RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 METTL2BQ6P1Q9 378 aaKnown RBP8.12□□□□□ -1.11
USP40-203ENST00000427112 TRAM1L1Q8N609 369 aa8.12□□□□□ -1.11
USP40-203ENST00000427112 METTL27Q8N6F8 245 aaPredicted RBP8.12□□□□□ -1.11
USP40-203ENST00000427112 TMEM99Q8N816 258 aa8.12□□□□□ -1.11
USP40-203ENST00000427112 OR8J1Q8NGP2 316 aa8.12□□□□□ -1.11
USP40-203ENST00000427112 PFN4Q8NHR9 129 aa8.12□□□□□ -1.11
USP40-203ENST00000427112 FAM174AQ8TBP5 190 aa8.12□□□□□ -1.11
USP40-203ENST00000427112 CREB3L4Q8TEY5 395 aa8.12□□□□□ -1.11
USP40-203ENST00000427112 C2orf15Q8WU43 125 aaKnown RBP8.12□□□□□ -1.11
USP40-203ENST00000427112 CRELD1Q96HD1 420 aa8.12□□□□□ -1.11
USP40-203ENST00000427112 MS4A3Q96HJ5 214 aa8.12□□□□□ -1.11
USP40-203ENST00000427112 ZNF607Q96SK3 696 aa8.12□□□□□ -1.11
USP40-203ENST00000427112 FKRPQ9H9S5 495 aa8.12□□□□□ -1.11
USP40-203ENST00000427112 EVA1BQ9NVM1 165 aa8.12□□□□□ -1.11
USP40-203ENST00000427112 MRPL39Q9NYK5 338 aaKnown RBP8.12□□□□□ -1.11
USP40-203ENST00000427112 ATPIF1Q9UII2 106 aa8.12□□□□□ -1.11
USP40-203ENST00000427112 A4GNTQ9UNA3 340 aa8.12□□□□□ -1.11
USP40-203ENST00000427112 FLVCR2Q9UPI3 526 aa8.12□□□□□ -1.11
USP40-203ENST00000427112 CORO2BQ9UQ03 480 aa8.12□□□□□ -1.11
USP40-203ENST00000427112 BACE2Q9Y5Z0 518 aa8.12□□□□□ -1.11
USP40-203ENST00000427112 IGLV3-16A0A075B6K0 115 aa8.12□□□□□ -1.11
USP40-203ENST00000427112 MEIS3P1A6NDR6 274 aa8.12□□□□□ -1.11
USP40-203ENST00000427112 LRRC72A6NJI9 287 aa8.12□□□□□ -1.11
USP40-203ENST00000427112 C4orf47A7E2U8 309 aa8.12□□□□□ -1.11
USP40-203ENST00000427112 ZNF670-ZNF695F2Z2N8 137 aa8.12□□□□□ -1.11
USP40-203ENST00000427112 OR2B3O76000 313 aa8.12□□□□□ -1.11
USP40-203ENST00000427112 RAB36O95755 333 aa8.12□□□□□ -1.11
USP40-203ENST00000427112 SLC35G4P0C7Q5 338 aa8.12□□□□□ -1.11
USP40-203ENST00000427112 ELK1P19419 428 aa8.12□□□□□ -1.11
USP40-203ENST00000427112 PRLHRP49683 370 aa8.12□□□□□ -1.11
USP40-203ENST00000427112 VSX2P58304 361 aaPredicted RBP8.12□□□□□ -1.11
USP40-203ENST00000427112 KCNAB1Q14722 419 aa8.12□□□□□ -1.11
USP40-203ENST00000427112 DHCR24Q15392 516 aa8.12□□□□□ -1.11
USP40-203ENST00000427112 FCN2Q15485 313 aa8.12□□□□□ -1.11
USP40-203ENST00000427112 FBXO43Q4G163 708 aa8.12□□□□□ -1.11
USP40-203ENST00000427112 CDC73Q6P1J9 531 aa8.12□□□□□ -1.11
USP40-203ENST00000427112 KRT78Q8N1N4 520 aa8.12□□□□□ -1.11
USP40-203ENST00000427112 RFLNBQ8N5W9 214 aa8.12□□□□□ -1.11
USP40-203ENST00000427112 NANOGP1Q8N7R0 232 aa8.12□□□□□ -1.11
USP40-203ENST00000427112 BOLLQ8N9W6 283 aaKnown RBP8.12□□□□□ -1.11
USP40-203ENST00000427112 MINDY2Q8NBR6 621 aa8.12□□□□□ -1.11
USP40-203ENST00000427112 UFD1Q92890 307 aa8.12□□□□□ -1.11
USP40-203ENST00000427112 CAPNS2Q96L46 248 aa8.12□□□□□ -1.11
USP40-203ENST00000427112 EFCAB11Q9BUY7 163 aa8.12□□□□□ -1.11
USP40-203ENST00000427112 DPCDQ9BVM2 203 aaPredicted RBP8.12□□□□□ -1.11
USP40-203ENST00000427112 SLC25A18Q9H1K4 315 aa8.12□□□□□ -1.11
USP40-203ENST00000427112 MYEF2Q9P2K5 600 aaKnown RBP8.12□□□□□ -1.11
USP40-203ENST00000427112 SEC14L4Q9UDX3 406 aa8.12□□□□□ -1.11
USP40-203ENST00000427112 SLC23A1Q9UHI7 598 aa8.12□□□□□ -1.11
USP40-203ENST00000427112 ANAPC1Q9H1A4 1944 aa8.12□□□□□ -1.11
USP40-203ENST00000427112 A0A1W2PP55 124 aa8.12□□□□□ -1.11
USP40-203ENST00000427112 GRXCR1A8MXD5 290 aa8.12□□□□□ -1.11
USP40-203ENST00000427112 CDC42EP2O14613 210 aa8.12□□□□□ -1.11
USP40-203ENST00000427112 PI15O43692 258 aa8.12□□□□□ -1.11
USP40-203ENST00000427112 RASGRP1O95267 797 aa8.12□□□□□ -1.11
USP40-203ENST00000427112 MT-ND4P03905 459 aa8.12□□□□□ -1.11
USP40-203ENST00000427112 TP53P04637 393 aaPredicted RBP8.12□□□□□ -1.11
USP40-203ENST00000427112 CTSAP10619 480 aa8.12□□□□□ -1.11
USP40-203ENST00000427112 SNRPBP14678 240 aaKnown RBP8.12□□□□□ -1.11
USP40-203ENST00000427112 PTX3P26022 381 aaPredicted RBP8.12□□□□□ -1.11
USP40-203ENST00000427112 CTNNB1P35222 781 aa8.12□□□□□ -1.11
USP40-203ENST00000427112 E2F1Q01094 437 aa8.12□□□□□ -1.11
USP40-203ENST00000427112 CDC20Q12834 499 aa8.12□□□□□ -1.11
USP40-203ENST00000427112 FGFBP1Q14512 234 aa8.12□□□□□ -1.11
USP40-203ENST00000427112 NDUFAF6Q330K2 333 aa8.12□□□□□ -1.11
USP40-203ENST00000427112 TPGS2Q68CL5 300 aa8.12□□□□□ -1.11
USP40-203ENST00000427112 TCEAL8Q8IYN2 117 aa8.12□□□□□ -1.11
USP40-203ENST00000427112 FBXL6Q8N531 539 aa8.12□□□□□ -1.11
USP40-203ENST00000427112 OR4D9Q8NGE8 314 aa8.12□□□□□ -1.11
USP40-203ENST00000427112 DNAJB8Q8NHS0 232 aa8.12□□□□□ -1.11
USP40-203ENST00000427112 ZNF296Q8WUU4 475 aaPredicted RBP8.12□□□□□ -1.11
USP40-203ENST00000427112 ABCG5Q9H222 651 aa8.12□□□□□ -1.11
USP40-203ENST00000427112 THSD1Q9NS62 852 aa8.12□□□□□ -1.11
USP40-203ENST00000427112 MAU2Q9Y6X3 613 aa8.12□□□□□ -1.11
USP40-203ENST00000427112 INMT-MINDY4F8WBC2 141 aa8.11□□□□□ -1.11
USP40-203ENST00000427112 H0Y8X5 98 aa8.11□□□□□ -1.11
USP40-203ENST00000427112 FABP7O15540 132 aa8.11□□□□□ -1.11
USP40-203ENST00000427112 RPP14O95059 124 aaKnown RBP8.11□□□□□ -1.11
USP40-203ENST00000427112 CPMP14384 443 aa8.11□□□□□ -1.11
USP40-203ENST00000427112 DDCP20711 480 aa8.11□□□□□ -1.11
USP40-203ENST00000427112 MMP12P39900 470 aa8.11□□□□□ -1.11
USP40-203ENST00000427112 GCGRP47871 477 aa8.11□□□□□ -1.11
USP40-203ENST00000427112 PDX1P52945 283 aa8.11□□□□□ -1.11
USP40-203ENST00000427112 WNT4P56705 351 aa8.11□□□□□ -1.11
USP40-203ENST00000427112 GNG2P59768 71 aa8.11□□□□□ -1.11
USP40-203ENST00000427112 DCDC1P59894 354 aa8.11□□□□□ -1.11
USP40-203ENST00000427112 UBE2MP61081 183 aaKnown RBP8.11□□□□□ -1.11
USP40-203ENST00000427112 EEF1A2Q05639 463 aaKnown RBP8.11□□□□□ -1.11
USP40-203ENST00000427112 SLC25A35Q3KQZ1 300 aa8.11□□□□□ -1.11
USP40-203ENST00000427112 TP53I3Q53FA7 332 aa8.11□□□□□ -1.11
USP40-203ENST00000427112 CHMP1BQ7LBR1 199 aa8.11□□□□□ -1.11
USP40-203ENST00000427112 TRIM69Q86WT6 500 aa8.11□□□□□ -1.11
USP40-203ENST00000427112 SIRT6Q8N6T7 355 aa8.11□□□□□ -1.11
USP40-203ENST00000427112 LINC01555Q8NAE3 123 aa8.11□□□□□ -1.11
USP40-203ENST00000427112 OR4Q3Q8NH05 313 aa8.11□□□□□ -1.11
USP40-203ENST00000427112 CCL4L1Q8NHW4 92 aa8.11□□□□□ -1.11
USP40-203ENST00000427112 CXorf40AQ8TE69 158 aa8.11□□□□□ -1.11
USP40-203ENST00000427112 CDS1Q92903 461 aa8.11□□□□□ -1.11
USP40-203ENST00000427112 ZNF689Q96CS4 500 aaPredicted RBP8.11□□□□□ -1.11
USP40-203ENST00000427112 RSPRY1Q96DX4 576 aa8.11□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms