RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 TUBD1Q9UJT1 453 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 AHDC1Q5TGY3 1603 aaPredicted RBP3.85□□□□□ -1.79
USH2A-202ENST00000366942 H7C2Y5 167 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 XRCC2O43543 280 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 ZNF780AO75290 641 aaPredicted RBP3.85□□□□□ -1.79
USH2A-202ENST00000366942 MT-CO1P00395 513 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 ETFAP13804 333 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 PRPH2P23942 346 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 STARD6P59095 220 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 NECTIN1Q15223 517 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 IRF4Q15306 451 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 PTPN20Q4JDL3 420 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 RAB12Q6IQ22 244 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 PNCKQ6P2M8 343 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 STX12Q86Y82 276 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 MREGQ8N565 214 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 SIRT6Q8N6T7 355 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 SPATA4Q8NEY3 305 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 RPL3LQ92901 407 aaKnown RBP3.85□□□□□ -1.79
USH2A-202ENST00000366942 TAAR8Q969N4 342 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 KCTD14Q9BQ13 255 aaPredicted RBP3.85□□□□□ -1.79
USH2A-202ENST00000366942 BHLHE41Q9C0J9 482 aaPredicted RBP3.85□□□□□ -1.79
USH2A-202ENST00000366942 LPAR2Q9HBW0 351 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 PRSS16Q9NQE7 514 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 TBC1D23Q9NUY8 699 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 TAS2R1Q9NYW7 299 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 ASB1Q9Y576 335 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 NEURL4Q96JN8 1562 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 SLIT3O75094 1523 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 MBLAC1A4D2B0 266 aaPredicted RBP3.85□□□□□ -1.79
USH2A-202ENST00000366942 GABARAPH6UMI1 98 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 TXNL1O43396 289 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 FMO6PO60774 539 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 SORBS2O94875 1100 aaKnown RBP3.85□□□□□ -1.79
USH2A-202ENST00000366942 GABARAPO95166 117 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 CYC1P08574 325 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 PGAM2P15259 253 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 GGT1P19440 569 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 DRD3P35462 400 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 MAGEA4P43358 317 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 SLC1A6P48664 564 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 OR1D5P58170 312 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 ADAM8P78325 824 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 HMGCS1Q01581 520 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 DHODHQ02127 395 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 ST3GAL3Q11203 375 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 KCNAB1Q14722 419 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 LRRC36Q1X8D7 754 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 FAM166AQ6J272 317 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 ZNF343Q6P1L6 599 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 PLEKHG7Q6ZR37 379 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 ADCK1Q86TW2 530 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 CUZD1Q86UP6 607 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 ZFAND4Q86XD8 727 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 SPPL2CQ8IUH8 684 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 VSTM4Q8IW00 320 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 SGPP2Q8IWX5 399 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 FAM185AQ8N0U4 392 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 ZNF567Q8N184 647 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 OR13H1Q8NG92 308 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 GPR150Q8NGU9 434 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 NMD3Q96D46 503 aaKnown RBP3.85□□□□□ -1.79
USH2A-202ENST00000366942 WBP1Q96G27 269 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 TSGA13Q96PP4 275 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 MND1Q9BWT6 205 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 C6orf106Q9H6K1 298 aaPredicted RBP3.85□□□□□ -1.79
USH2A-202ENST00000366942 ZNF442Q9H7R0 627 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 TCF7L1Q9HCS4 588 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 GIMAP2Q9UG22 337 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 A4GNTQ9UNA3 340 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 PLEKHA6Q9Y2H5 1048 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 POLDIP2Q9Y2S7 368 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 TPRKBQ9Y3C4 175 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 PCDHGA7Q9Y5G6 932 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 ACTL7AQ9Y615 435 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 ZNF318Q5VUA4 2279 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 LRP5LA4QPB2 252 aa3.84□□□□□ -1.79
USH2A-202ENST00000366942 FOXN3O00409 490 aaPredicted RBP3.84□□□□□ -1.79
USH2A-202ENST00000366942 B4GALT3O60512 393 aa3.84□□□□□ -1.79
USH2A-202ENST00000366942 CDC14BO60729 498 aa3.84□□□□□ -1.79
USH2A-202ENST00000366942 SEC24AO95486 1093 aa3.84□□□□□ -1.79
USH2A-202ENST00000366942 KNG1P01042 644 aa3.84□□□□□ -1.79
USH2A-202ENST00000366942 BPGMP07738 259 aa3.84□□□□□ -1.79
USH2A-202ENST00000366942 NME1P15531 152 aaKnown RBP3.84□□□□□ -1.79
USH2A-202ENST00000366942 ABCD3P28288 659 aa3.84□□□□□ -1.79
USH2A-202ENST00000366942 HTR5AP47898 357 aa3.84□□□□□ -1.79
USH2A-202ENST00000366942 ASCL1P50553 236 aa3.84□□□□□ -1.79
USH2A-202ENST00000366942 NAGLUP54802 743 aa3.84□□□□□ -1.79
USH2A-202ENST00000366942 PRRX1P54821 245 aa3.84□□□□□ -1.79
USH2A-202ENST00000366942 CORO7P57737 925 aa3.84□□□□□ -1.79
USH2A-202ENST00000366942 C1orf146Q5VVC0 180 aa3.84□□□□□ -1.79
USH2A-202ENST00000366942 TMEM184AQ6ZMB5 413 aa3.84□□□□□ -1.79
USH2A-202ENST00000366942 CDRT4Q8N9R6 151 aa3.84□□□□□ -1.79
USH2A-202ENST00000366942 OR5R1Q8NH85 324 aa3.84□□□□□ -1.79
USH2A-202ENST00000366942 OTUD7AQ8TE49 926 aaPredicted RBP3.84□□□□□ -1.79
USH2A-202ENST00000366942 UTP4Q969X6 686 aaKnown RBP3.84□□□□□ -1.79
USH2A-202ENST00000366942 MRGPRX3Q96LB0 322 aa3.84□□□□□ -1.79
USH2A-202ENST00000366942 CNTNAP3BQ96NU0 1288 aa3.84□□□□□ -1.79
USH2A-202ENST00000366942 ZIC5Q96T25 663 aa3.84□□□□□ -1.79
USH2A-202ENST00000366942 SMAD5Q99717 465 aaKnown RBP3.84□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 1716.9 ms