RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 SSTR4P31391 388 aa17.35■□□□□ 0.37
CLN3-206ENST00000360019 GALNSP34059 522 aa17.35■□□□□ 0.37
CLN3-206ENST00000360019 ANXA11P50995 505 aaKnown RBP17.35■□□□□ 0.37
CLN3-206ENST00000360019 MAPK10P53779 464 aa17.35■□□□□ 0.37
CLN3-206ENST00000360019 INTS11Q5TA45 600 aaKnown RBP17.35■□□□□ 0.37
CLN3-206ENST00000360019 REEP3Q6NUK4 255 aa17.35■□□□□ 0.37
CLN3-206ENST00000360019 CBLL1Q75N03 491 aa17.35■□□□□ 0.37
CLN3-206ENST00000360019 OVCH1Q7RTY7 1134 aa17.35■□□□□ 0.37
CLN3-206ENST00000360019 ANKFN1Q8N957 763 aa17.35■□□□□ 0.37
CLN3-206ENST00000360019 PTPMT1Q8WUK0 201 aaPredicted RBP17.35■□□□□ 0.37
CLN3-206ENST00000360019 PELOQ9BRX2 385 aaKnown RBP17.35■□□□□ 0.37
CLN3-206ENST00000360019 IFT80Q9P2H3 777 aaPredicted RBP17.35■□□□□ 0.37
CLN3-206ENST00000360019 PRDM4Q9UKN5 801 aa17.35■□□□□ 0.37
CLN3-206ENST00000360019 SAMD4AQ9UPU9 718 aaKnown RBP17.35■□□□□ 0.37
CLN3-206ENST00000360019 A0A1W2PNU3 283 aaPredicted RBP17.35■□□□□ 0.37
CLN3-206ENST00000360019 TPST1O60507 370 aa17.35■□□□□ 0.37
CLN3-206ENST00000360019 CNOT3O75175 753 aaKnown RBP17.35■□□□□ 0.37
CLN3-206ENST00000360019 ZNF682O95780 498 aa17.35■□□□□ 0.37
CLN3-206ENST00000360019 ACP2P11117 423 aa17.35■□□□□ 0.37
CLN3-206ENST00000360019 CLCN2P51788 898 aa17.35■□□□□ 0.37
CLN3-206ENST00000360019 TXNL4AP83876 142 aaKnown RBP17.35■□□□□ 0.37
CLN3-206ENST00000360019 OCA2Q04671 838 aa17.35■□□□□ 0.37
CLN3-206ENST00000360019 ZNF267Q14586 743 aaPredicted RBP17.35■□□□□ 0.37
CLN3-206ENST00000360019 HES3Q5TGS1 186 aa17.35■□□□□ 0.37
CLN3-206ENST00000360019 ASCL5Q7RTU5 278 aa17.35■□□□□ 0.37
CLN3-206ENST00000360019 SLC30A8Q8IWU4 369 aa17.35■□□□□ 0.37
CLN3-206ENST00000360019 ADAMTS15Q8TE58 950 aa17.35■□□□□ 0.37
CLN3-206ENST00000360019 LRTOMTQ8WZ04 291 aa17.35■□□□□ 0.37
CLN3-206ENST00000360019 TAMM41Q96BW9 452 aa17.35■□□□□ 0.37
CLN3-206ENST00000360019 SLC35A4Q96G79 324 aa17.35■□□□□ 0.37
CLN3-206ENST00000360019 CNPPD1Q9BV87 410 aa17.35■□□□□ 0.37
CLN3-206ENST00000360019 ULBP3Q9BZM4 244 aa17.35■□□□□ 0.37
CLN3-206ENST00000360019 RUBCNLQ9H714 662 aa17.35■□□□□ 0.37
CLN3-206ENST00000360019 PNO1Q9NRX1 252 aaKnown RBP17.35■□□□□ 0.37
CLN3-206ENST00000360019 STOML1Q9UBI4 398 aa17.35■□□□□ 0.37
CLN3-206ENST00000360019 KNTC1P50748 2209 aa17.34■□□□□ 0.37
CLN3-206ENST00000360019 VSTM2BA6NLU5 285 aa17.34■□□□□ 0.37
CLN3-206ENST00000360019 C17orf105B2RV13 164 aa17.34■□□□□ 0.37
CLN3-206ENST00000360019 C5orf58C9J3I9 102 aa17.34■□□□□ 0.37
CLN3-206ENST00000360019 SLC28A2O43868 658 aa17.34■□□□□ 0.37
CLN3-206ENST00000360019 DKK1O94907 266 aa17.34■□□□□ 0.37
CLN3-206ENST00000360019 PGM3O95394 542 aa17.34■□□□□ 0.37
CLN3-206ENST00000360019 MT-ND1P03886 318 aa17.34■□□□□ 0.37
CLN3-206ENST00000360019 OPN1SWP03999 348 aa17.34■□□□□ 0.37
CLN3-206ENST00000360019 PTDSS1P48651 473 aaKnown RBP17.34■□□□□ 0.37
CLN3-206ENST00000360019 PGDP52209 483 aa17.34■□□□□ 0.37
CLN3-206ENST00000360019 FUT7Q11130 342 aa17.34■□□□□ 0.37
CLN3-206ENST00000360019 NSDHLQ15738 373 aa17.34■□□□□ 0.37
CLN3-206ENST00000360019 DUSP5Q16690 384 aa17.34■□□□□ 0.37
CLN3-206ENST00000360019 CRB2Q5IJ48 1285 aa17.34■□□□□ 0.37
CLN3-206ENST00000360019 EIF3MQ7L2H7 374 aaKnown RBP17.34■□□□□ 0.37
CLN3-206ENST00000360019 OLIG3Q7RTU3 272 aa17.34■□□□□ 0.37
CLN3-206ENST00000360019 PLPP5Q8NEB5 264 aa17.34■□□□□ 0.37
CLN3-206ENST00000360019 SLC9A6Q92581 669 aa17.34■□□□□ 0.37
CLN3-206ENST00000360019 PYURFQ96I23 114 aa17.34■□□□□ 0.37
CLN3-206ENST00000360019 RNF145Q96MT1 663 aa17.34■□□□□ 0.37
CLN3-206ENST00000360019 LRFN5Q96NI6 719 aa17.34■□□□□ 0.37
CLN3-206ENST00000360019 EFHD1Q9BUP0 239 aa17.34■□□□□ 0.37
CLN3-206ENST00000360019 UGT2B28Q9BY64 529 aa17.34■□□□□ 0.37
CLN3-206ENST00000360019 SOX17Q9H6I2 414 aaPredicted RBP17.34■□□□□ 0.37
CLN3-206ENST00000360019 C14orf105Q9NVL8 296 aa17.34■□□□□ 0.37
CLN3-206ENST00000360019 C6orf203Q9P0P8 240 aaPredicted RBP17.34■□□□□ 0.37
CLN3-206ENST00000360019 ERVK-19Q9WJR5 959 aa17.34■□□□□ 0.37
CLN3-206ENST00000360019 M0QX08 132 aa17.33■□□□□ 0.37
CLN3-206ENST00000360019 COQ9O75208 318 aa17.33■□□□□ 0.37
CLN3-206ENST00000360019 RAP2AP10114 183 aa17.33■□□□□ 0.37
CLN3-206ENST00000360019 NR2F1P10589 423 aa17.33■□□□□ 0.37
CLN3-206ENST00000360019 TNNI3P19429 210 aa17.33■□□□□ 0.37
CLN3-206ENST00000360019 MAP3K8P41279 467 aa17.33■□□□□ 0.37
CLN3-206ENST00000360019 EMDP50402 254 aa17.33■□□□□ 0.37
CLN3-206ENST00000360019 RAB15P59190 212 aa17.33■□□□□ 0.37
CLN3-206ENST00000360019 FAM98BQ52LJ0 330 aaKnown RBP17.33■□□□□ 0.37
CLN3-206ENST00000360019 CYBRD1Q53TN4 286 aa17.33■□□□□ 0.37
CLN3-206ENST00000360019 DCAF12Q5T6F0 453 aa17.33■□□□□ 0.37
CLN3-206ENST00000360019 HMBOX1Q6NT76 420 aa17.33■□□□□ 0.37
CLN3-206ENST00000360019 MRPL14Q6P1L8 145 aaKnown RBP17.33■□□□□ 0.37
CLN3-206ENST00000360019 VTCN1Q7Z7D3 282 aa17.33■□□□□ 0.37
CLN3-206ENST00000360019 TMEM102Q8N9M5 508 aaPredicted RBP17.33■□□□□ 0.37
CLN3-206ENST00000360019 CDS1Q92903 461 aa17.33■□□□□ 0.37
CLN3-206ENST00000360019 SLC47A1Q96FL8 570 aa17.33■□□□□ 0.37
CLN3-206ENST00000360019 DEPDC7Q96QD5 511 aa17.33■□□□□ 0.37
CLN3-206ENST00000360019 SPSB2Q99619 263 aa17.33■□□□□ 0.37
CLN3-206ENST00000360019 TREX2Q9BQ50 279 aaPredicted RBP17.33■□□□□ 0.37
CLN3-206ENST00000360019 CHID1Q9BWS9 393 aa17.33■□□□□ 0.37
CLN3-206ENST00000360019 SLC26A1Q9H2B4 701 aa17.33■□□□□ 0.37
CLN3-206ENST00000360019 PISDQ9UG56 409 aa17.33■□□□□ 0.37
CLN3-206ENST00000360019 RPS6KA6Q9UK32 745 aa17.33■□□□□ 0.37
CLN3-206ENST00000360019 FAM186AA6NE01 2351 aa17.33■□□□□ 0.36
CLN3-206ENST00000360019 TEX51A0A1B0GUA7 166 aa17.33■□□□□ 0.36
CLN3-206ENST00000360019 TMEM247A6NEH6 219 aa17.33■□□□□ 0.36
CLN3-206ENST00000360019 DUXAA6NLW8 204 aa17.33■□□□□ 0.36
CLN3-206ENST00000360019 A8MUA0 341 aa17.33■□□□□ 0.36
CLN3-206ENST00000360019 CLPSP04118 112 aa17.33■□□□□ 0.36
CLN3-206ENST00000360019 CHRM4P08173 479 aa17.33■□□□□ 0.36
CLN3-206ENST00000360019 LIMK1P53667 647 aa17.33■□□□□ 0.36
CLN3-206ENST00000360019 CHRNB3Q05901 458 aa17.33■□□□□ 0.36
CLN3-206ENST00000360019 MLIPQ5VWP3 458 aa17.33■□□□□ 0.36
CLN3-206ENST00000360019 HEPHL1Q6MZM0 1159 aa17.33■□□□□ 0.36
CLN3-206ENST00000360019 FAM199XQ6PEV8 388 aaPredicted RBP17.33■□□□□ 0.36
CLN3-206ENST00000360019 LRRC74BQ6ZQY2 392 aa17.33■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms