RNA–Protein interactions for RNA: ENST00000476391.5

HDAC1-206, Transcript of histone deacetylase 1, humanhuman

TSL 1 (best)

Gene HDAC1, Length 2,409 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-206ENST00000476391 OPN4Q9UHM6 478 aa13□□□□□ -0.33
HDAC1-206ENST00000476391 RUVBL1Q9Y265 456 aaKnown RBP13□□□□□ -0.33
HDAC1-206ENST00000476391 RNASET2O00584 256 aaKnown RBP13□□□□□ -0.33
HDAC1-206ENST00000476391 GP1BAP07359 652 aa13□□□□□ -0.33
HDAC1-206ENST00000476391 LAG3P18627 525 aa13□□□□□ -0.33
HDAC1-206ENST00000476391 DDX6P26196 483 aaKnown RBP eCLIP13□□□□□ -0.33
HDAC1-206ENST00000476391 CAPZA1P52907 286 aa13□□□□□ -0.33
HDAC1-206ENST00000476391 SIM1P81133 766 aaPredicted RBP13□□□□□ -0.33
HDAC1-206ENST00000476391 CDK5Q00535 292 aa13□□□□□ -0.33
HDAC1-206ENST00000476391 RING1Q06587 406 aa13□□□□□ -0.33
HDAC1-206ENST00000476391 ARHGEF7Q14155 803 aa13□□□□□ -0.33
HDAC1-206ENST00000476391 GUCA2BQ16661 112 aa13□□□□□ -0.33
HDAC1-206ENST00000476391 FAM182BQ5T319 152 aa13□□□□□ -0.33
HDAC1-206ENST00000476391 FRG2Q64ET8 278 aa13□□□□□ -0.33
HDAC1-206ENST00000476391 TRIM40Q6P9F5 258 aa13□□□□□ -0.33
HDAC1-206ENST00000476391 ZNF683Q8IZ20 524 aa13□□□□□ -0.33
HDAC1-206ENST00000476391 GPC2Q8N158 579 aa13□□□□□ -0.33
HDAC1-206ENST00000476391 TBC1D19Q8N5T2 526 aa13□□□□□ -0.33
HDAC1-206ENST00000476391 RELL2Q8NC24 303 aaPredicted RBP13□□□□□ -0.33
HDAC1-206ENST00000476391 MTMR14Q8NCE2 650 aa13□□□□□ -0.33
HDAC1-206ENST00000476391 THAP6Q8TBB0 222 aa13□□□□□ -0.33
HDAC1-206ENST00000476391 FRG2BQ96QU4 278 aa13□□□□□ -0.33
HDAC1-206ENST00000476391 GMLQ99445 158 aa13□□□□□ -0.33
HDAC1-206ENST00000476391 PRMT8Q9NR22 394 aaPredicted RBP13□□□□□ -0.33
HDAC1-206ENST00000476391 TAS2R5Q9NYW4 299 aa13□□□□□ -0.33
HDAC1-206ENST00000476391 ZNF69Q9UC07 566 aa13□□□□□ -0.33
HDAC1-206ENST00000476391 ANGPT4Q9Y264 503 aa13□□□□□ -0.33
HDAC1-206ENST00000476391 RPH3AQ9Y2J0 694 aaPredicted RBP13□□□□□ -0.33
HDAC1-206ENST00000476391 BRWD3Q6RI45 1802 aa13□□□□□ -0.33
HDAC1-206ENST00000476391 MEX3AA1L020 520 aaKnown RBP12.99□□□□□ -0.33
HDAC1-206ENST00000476391 C5orf58C9J3I9 102 aa12.99□□□□□ -0.33
HDAC1-206ENST00000476391 IL5P05113 134 aa12.99□□□□□ -0.33
HDAC1-206ENST00000476391 ANXA5P08758 320 aa12.99□□□□□ -0.33
HDAC1-206ENST00000476391 RPA2P15927 270 aa12.99□□□□□ -0.33
HDAC1-206ENST00000476391 ASMTP46597 345 aa12.99□□□□□ -0.33
HDAC1-206ENST00000476391 E2F1Q01094 437 aa12.99□□□□□ -0.33
HDAC1-206ENST00000476391 BDH1Q02338 343 aa12.99□□□□□ -0.33
HDAC1-206ENST00000476391 SERINC3Q13530 473 aa12.99□□□□□ -0.33
HDAC1-206ENST00000476391 PTRHD1Q6GMV3 140 aaKnown RBP12.99□□□□□ -0.33
HDAC1-206ENST00000476391 FAM109BQ6ICB4 259 aaPredicted RBP12.99□□□□□ -0.33
HDAC1-206ENST00000476391 LRRC70Q7Z2Q7 622 aa12.99□□□□□ -0.33
HDAC1-206ENST00000476391 RNF113BQ8IZP6 322 aaKnown RBP12.99□□□□□ -0.33
HDAC1-206ENST00000476391 ZNF565Q8N9K5 539 aa12.99□□□□□ -0.33
HDAC1-206ENST00000476391 POGLUT1Q8NBL1 392 aa12.99□□□□□ -0.33
HDAC1-206ENST00000476391 GOT1L1Q8NHS2 421 aaPredicted RBP12.99□□□□□ -0.33
HDAC1-206ENST00000476391 RXFP4Q8TDU9 374 aa12.99□□□□□ -0.33
HDAC1-206ENST00000476391 SMIM4Q8WVI0 70 aa12.99□□□□□ -0.33
HDAC1-206ENST00000476391 ZFP3Q96NJ6 502 aa12.99□□□□□ -0.33
HDAC1-206ENST00000476391 MS4A4EQ96PG1 132 aa12.99□□□□□ -0.33
HDAC1-206ENST00000476391 OR10A4Q9H209 315 aa12.99□□□□□ -0.33
HDAC1-206ENST00000476391 MYOZ2Q9NPC6 264 aa12.99□□□□□ -0.33
HDAC1-206ENST00000476391 STARD7Q9NQZ5 370 aa12.99□□□□□ -0.33
HDAC1-206ENST00000476391 BACE2Q9Y5Z0 518 aa12.99□□□□□ -0.33
HDAC1-206ENST00000476391 NINQ8N4C6 2090 aa12.99□□□□□ -0.33
HDAC1-206ENST00000476391 TSPAN3O60637 253 aa12.99□□□□□ -0.33
HDAC1-206ENST00000476391 H1F0P07305 194 aaKnown RBP12.99□□□□□ -0.33
HDAC1-206ENST00000476391 SDHBP21912 280 aa12.99□□□□□ -0.33
HDAC1-206ENST00000476391 RNF144AP50876 292 aaPredicted RBP12.99□□□□□ -0.33
HDAC1-206ENST00000476391 CCR9P51686 369 aa12.99□□□□□ -0.33
HDAC1-206ENST00000476391 DLX5P56178 289 aa12.99□□□□□ -0.33
HDAC1-206ENST00000476391 KRT33BQ14525 404 aa12.99□□□□□ -0.33
HDAC1-206ENST00000476391 ARSIQ5FYB1 569 aa12.99□□□□□ -0.33
HDAC1-206ENST00000476391 RNASE12Q5GAN4 147 aaKnown RBP12.99□□□□□ -0.33
HDAC1-206ENST00000476391 RTP2Q5QGT7 225 aa12.99□□□□□ -0.33
HDAC1-206ENST00000476391 SLC6A19Q695T7 634 aa12.99□□□□□ -0.33
HDAC1-206ENST00000476391 ACSM5Q6NUN0 579 aa12.99□□□□□ -0.33
HDAC1-206ENST00000476391 FAM122BQ7Z309 247 aa12.99□□□□□ -0.33
HDAC1-206ENST00000476391 ZFP82Q8N141 532 aa12.99□□□□□ -0.33
HDAC1-206ENST00000476391 TMEM86AQ8N2M4 240 aa12.99□□□□□ -0.33
HDAC1-206ENST00000476391 APOBEC4Q8WW27 367 aaKnown RBP12.99□□□□□ -0.33
HDAC1-206ENST00000476391 GTF3AQ92664 365 aaKnown RBP12.99□□□□□ -0.33
HDAC1-206ENST00000476391 VOPP1Q96AW1 172 aa12.99□□□□□ -0.33
HDAC1-206ENST00000476391 GSDMCQ9BYG8 508 aa12.99□□□□□ -0.33
HDAC1-206ENST00000476391 TM6SF2Q9BZW4 377 aa12.99□□□□□ -0.33
HDAC1-206ENST00000476391 CTPS2Q9NRF8 586 aa12.99□□□□□ -0.33
HDAC1-206ENST00000476391 UFSP2Q9NUQ7 469 aa12.99□□□□□ -0.33
HDAC1-206ENST00000476391 KLK14Q9P0G3 267 aa12.99□□□□□ -0.33
HDAC1-206ENST00000476391 GULP1Q9UBP9 304 aa12.99□□□□□ -0.33
HDAC1-206ENST00000476391 CAMK2AQ9UQM7 478 aa12.99□□□□□ -0.33
HDAC1-206ENST00000476391 GREB1Q4ZG55 1949 aa12.99□□□□□ -0.33
HDAC1-206ENST00000476391 FXYD6-FXYD2A0A087WZ82 144 aa12.98□□□□□ -0.33
HDAC1-206ENST00000476391 SLC9B1P1A6NJY1 282 aa12.98□□□□□ -0.33
HDAC1-206ENST00000476391 ARPC1BO15143 372 aaKnown RBP12.98□□□□□ -0.33
HDAC1-206ENST00000476391 RAMP2O60895 175 aa12.98□□□□□ -0.33
HDAC1-206ENST00000476391 IGF2P01344 180 aa12.98□□□□□ -0.33
HDAC1-206ENST00000476391 MGMTP16455 207 aa12.98□□□□□ -0.33
HDAC1-206ENST00000476391 GDNFP39905 211 aa12.98□□□□□ -0.33
HDAC1-206ENST00000476391 MAPK9P45984 424 aa12.98□□□□□ -0.33
HDAC1-206ENST00000476391 SMIM11AP58511 58 aa12.98□□□□□ -0.33
HDAC1-206ENST00000476391 RELQ04864 619 aaPredicted RBP12.98□□□□□ -0.33
HDAC1-206ENST00000476391 FAM76BQ5HYJ3 339 aa12.98□□□□□ -0.33
HDAC1-206ENST00000476391 MANEAQ5SRI9 462 aa12.98□□□□□ -0.33
HDAC1-206ENST00000476391 C10orf91Q5T1B1 145 aa12.98□□□□□ -0.33
HDAC1-206ENST00000476391 SFRP4Q6FHJ7 346 aaPredicted RBP12.98□□□□□ -0.33
HDAC1-206ENST00000476391 CERS6Q6ZMG9 384 aa12.98□□□□□ -0.33
HDAC1-206ENST00000476391 GPR156Q8NFN8 814 aa12.98□□□□□ -0.33
HDAC1-206ENST00000476391 PHOSPHO1Q8TCT1 267 aa12.98□□□□□ -0.33
HDAC1-206ENST00000476391 THAP4Q8WY91 577 aa12.98□□□□□ -0.33
HDAC1-206ENST00000476391 FXYD6Q9H0Q3 95 aa12.98□□□□□ -0.33
HDAC1-206ENST00000476391 SLC38A1Q9H2H9 487 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms