RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 ZNF551Q7Z340 670 aaPredicted RBP17.28■□□□□ 0.36
CCDC28A-203ENST00000617445 CDRT4Q8N9R6 151 aa17.28■□□□□ 0.36
CCDC28A-203ENST00000617445 OR2M3Q8NG83 312 aa17.28■□□□□ 0.36
CCDC28A-203ENST00000617445 OR2T11Q8NH01 316 aa17.28■□□□□ 0.36
CCDC28A-203ENST00000617445 OR2W6PQ8NHA6 318 aa17.28■□□□□ 0.36
CCDC28A-203ENST00000617445 FAM111AQ96PZ2 611 aa17.28■□□□□ 0.36
CCDC28A-203ENST00000617445 POLDIP3Q9BY77 421 aaKnown RBP17.28■□□□□ 0.36
CCDC28A-203ENST00000617445 PIGMQ9H3S5 423 aa17.28■□□□□ 0.36
CCDC28A-203ENST00000617445 DSN1Q9H410 356 aa17.28■□□□□ 0.36
CCDC28A-203ENST00000617445 SH3BP4Q9P0V3 963 aa17.28■□□□□ 0.36
CCDC28A-203ENST00000617445 CLCF1Q9UBD9 225 aa17.28■□□□□ 0.36
CCDC28A-203ENST00000617445 FIS1Q9Y3D6 152 aa17.28■□□□□ 0.36
CCDC28A-203ENST00000617445 PTGDR2Q9Y5Y4 395 aa17.28■□□□□ 0.36
CCDC28A-203ENST00000617445 PCNX3Q9H6A9 2034 aa17.28■□□□□ 0.36
CCDC28A-203ENST00000617445 TUBAL3A6NHL2 446 aa17.27■□□□□ 0.36
CCDC28A-203ENST00000617445 CRHP06850 196 aa17.27■□□□□ 0.36
CCDC28A-203ENST00000617445 MAPK1P28482 360 aa17.27■□□□□ 0.36
CCDC28A-203ENST00000617445 MAP3K8P41279 467 aa17.27■□□□□ 0.36
CCDC28A-203ENST00000617445 STARP49675 285 aa17.27■□□□□ 0.36
CCDC28A-203ENST00000617445 VSNL1P62760 191 aa17.27■□□□□ 0.36
CCDC28A-203ENST00000617445 RPL38P63173 70 aaKnown RBP17.27■□□□□ 0.36
CCDC28A-203ENST00000617445 C17orf67Q0P5P2 114 aa17.27■□□□□ 0.36
CCDC28A-203ENST00000617445 UGT3A2Q3SY77 523 aa17.27■□□□□ 0.36
CCDC28A-203ENST00000617445 DDIASQ8IXT1 998 aa17.27■□□□□ 0.36
CCDC28A-203ENST00000617445 TWIST2Q8WVJ9 160 aa17.27■□□□□ 0.36
CCDC28A-203ENST00000617445 NINJ1Q92982 152 aa17.27■□□□□ 0.36
CCDC28A-203ENST00000617445 GFM2Q969S9 779 aaKnown RBP17.27■□□□□ 0.36
CCDC28A-203ENST00000617445 PPP3R2Q96LZ3 170 aa17.27■□□□□ 0.36
CCDC28A-203ENST00000617445 TSSK3Q96PN8 268 aa17.27■□□□□ 0.36
CCDC28A-203ENST00000617445 RASSF1Q9NS23 344 aa17.27■□□□□ 0.36
CCDC28A-203ENST00000617445 A6NNC1 897 aa17.26■□□□□ 0.35
CCDC28A-203ENST00000617445 EEF1E1-BLOC1S5C9J1V9 151 aa17.26■□□□□ 0.35
CCDC28A-203ENST00000617445 EEF1E1O43324 174 aaKnown RBP17.26■□□□□ 0.35
CCDC28A-203ENST00000617445 AKAP10O43572 662 aa17.26■□□□□ 0.35
CCDC28A-203ENST00000617445 HCRTR2O43614 444 aa17.26■□□□□ 0.35
CCDC28A-203ENST00000617445 NKX2-2O95096 273 aa17.26■□□□□ 0.35
CCDC28A-203ENST00000617445 EPXP11678 715 aa17.26■□□□□ 0.35
CCDC28A-203ENST00000617445 HK1P19367 917 aa17.26■□□□□ 0.35
CCDC28A-203ENST00000617445 LCN1P31025 176 aa17.26■□□□□ 0.35
CCDC28A-203ENST00000617445 DNAJA1P31689 397 aaKnown RBP17.26■□□□□ 0.35
CCDC28A-203ENST00000617445 B3GALT5-AS1P59052 145 aa17.26■□□□□ 0.35
CCDC28A-203ENST00000617445 PRR5P85299 388 aa17.26■□□□□ 0.35
CCDC28A-203ENST00000617445 OCRLQ01968 901 aa17.26■□□□□ 0.35
CCDC28A-203ENST00000617445 MLC1Q15049 377 aa17.26■□□□□ 0.35
CCDC28A-203ENST00000617445 OR2A2Q6IF42 318 aa17.26■□□□□ 0.35
CCDC28A-203ENST00000617445 WDR93Q6P2C0 686 aa17.26■□□□□ 0.35
CCDC28A-203ENST00000617445 GRAMD2AQ8IUY3 354 aa17.26■□□□□ 0.35
CCDC28A-203ENST00000617445 MEIOBQ8N635 442 aa17.26■□□□□ 0.35
CCDC28A-203ENST00000617445 NATD1Q8N6N6 113 aa17.26■□□□□ 0.35
CCDC28A-203ENST00000617445 NUP43Q8NFH3 380 aa17.26■□□□□ 0.35
CCDC28A-203ENST00000617445 TCP10LQ8TDR4 215 aa17.26■□□□□ 0.35
CCDC28A-203ENST00000617445 GPR151Q8TDV0 419 aa17.26■□□□□ 0.35
CCDC28A-203ENST00000617445 DUSP19Q8WTR2 217 aa17.26■□□□□ 0.35
CCDC28A-203ENST00000617445 CIDECQ96AQ7 238 aaPredicted RBP17.26■□□□□ 0.35
CCDC28A-203ENST00000617445 PIGQQ9BRB3 760 aa17.26■□□□□ 0.35
CCDC28A-203ENST00000617445 G6PC3Q9BUM1 346 aa17.26■□□□□ 0.35
CCDC28A-203ENST00000617445 TBL1XR1Q9BZK7 514 aa17.26■□□□□ 0.35
CCDC28A-203ENST00000617445 CLEC4MQ9H2X3 399 aaPredicted RBP17.26■□□□□ 0.35
CCDC28A-203ENST00000617445 STOML1Q9UBI4 398 aa17.26■□□□□ 0.35
CCDC28A-203ENST00000617445 RPH3AQ9Y2J0 694 aaPredicted RBP17.26■□□□□ 0.35
CCDC28A-203ENST00000617445 IGLV3-32A0A0A0MS00 114 aa17.25■□□□□ 0.35
CCDC28A-203ENST00000617445 EMC8O43402 210 aa17.25■□□□□ 0.35
CCDC28A-203ENST00000617445 ZNF500O60304 480 aaPredicted RBP17.25■□□□□ 0.35
CCDC28A-203ENST00000617445 SOX30O94993 753 aa17.25■□□□□ 0.35
CCDC28A-203ENST00000617445 UTS2O95399 124 aa17.25■□□□□ 0.35
CCDC28A-203ENST00000617445 CHRNGP07510 517 aa17.25■□□□□ 0.35
CCDC28A-203ENST00000617445 NGFRP08138 427 aa17.25■□□□□ 0.35
CCDC28A-203ENST00000617445 BCKDHAP12694 445 aa17.25■□□□□ 0.35
CCDC28A-203ENST00000617445 HPCAL1P37235 193 aa17.25■□□□□ 0.35
CCDC28A-203ENST00000617445 PCYT1AP49585 367 aa17.25■□□□□ 0.35
CCDC28A-203ENST00000617445 AGFG1P52594 562 aaKnown RBP17.25■□□□□ 0.35
CCDC28A-203ENST00000617445 DIO3P55073 304 aa17.25■□□□□ 0.35
CCDC28A-203ENST00000617445 GALNTL6Q49A17 601 aa17.25■□□□□ 0.35
CCDC28A-203ENST00000617445 ZNF385BQ569K4 471 aa17.25■□□□□ 0.35
CCDC28A-203ENST00000617445 ANKRD26P1Q6NSI1 321 aa17.25■□□□□ 0.35
CCDC28A-203ENST00000617445 OR6Y1Q8NGX8 325 aa17.25■□□□□ 0.35
CCDC28A-203ENST00000617445 AENQ8WTP8 325 aaKnown RBP17.25■□□□□ 0.35
CCDC28A-203ENST00000617445 CAVIN3Q969G5 261 aa17.25■□□□□ 0.35
CCDC28A-203ENST00000617445 INTS12Q96CB8 462 aaKnown RBP17.25■□□□□ 0.35
CCDC28A-203ENST00000617445 MS4A4EQ96PG1 132 aa17.25■□□□□ 0.35
CCDC28A-203ENST00000617445 TMEM109Q9BVC6 243 aa17.25■□□□□ 0.35
CCDC28A-203ENST00000617445 EQTNQ9NQ60 294 aa17.25■□□□□ 0.35
CCDC28A-203ENST00000617445 MED11Q9P086 117 aa17.25■□□□□ 0.35
CCDC28A-203ENST00000617445 SLC17A7Q9P2U7 560 aa17.25■□□□□ 0.35
CCDC28A-203ENST00000617445 BAIAP2L1Q9UHR4 511 aa17.25■□□□□ 0.35
CCDC28A-203ENST00000617445 ATP6V1HQ9UI12 483 aa17.25■□□□□ 0.35
CCDC28A-203ENST00000617445 AKAP9Q99996 3911 aa17.25■□□□□ 0.35
CCDC28A-203ENST00000617445 NUP214P35658 2090 aaPredicted RBP17.25■□□□□ 0.35
CCDC28A-203ENST00000617445 B4DXG7 233 aa17.24■□□□□ 0.35
CCDC28A-203ENST00000617445 PIP5K1BO14986 540 aa17.24■□□□□ 0.35
CCDC28A-203ENST00000617445 SPAG7O75391 227 aa17.24■□□□□ 0.35
CCDC28A-203ENST00000617445 LYPLA1O75608 230 aaPredicted RBP17.24■□□□□ 0.35
CCDC28A-203ENST00000617445 HSPA4LO95757 839 aa17.24■□□□□ 0.35
CCDC28A-203ENST00000617445 RFX3P48380 749 aa17.24■□□□□ 0.35
CCDC28A-203ENST00000617445 PRKAG1P54619 331 aa17.24■□□□□ 0.35
CCDC28A-203ENST00000617445 FOXF2Q12947 444 aa17.24■□□□□ 0.35
CCDC28A-203ENST00000617445 SNTB1Q13884 538 aaKnown RBP17.24■□□□□ 0.35
CCDC28A-203ENST00000617445 ATP6AP1LQ52LC2 224 aa17.24■□□□□ 0.35
CCDC28A-203ENST00000617445 RAET1LQ5VY80 246 aa17.24■□□□□ 0.35
CCDC28A-203ENST00000617445 MARCH3Q86UD3 253 aa17.24■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 133.8 ms