RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 C1GALT1C1Q96EU7 318 aa17.24■□□□□ 0.35
CCDC28A-203ENST00000617445 RMND5BQ96G75 393 aaPredicted RBP17.24■□□□□ 0.35
CCDC28A-203ENST00000617445 GPATCH1Q9BRR8 931 aaKnown RBP17.24■□□□□ 0.35
CCDC28A-203ENST00000617445 MECRQ9BV79 373 aa17.24■□□□□ 0.35
CCDC28A-203ENST00000617445 RBM24Q9BX46 236 aaKnown RBP17.24■□□□□ 0.35
CCDC28A-203ENST00000617445 FLRT3Q9NZU0 649 aa17.24■□□□□ 0.35
CCDC28A-203ENST00000617445 ITPR3Q14573 2671 aa17.24■□□□□ 0.35
CCDC28A-203ENST00000617445 GIMAP1-GIMAP5A0A087WTJ2 511 aa17.23■□□□□ 0.35
CCDC28A-203ENST00000617445 GXYLT2A0PJZ3 443 aa17.23■□□□□ 0.35
CCDC28A-203ENST00000617445 ALG1L2C9J202 215 aa17.23■□□□□ 0.35
CCDC28A-203ENST00000617445 TNFRSF21O75509 655 aa17.23■□□□□ 0.35
CCDC28A-203ENST00000617445 ANGPTL1O95841 491 aa17.23■□□□□ 0.35
CCDC28A-203ENST00000617445 SERPINB4P48594 390 aa17.23■□□□□ 0.35
CCDC28A-203ENST00000617445 PRIM2P49643 509 aa17.23■□□□□ 0.35
CCDC28A-203ENST00000617445 STX5Q13190 355 aa17.23■□□□□ 0.35
CCDC28A-203ENST00000617445 CPEB4Q17RY0 729 aaKnown RBP eCLIP17.23■□□□□ 0.35
CCDC28A-203ENST00000617445 GRAMD1BQ3KR37 738 aa17.23■□□□□ 0.35
CCDC28A-203ENST00000617445 XKR7Q5GH72 579 aa17.23■□□□□ 0.35
CCDC28A-203ENST00000617445 P4HA3Q7Z4N8 544 aa17.23■□□□□ 0.35
CCDC28A-203ENST00000617445 CLHC1Q8NHS4 586 aa17.23■□□□□ 0.35
CCDC28A-203ENST00000617445 FAM110BQ8TC76 370 aa17.23■□□□□ 0.35
CCDC28A-203ENST00000617445 SLC9A6Q92581 669 aa17.23■□□□□ 0.35
CCDC28A-203ENST00000617445 GIMAP5Q96F15 307 aa17.23■□□□□ 0.35
CCDC28A-203ENST00000617445 DACH2Q96NX9 599 aa17.23■□□□□ 0.35
CCDC28A-203ENST00000617445 PRPF18Q99633 342 aaKnown RBP17.23■□□□□ 0.35
CCDC28A-203ENST00000617445 RTN4RQ9BZR6 473 aa17.23■□□□□ 0.35
CCDC28A-203ENST00000617445 ATAD3AQ9NVI7 634 aa17.23■□□□□ 0.35
CCDC28A-203ENST00000617445 GIN1Q9NXP7 522 aa17.23■□□□□ 0.35
CCDC28A-203ENST00000617445 PACSIN3Q9UKS6 424 aa17.23■□□□□ 0.35
CCDC28A-203ENST00000617445 ZNF337Q9Y3M9 751 aa17.23■□□□□ 0.35
CCDC28A-203ENST00000617445 AP4B1Q9Y6B7 739 aa17.23■□□□□ 0.35
CCDC28A-203ENST00000617445 MTORP42345 2549 aa17.22■□□□□ 0.35
CCDC28A-203ENST00000617445 C2CD3Q4AC94 2353 aa17.22■□□□□ 0.35
CCDC28A-203ENST00000617445 A0A087WZY1 265 aa17.22■□□□□ 0.35
CCDC28A-203ENST00000617445 OR2M5A3KFT3 312 aa17.22■□□□□ 0.35
CCDC28A-203ENST00000617445 SLC22A20A6NK97 555 aa17.22■□□□□ 0.35
CCDC28A-203ENST00000617445 TMEM233B4DJY2 109 aa17.22■□□□□ 0.35
CCDC28A-203ENST00000617445 SCAMP2O15127 329 aaKnown RBP17.22■□□□□ 0.35
CCDC28A-203ENST00000617445 ALOX5P09917 674 aa17.22■□□□□ 0.35
CCDC28A-203ENST00000617445 TBXA2RP21731 343 aa17.22■□□□□ 0.35
CCDC28A-203ENST00000617445 CPA2P48052 419 aa17.22■□□□□ 0.35
CCDC28A-203ENST00000617445 ART1P52961 327 aa17.22■□□□□ 0.35
CCDC28A-203ENST00000617445 RPS3AP61247 264 aaKnown RBP17.22■□□□□ 0.35
CCDC28A-203ENST00000617445 FGFBP1Q14512 234 aa17.22■□□□□ 0.35
CCDC28A-203ENST00000617445 MFSD12Q6NUT3 480 aa17.22■□□□□ 0.35
CCDC28A-203ENST00000617445 SZRD1Q7Z422 152 aa17.22■□□□□ 0.35
CCDC28A-203ENST00000617445 MISPQ8IVT2 679 aa17.22■□□□□ 0.35
CCDC28A-203ENST00000617445 MREGQ8N565 214 aa17.22■□□□□ 0.35
CCDC28A-203ENST00000617445 PIK3R3Q92569 461 aa17.22■□□□□ 0.35
CCDC28A-203ENST00000617445 FOXC2Q99958 501 aa17.22■□□□□ 0.35
CCDC28A-203ENST00000617445 ZNF175Q9Y473 711 aa17.22■□□□□ 0.35
CCDC28A-203ENST00000617445 TNFSF12-TNFSF13A0A0A6YY99 330 aa17.21■□□□□ 0.35
CCDC28A-203ENST00000617445 A0A1W2PNV4 684 aa17.21■□□□□ 0.35
CCDC28A-203ENST00000617445 A0A1W2PRB8 838 aa17.21■□□□□ 0.35
CCDC28A-203ENST00000617445 C17orf51A8MQB3 221 aa17.21■□□□□ 0.35
CCDC28A-203ENST00000617445 A8MXE2 369 aa17.21■□□□□ 0.35
CCDC28A-203ENST00000617445 MSTNO14793 375 aa17.21■□□□□ 0.35
CCDC28A-203ENST00000617445 NDUFB5O43674 189 aa17.21■□□□□ 0.35
CCDC28A-203ENST00000617445 TYROBPO43914 113 aa17.21■□□□□ 0.35
CCDC28A-203ENST00000617445 PEX11AO75192 247 aa17.21■□□□□ 0.35
CCDC28A-203ENST00000617445 TNFSF13O75888 250 aa17.21■□□□□ 0.35
CCDC28A-203ENST00000617445 KCNK2O95069 426 aa17.21■□□□□ 0.35
CCDC28A-203ENST00000617445 TGM6O95932 706 aa17.21■□□□□ 0.35
CCDC28A-203ENST00000617445 IGKV1D-16P01601 117 aa17.21■□□□□ 0.35
CCDC28A-203ENST00000617445 BPGMP07738 259 aa17.21■□□□□ 0.35
CCDC28A-203ENST00000617445 TCEA1P23193 301 aaKnown RBP17.21■□□□□ 0.35
CCDC28A-203ENST00000617445 IST1P53990 364 aa17.21■□□□□ 0.35
CCDC28A-203ENST00000617445 MAD2L1Q13257 205 aaPredicted RBP17.21■□□□□ 0.35
CCDC28A-203ENST00000617445 LSM12Q3MHD2 195 aaKnown RBP17.21■□□□□ 0.35
CCDC28A-203ENST00000617445 C6orf136Q5SQH8 315 aa17.21■□□□□ 0.35
CCDC28A-203ENST00000617445 CPTPQ5TA50 214 aa17.21■□□□□ 0.35
CCDC28A-203ENST00000617445 ZCCHC23Q6ZST2 131 aa17.21■□□□□ 0.35
CCDC28A-203ENST00000617445 EXOC3L1Q86VI1 746 aa17.21■□□□□ 0.35
CCDC28A-203ENST00000617445 CDC20BQ86Y33 519 aa17.21■□□□□ 0.35
CCDC28A-203ENST00000617445 UBQLNLQ8IYU4 475 aa17.21■□□□□ 0.35
CCDC28A-203ENST00000617445 GCNT2Q8N0V5 402 aa17.21■□□□□ 0.35
CCDC28A-203ENST00000617445 SLC16A11Q8NCK7 471 aa17.21■□□□□ 0.35
CCDC28A-203ENST00000617445 ZIM3Q96PE6 472 aa17.21■□□□□ 0.35
CCDC28A-203ENST00000617445 STACQ99469 402 aa17.21■□□□□ 0.35
CCDC28A-203ENST00000617445 UBQLN4Q9NRR5 601 aa17.21■□□□□ 0.35
CCDC28A-203ENST00000617445 DUSP22Q9NRW4 184 aa17.21■□□□□ 0.35
CCDC28A-203ENST00000617445 GALNT8Q9NY28 637 aa17.21■□□□□ 0.35
CCDC28A-203ENST00000617445 ST6GALNAC2Q9UJ37 374 aa17.21■□□□□ 0.35
CCDC28A-203ENST00000617445 MAP1AP78559 2803 aaPredicted RBP17.2■□□□□ 0.34
CCDC28A-203ENST00000617445 SLU7O95391 586 aaKnown RBP17.2■□□□□ 0.34
CCDC28A-203ENST00000617445 OXSR1O95747 527 aaPredicted RBP17.2■□□□□ 0.34
CCDC28A-203ENST00000617445 KRT16P08779 473 aa17.2■□□□□ 0.34
CCDC28A-203ENST00000617445 ACP2P11117 423 aa17.2■□□□□ 0.34
CCDC28A-203ENST00000617445 HPGDP15428 266 aa17.2■□□□□ 0.34
CCDC28A-203ENST00000617445 ZNF17P17021 662 aa17.2■□□□□ 0.34
CCDC28A-203ENST00000617445 PRPS1L1P21108 318 aa17.2■□□□□ 0.34
CCDC28A-203ENST00000617445 DNASE1P24855 282 aa17.2■□□□□ 0.34
CCDC28A-203ENST00000617445 DUSP5Q16690 384 aa17.2■□□□□ 0.34
CCDC28A-203ENST00000617445 TMEM44Q2T9K0 475 aa17.2■□□□□ 0.34
CCDC28A-203ENST00000617445 EXOSC6Q5RKV6 272 aaKnown RBP17.2■□□□□ 0.34
CCDC28A-203ENST00000617445 FBXW10Q5XX13 1052 aa17.2■□□□□ 0.34
CCDC28A-203ENST00000617445 APOOLQ6UXV4 268 aa17.2■□□□□ 0.34
CCDC28A-203ENST00000617445 LUZP2Q86TE4 346 aa17.2■□□□□ 0.34
CCDC28A-203ENST00000617445 COX18Q8N8Q8 333 aa17.2■□□□□ 0.34
CCDC28A-203ENST00000617445 OR4C3Q8NH37 302 aa17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 83.4 ms