16
TM9SF4-202ENST00000398022 MVPQ14764 893 aaKnown RBP7.82□□□□□ -1.16
TM9SF4-202ENST00000398022 SWT1Q5T5J6 900 aaKnown RBP7.82□□□□□ -1.16
TM9SF4-202ENST00000398022 ENOX1Q8TC92 643 aaKnown RBP7.82□□□□□ -1.16
TM9SF4-202ENST00000398022 BCL2L13Q9BXK5 485 aa7.82□□□□□ -1.16
TM9SF4-202ENST00000398022 DLC1Q96QB1 1528 aa7.82□□□□□ -1.16
TM9SF4-202ENST00000398022 EVC2Q86UK5 1308 aa7.82□□□□□ -1.16
TM9SF4-202ENST00000398022 NAT2P11245 290 aa7.82□□□□□ -1.16
TM9SF4-202ENST00000398022 IGBP1P78318 339 aa7.82□□□□□ -1.16
TM9SF4-202ENST00000398022 C11orf91Q3C1V1 193 aa7.82□□□□□ -1.16
TM9SF4-202ENST00000398022 DDX19BQ9UMR2 479 aa7.82□□□□□ -1.16
TM9SF4-202ENST00000398022 COL18A1P39060 1754 aa7.82□□□□□ -1.16
TM9SF4-202ENST00000398022 RBM5P52756 815 aaKnown RBP eCLIP7.82□□□□□ -1.16
TM9SF4-202ENST00000398022 LRRC27Q9C0I9 530 aa7.82□□□□□ -1.16
TM9SF4-202ENST00000398022 SLC12A5Q9H2X9 1139 aa7.82□□□□□ -1.16
TM9SF4-202ENST00000398022 SEC24BO95487 1268 aa7.81□□□□□ -1.16
TM9SF4-202ENST00000398022 PSME1Q06323 249 aa7.81□□□□□ -1.16
TM9SF4-202ENST00000398022 E2F5Q15329 346 aa7.81□□□□□ -1.16
TM9SF4-202ENST00000398022 CCDC70Q6NSX1 233 aa7.81□□□□□ -1.16
TM9SF4-202ENST00000398022 KLHL23Q8NBE8 558 aa7.81□□□□□ -1.16
TM9SF4-202ENST00000398022 ZNF396Q96N95 335 aaPredicted RBP7.81□□□□□ -1.16
TM9SF4-202ENST00000398022 CHMP5Q9NZZ3 219 aa7.81□□□□□ -1.16
TM9SF4-202ENST00000398022 POGKQ9P215 609 aa7.81□□□□□ -1.16
TM9SF4-202ENST00000398022 PCDHB15Q9Y5E8 787 aa7.81□□□□□ -1.16
TM9SF4-202ENST00000398022 COL14A1Q05707 1796 aaKnown RBP7.81□□□□□ -1.16
TM9SF4-202ENST00000398022 PARP4Q9UKK3 1724 aaKnown RBP7.81□□□□□ -1.16
TM9SF4-202ENST00000398022 hCG_2014768A0A024R1R8 64 aa7.81□□□□□ -1.16
TM9SF4-202ENST00000398022 KLHL10Q6JEL2 608 aa7.81□□□□□ -1.16
TM9SF4-202ENST00000398022 ZSCAN30Q86W11 494 aa7.81□□□□□ -1.16
TM9SF4-202ENST00000398022 TIGD1Q96MW7 591 aa7.81□□□□□ -1.16
TM9SF4-202ENST00000398022 C19orf44Q9H6X5 657 aa7.81□□□□□ -1.16
TM9SF4-202ENST00000398022 KIF3AQ9Y496 699 aa7.81□□□□□ -1.16
TM9SF4-202ENST00000398022 EID1Q9Y6B2 187 aa7.81□□□□□ -1.16
TM9SF4-202ENST00000398022 IL16Q14005 1332 aa7.81□□□□□ -1.16
TM9SF4-202ENST00000398022 KIF5CO60282 957 aa7.81□□□□□ -1.16
TM9SF4-202ENST00000398022 TNNT3P45378 269 aaPredicted RBP7.81□□□□□ -1.16
TM9SF4-202ENST00000398022 CADPS2Q86UW7 1296 aa7.81□□□□□ -1.16
TM9SF4-202ENST00000398022 TTC30AQ86WT1 665 aa7.81□□□□□ -1.16
TM9SF4-202ENST00000398022 CCDC47Q96A33 483 aaKnown RBP7.81□□□□□ -1.16
TM9SF4-202ENST00000398022 TBC1D2Q9BYX2 928 aa7.81□□□□□ -1.16
TM9SF4-202ENST00000398022 RMI1Q9H9A7 625 aa7.81□□□□□ -1.16
TM9SF4-202ENST00000398022 ITSN1Q15811 1721 aa7.8□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms