RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 SLX4IPQ5VYV7 408 aa8.1□□□□□ -1.11
USP40-203ENST00000427112 PRSS41Q7RTY9 318 aa8.1□□□□□ -1.11
USP40-203ENST00000427112 NUDT13Q86X67 352 aa8.1□□□□□ -1.11
USP40-203ENST00000427112 GPR135Q8IZ08 494 aa8.1□□□□□ -1.11
USP40-203ENST00000427112 LINC00471Q8N535 108 aa8.1□□□□□ -1.11
USP40-203ENST00000427112 OR5T3Q8NGG3 340 aa8.1□□□□□ -1.11
USP40-203ENST00000427112 OR13C2Q8NGS9 318 aa8.1□□□□□ -1.11
USP40-203ENST00000427112 ADAMTS15Q8TE58 950 aa8.1□□□□□ -1.11
USP40-203ENST00000427112 PDXPQ96GD0 296 aa8.1□□□□□ -1.11
USP40-203ENST00000427112 MAP6Q96JE9 813 aa8.1□□□□□ -1.11
USP40-203ENST00000427112 AMDHD1Q96NU7 426 aa8.1□□□□□ -1.11
USP40-203ENST00000427112 GSDMCQ9BYG8 508 aa8.1□□□□□ -1.11
USP40-203ENST00000427112 ZCCHC2Q9C0B9 1178 aaKnown RBP8.1□□□□□ -1.11
USP40-203ENST00000427112 SPRTNQ9H040 489 aaPredicted RBP8.1□□□□□ -1.11
USP40-203ENST00000427112 BRF2Q9HAW0 419 aa8.1□□□□□ -1.11
USP40-203ENST00000427112 MYNNQ9NPC7 610 aa8.1□□□□□ -1.11
USP40-203ENST00000427112 MAN2C1Q9NTJ4 1040 aa8.1□□□□□ -1.11
USP40-203ENST00000427112 AHSPQ9NZD4 102 aa8.1□□□□□ -1.11
USP40-203ENST00000427112 TNFRSF10DQ9UBN6 386 aa8.1□□□□□ -1.11
USP40-203ENST00000427112 ENTPD4Q9Y227 616 aa8.1□□□□□ -1.11
USP40-203ENST00000427112 SSNA1O43805 119 aa8.09□□□□□ -1.11
USP40-203ENST00000427112 S100A9P06702 114 aaKnown RBP8.09□□□□□ -1.11
USP40-203ENST00000427112 HSD3B1P14060 373 aa8.09□□□□□ -1.11
USP40-203ENST00000427112 NTSP30990 170 aa8.09□□□□□ -1.11
USP40-203ENST00000427112 BCL6P41182 706 aa8.09□□□□□ -1.11
USP40-203ENST00000427112 SLC1A3P43003 542 aa8.09□□□□□ -1.11
USP40-203ENST00000427112 RPA4Q13156 261 aa8.09□□□□□ -1.11
USP40-203ENST00000427112 C21orf62-AS1Q17RA5 79 aa8.09□□□□□ -1.11
USP40-203ENST00000427112 TRMT12Q53H54 448 aaKnown RBP8.09□□□□□ -1.11
USP40-203ENST00000427112 CEACAM19Q7Z692 300 aa8.09□□□□□ -1.11
USP40-203ENST00000427112 UBE3DQ7Z6J8 389 aa8.09□□□□□ -1.11
USP40-203ENST00000427112 C17orf47Q8NEP4 570 aa8.09□□□□□ -1.11
USP40-203ENST00000427112 OR14C36Q8NHC7 312 aa8.09□□□□□ -1.11
USP40-203ENST00000427112 CHFRQ96EP1 664 aa8.09□□□□□ -1.11
USP40-203ENST00000427112 TRMT2BQ96GJ1 504 aaKnown RBP8.09□□□□□ -1.11
USP40-203ENST00000427112 MAGEB10Q96LZ2 347 aaPredicted RBP8.09□□□□□ -1.11
USP40-203ENST00000427112 LYSMD1Q96S90 227 aa8.09□□□□□ -1.11
USP40-203ENST00000427112 TAPBPLQ9BX59 468 aa8.09□□□□□ -1.11
USP40-203ENST00000427112 KCNN2Q9H2S1 579 aa8.09□□□□□ -1.11
USP40-203ENST00000427112 MGAT4BQ9UQ53 548 aa8.09□□□□□ -1.11
USP40-203ENST00000427112 LSM2Q9Y333 95 aaKnown RBP8.09□□□□□ -1.11
USP40-203ENST00000427112 DAPL1A0PJW8 107 aa8.09□□□□□ -1.11
USP40-203ENST00000427112 CHURC1-FNTBB4DL54 471 aa8.09□□□□□ -1.11
USP40-203ENST00000427112 AIFM1O95831 613 aa8.09□□□□□ -1.11
USP40-203ENST00000427112 FGBP02675 491 aa8.09□□□□□ -1.11
USP40-203ENST00000427112 PRKAR1AP10644 381 aa8.09□□□□□ -1.11
USP40-203ENST00000427112 ZNF250P15622 560 aa8.09□□□□□ -1.11
USP40-203ENST00000427112 CCR4P51679 360 aa8.09□□□□□ -1.11
USP40-203ENST00000427112 CCR8P51685 355 aa8.09□□□□□ -1.11
USP40-203ENST00000427112 ILKQ13418 452 aa8.09□□□□□ -1.11
USP40-203ENST00000427112 HES5Q5TA89 166 aa8.09□□□□□ -1.11
USP40-203ENST00000427112 ACOT4Q8N9L9 421 aa8.09□□□□□ -1.11
USP40-203ENST00000427112 NUP43Q8NFH3 380 aa8.09□□□□□ -1.11
USP40-203ENST00000427112 OR6K6Q8NGW6 343 aa8.09□□□□□ -1.11
USP40-203ENST00000427112 CEP76Q8TAP6 659 aa8.09□□□□□ -1.11
USP40-203ENST00000427112 ZNF671Q8TAW3 534 aa8.09□□□□□ -1.11
USP40-203ENST00000427112 OVCA2Q8WZ82 227 aa8.09□□□□□ -1.11
USP40-203ENST00000427112 SUSD6Q92537 303 aa8.09□□□□□ -1.11
USP40-203ENST00000427112 AKAP1Q92667 903 aaKnown RBP eCLIP8.09□□□□□ -1.11
USP40-203ENST00000427112 OTUB2Q96DC9 234 aa8.09□□□□□ -1.11
USP40-203ENST00000427112 PAWRQ96IZ0 340 aaKnown RBP8.09□□□□□ -1.11
USP40-203ENST00000427112 PDCD1LG2Q9BQ51 273 aa8.09□□□□□ -1.11
USP40-203ENST00000427112 AICDAQ9GZX7 198 aa8.09□□□□□ -1.11
USP40-203ENST00000427112 SLC25A19Q9HC21 320 aa8.09□□□□□ -1.11
USP40-203ENST00000427112 FKBP14Q9NWM8 211 aa8.09□□□□□ -1.11
USP40-203ENST00000427112 KCMF1Q9P0J7 381 aa8.09□□□□□ -1.11
USP40-203ENST00000427112 EIF3KQ9UBQ5 218 aaKnown RBP8.09□□□□□ -1.11
USP40-203ENST00000427112 MGAT4AQ9UM21 535 aa8.09□□□□□ -1.11
USP40-203ENST00000427112 NPIPB8E9PQR5 432 aa8.09□□□□□ -1.11
USP40-203ENST00000427112 FAAHO00519 579 aa8.09□□□□□ -1.11
USP40-203ENST00000427112 SPINT1O43278 529 aa8.09□□□□□ -1.11
USP40-203ENST00000427112 ASGR2P07307 311 aa8.09□□□□□ -1.11
USP40-203ENST00000427112 ADH1AP07327 375 aa8.09□□□□□ -1.11
USP40-203ENST00000427112 ADH5P11766 374 aa8.09□□□□□ -1.11
USP40-203ENST00000427112 ENPP1P22413 925 aa8.09□□□□□ -1.11
USP40-203ENST00000427112 PSMA3P25788 255 aa8.09□□□□□ -1.11
USP40-203ENST00000427112 CST5P28325 142 aaPredicted RBP8.09□□□□□ -1.11
USP40-203ENST00000427112 HOXD10P28358 340 aa8.09□□□□□ -1.11
USP40-203ENST00000427112 GDI2P50395 445 aaKnown RBP8.09□□□□□ -1.11
USP40-203ENST00000427112 ZNF81P51508 661 aa8.09□□□□□ -1.11
USP40-203ENST00000427112 RHAGQ02094 409 aa8.09□□□□□ -1.11
USP40-203ENST00000427112 CRYZQ08257 329 aaKnown RBP8.09□□□□□ -1.11
USP40-203ENST00000427112 FUT5Q11128 374 aa8.09□□□□□ -1.11
USP40-203ENST00000427112 SQSTM1Q13501 440 aa8.09□□□□□ -1.11
USP40-203ENST00000427112 ZNF234Q14588 700 aa8.09□□□□□ -1.11
USP40-203ENST00000427112 EIF4HQ15056 248 aaKnown RBP8.09□□□□□ -1.11
USP40-203ENST00000427112 OR4C11Q6IEV9 310 aa8.09□□□□□ -1.11
USP40-203ENST00000427112 ANKRD54Q6NXT1 300 aa8.09□□□□□ -1.11
USP40-203ENST00000427112 C10orf53Q8N6V4 93 aa8.09□□□□□ -1.11
USP40-203ENST00000427112 OR4K13Q8NH42 304 aa8.09□□□□□ -1.11
USP40-203ENST00000427112 C9orf43Q8TAL5 461 aaPredicted RBP8.09□□□□□ -1.11
USP40-203ENST00000427112 SLC38A2Q96QD8 506 aa8.09□□□□□ -1.11
USP40-203ENST00000427112 NDUFB11Q9NX14 153 aa8.09□□□□□ -1.11
USP40-203ENST00000427112 IQCMA0A1B0GVH7 501 aa8.08□□□□□ -1.12
USP40-203ENST00000427112 EML2O95834 649 aa8.08□□□□□ -1.12
USP40-203ENST00000427112 ARSBP15848 533 aa8.08□□□□□ -1.12
USP40-203ENST00000427112 DGCR2P98153 550 aa8.08□□□□□ -1.12
USP40-203ENST00000427112 E2F2Q14209 437 aa8.08□□□□□ -1.12
USP40-203ENST00000427112 DMRTC1Q5HYR2 192 aa8.08□□□□□ -1.12
USP40-203ENST00000427112 TBC1D19Q8N5T2 526 aa8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 143 ms