RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 PERM1Q5SV97 790 aa15.17■□□□□ 0.02
COL4A1-204ENST00000543140 RASSF6Q6ZTQ3 369 aa15.17■□□□□ 0.02
COL4A1-204ENST00000543140 RBM12BQ8IXT5 1001 aaKnown RBP15.17■□□□□ 0.02
COL4A1-204ENST00000543140 VWA5B2Q8N398 1253 aa15.17■□□□□ 0.02
COL4A1-204ENST00000543140 ZNF614Q8N883 585 aa15.17■□□□□ 0.02
COL4A1-204ENST00000543140 OR52I1Q8NGK6 324 aa15.17■□□□□ 0.02
COL4A1-204ENST00000543140 S100ZQ8WXG8 99 aa15.17■□□□□ 0.02
COL4A1-204ENST00000543140 HHATLQ9HCP6 504 aa15.17■□□□□ 0.02
COL4A1-204ENST00000543140 TMEM131Q92545 1883 aa15.17■□□□□ 0.02
COL4A1-204ENST00000543140 CHURC1-FNTBB4DL54 471 aa15.17■□□□□ 0.02
COL4A1-204ENST00000543140 WWP2O00308 870 aa15.17■□□□□ 0.02
COL4A1-204ENST00000543140 CDC42EP2O14613 210 aa15.17■□□□□ 0.02
COL4A1-204ENST00000543140 DSCR3O14972 297 aa15.17■□□□□ 0.02
COL4A1-204ENST00000543140 KIAA0513O60268 411 aa15.17■□□□□ 0.02
COL4A1-204ENST00000543140 SDC3O75056 442 aa15.17■□□□□ 0.02
COL4A1-204ENST00000543140 CBX7O95931 251 aa15.17■□□□□ 0.02
COL4A1-204ENST00000543140 CSF2P04141 144 aa15.17■□□□□ 0.02
COL4A1-204ENST00000543140 DBIP07108 87 aaKnown RBP15.17■□□□□ 0.02
COL4A1-204ENST00000543140 HBQ1P09105 142 aa15.17■□□□□ 0.02
COL4A1-204ENST00000543140 FUT1P19526 365 aa15.17■□□□□ 0.02
COL4A1-204ENST00000543140 ELOCQ15369 112 aa15.17■□□□□ 0.02
COL4A1-204ENST00000543140 EIPR1Q53HC9 387 aa15.17■□□□□ 0.02
COL4A1-204ENST00000543140 DCDC5Q6ZRR9 648 aa15.17■□□□□ 0.02
COL4A1-204ENST00000543140 MBOAT2Q6ZWT7 520 aa15.17■□□□□ 0.02
COL4A1-204ENST00000543140 SHFQ7M4L6 423 aa15.17■□□□□ 0.02
COL4A1-204ENST00000543140 CENPSQ8N2Z9 138 aa15.17■□□□□ 0.02
COL4A1-204ENST00000543140 ARHGEF39Q8N4T4 335 aa15.17■□□□□ 0.02
COL4A1-204ENST00000543140 TMEM163Q8TC26 289 aa15.17■□□□□ 0.02
COL4A1-204ENST00000543140 SNRNP27Q8WVK2 155 aaKnown RBP15.17■□□□□ 0.02
COL4A1-204ENST00000543140 FGF11Q92914 225 aa15.17■□□□□ 0.02
COL4A1-204ENST00000543140 CTHRC1Q96CG8 243 aa15.17■□□□□ 0.02
COL4A1-204ENST00000543140 SLC38A3Q99624 504 aa15.17■□□□□ 0.02
COL4A1-204ENST00000543140 ANKRD19PQ9H560 264 aa15.17■□□□□ 0.02
COL4A1-204ENST00000543140 EXOSC4Q9NPD3 245 aaKnown RBP15.17■□□□□ 0.02
COL4A1-204ENST00000543140 TGFBR3LH3BV60 316 aa15.16■□□□□ 0.02
COL4A1-204ENST00000543140 KPNA4O00629 521 aaPredicted RBP15.16■□□□□ 0.02
COL4A1-204ENST00000543140 GPX5O75715 221 aa15.16■□□□□ 0.02
COL4A1-204ENST00000543140 THBS1P07996 1170 aa15.16■□□□□ 0.02
COL4A1-204ENST00000543140 NID1P14543 1247 aa15.16■□□□□ 0.02
COL4A1-204ENST00000543140 ZNF12P17014 697 aa15.16■□□□□ 0.02
COL4A1-204ENST00000543140 ETV5P41161 510 aa15.16■□□□□ 0.02
COL4A1-204ENST00000543140 ETV1P50549 477 aa15.16■□□□□ 0.02
COL4A1-204ENST00000543140 POU6F2P78424 691 aaPredicted RBP15.16■□□□□ 0.02
COL4A1-204ENST00000543140 RHAGQ02094 409 aa15.16■□□□□ 0.02
COL4A1-204ENST00000543140 RGS21Q2M5E4 152 aa15.16■□□□□ 0.02
COL4A1-204ENST00000543140 DEFB133Q30KQ1 61 aa15.16■□□□□ 0.02
COL4A1-204ENST00000543140 WDR88Q6ZMY6 472 aa15.16■□□□□ 0.02
COL4A1-204ENST00000543140 RANBP3LQ86VV4 465 aaPredicted RBP15.16■□□□□ 0.02
COL4A1-204ENST00000543140 KBTBD8Q8NFY9 601 aa15.16■□□□□ 0.02
COL4A1-204ENST00000543140 OR4N2Q8NGD1 307 aa15.16■□□□□ 0.02
COL4A1-204ENST00000543140 OR4Q3Q8NH05 313 aa15.16■□□□□ 0.02
COL4A1-204ENST00000543140 MND1Q9BWT6 205 aa15.16■□□□□ 0.02
COL4A1-204ENST00000543140 TAPBPLQ9BX59 468 aa15.16■□□□□ 0.02
COL4A1-204ENST00000543140 POLR2J2Q9GZM3 115 aaKnown RBP15.16■□□□□ 0.02
COL4A1-204ENST00000543140 KLHL3Q9UH77 587 aa15.16■□□□□ 0.02
COL4A1-204ENST00000543140 SULT1C4O75897 302 aa15.16■□□□□ 0.02
COL4A1-204ENST00000543140 SCG5P05408 212 aa15.16■□□□□ 0.02
COL4A1-204ENST00000543140 PROS1P07225 676 aa15.16■□□□□ 0.02
COL4A1-204ENST00000543140 SLC35E2P0CK97 266 aa15.16■□□□□ 0.02
COL4A1-204ENST00000543140 CD27P26842 260 aa15.16■□□□□ 0.02
COL4A1-204ENST00000543140 SSTR4P31391 388 aa15.16■□□□□ 0.02
COL4A1-204ENST00000543140 BTG2P78543 158 aa15.16■□□□□ 0.02
COL4A1-204ENST00000543140 IFITM3Q01628 133 aa15.16■□□□□ 0.02
COL4A1-204ENST00000543140 FZD5Q13467 585 aa15.16■□□□□ 0.02
COL4A1-204ENST00000543140 EXOSC6Q5RKV6 272 aaKnown RBP15.16■□□□□ 0.02
COL4A1-204ENST00000543140 CHCHD2P9Q5T1J5 151 aaPredicted RBP15.16■□□□□ 0.02
COL4A1-204ENST00000543140 CYP4Z2PQ8N1L4 340 aa15.16■□□□□ 0.02
COL4A1-204ENST00000543140 NANOGP1Q8N7R0 232 aa15.16■□□□□ 0.02
COL4A1-204ENST00000543140 SLC38A2Q96QD8 506 aa15.16■□□□□ 0.02
COL4A1-204ENST00000543140 STACQ99469 402 aa15.16■□□□□ 0.02
COL4A1-204ENST00000543140 CDADC1Q9BWV3 514 aa15.16■□□□□ 0.02
COL4A1-204ENST00000543140 SATB2Q9UPW6 733 aa15.16■□□□□ 0.02
COL4A1-204ENST00000543140 CDHR4A6H8M9 788 aa15.15■□□□□ 0.02
COL4A1-204ENST00000543140 SYNDIG1LA6NDD5 238 aa15.15■□□□□ 0.02
COL4A1-204ENST00000543140 METTL15A6NJ78 407 aa15.15■□□□□ 0.02
COL4A1-204ENST00000543140 METTL12A8MUP2 240 aa15.15■□□□□ 0.02
COL4A1-204ENST00000543140 MYL12BO14950 172 aa15.15■□□□□ 0.02
COL4A1-204ENST00000543140 NME1P15531 152 aaKnown RBP15.15■□□□□ 0.02
COL4A1-204ENST00000543140 POU3F3P20264 500 aaPredicted RBP15.15■□□□□ 0.02
COL4A1-204ENST00000543140 RPS4Y1P22090 263 aaKnown RBP15.15■□□□□ 0.02
COL4A1-204ENST00000543140 FPR3P25089 353 aa15.15■□□□□ 0.02
COL4A1-204ENST00000543140 NUDT1P36639 197 aa15.15■□□□□ 0.02
COL4A1-204ENST00000543140 CAPZBP47756 277 aa15.15■□□□□ 0.02
COL4A1-204ENST00000543140 LIMK1P53667 647 aa15.15■□□□□ 0.02
COL4A1-204ENST00000543140 GFERP55789 205 aa15.15■□□□□ 0.02
COL4A1-204ENST00000543140 STX4Q12846 297 aa15.15■□□□□ 0.02
COL4A1-204ENST00000543140 OR1Q1Q15612 314 aa15.15■□□□□ 0.02
COL4A1-204ENST00000543140 PRTGQ2VWP7 1150 aa15.15■□□□□ 0.02
COL4A1-204ENST00000543140 SLC25A30Q5SVS4 291 aa15.15■□□□□ 0.02
COL4A1-204ENST00000543140 AMER2Q8N7J2 671 aa15.15■□□□□ 0.02
COL4A1-204ENST00000543140 ANKK1Q8NFD2 765 aa15.15■□□□□ 0.02
COL4A1-204ENST00000543140 RNFT2Q96EX2 444 aa15.15■□□□□ 0.02
COL4A1-204ENST00000543140 RBM18Q96H35 190 aaKnown RBP15.15■□□□□ 0.02
COL4A1-204ENST00000543140 TGM7Q96PF1 710 aa15.15■□□□□ 0.02
COL4A1-204ENST00000543140 PRSS27Q9BQR3 290 aa15.15■□□□□ 0.02
COL4A1-204ENST00000543140 TESQ9UGI8 421 aaKnown RBP15.15■□□□□ 0.02
COL4A1-204ENST00000543140 VCANP13611 3396 aa15.15■□□□□ 0.02
COL4A1-204ENST00000543140 PNMA8CA0A1B0GUJ8 204 aa15.15■□□□□ 0.02
COL4A1-204ENST00000543140 LOC105378220A0A1B0GUY1 285 aaPredicted RBP15.15■□□□□ 0.02
COL4A1-204ENST00000543140 FOXS1O43638 330 aa15.15■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 129.1 ms