RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 OR4F6Q8NGB9 312 aa3.89□□□□□ -1.79
USH2A-202ENST00000366942 NSMCE2Q96MF7 247 aa3.89□□□□□ -1.79
USH2A-202ENST00000366942 SLC30A3Q99726 388 aa3.89□□□□□ -1.79
USH2A-202ENST00000366942 FAM173AQ9BQD7 235 aa3.89□□□□□ -1.79
USH2A-202ENST00000366942 CCSER2Q9H7U1 834 aa3.89□□□□□ -1.79
USH2A-202ENST00000366942 HIF1ANQ9NWT6 349 aa3.89□□□□□ -1.79
USH2A-202ENST00000366942 MEMO1Q9Y316 297 aa3.89□□□□□ -1.79
USH2A-202ENST00000366942 CAPN6Q9Y6Q1 641 aa3.89□□□□□ -1.79
USH2A-202ENST00000366942 LRRIQ1Q96JM4 1722 aa3.89□□□□□ -1.79
USH2A-202ENST00000366942 ZNF732B4DXR9 585 aa3.89□□□□□ -1.79
USH2A-202ENST00000366942 CLDN5O00501 218 aa3.89□□□□□ -1.79
USH2A-202ENST00000366942 KPNA4O00629 521 aaPredicted RBP3.89□□□□□ -1.79
USH2A-202ENST00000366942 WDR1O75083 606 aa3.89□□□□□ -1.79
USH2A-202ENST00000366942 PGM3O95394 542 aa3.89□□□□□ -1.79
USH2A-202ENST00000366942 ACSL3O95573 720 aa3.89□□□□□ -1.79
USH2A-202ENST00000366942 ENPP1P22413 925 aa3.89□□□□□ -1.79
USH2A-202ENST00000366942 CPT2P23786 658 aa3.89□□□□□ -1.79
USH2A-202ENST00000366942 PKNOX1P55347 436 aa3.89□□□□□ -1.79
USH2A-202ENST00000366942 RPS13P62277 151 aaKnown RBP3.89□□□□□ -1.79
USH2A-202ENST00000366942 DYRK1AQ13627 763 aa3.89□□□□□ -1.79
USH2A-202ENST00000366942 TGFBIQ15582 683 aa3.89□□□□□ -1.79
USH2A-202ENST00000366942 IL17AQ16552 155 aa3.89□□□□□ -1.79
USH2A-202ENST00000366942 GSG1Q2KHT4 349 aa3.89□□□□□ -1.79
USH2A-202ENST00000366942 LRRC10Q5BKY1 277 aa3.89□□□□□ -1.79
USH2A-202ENST00000366942 LIPKQ5VXJ0 399 aa3.89□□□□□ -1.79
USH2A-202ENST00000366942 ZNF589Q86UQ0 364 aaPredicted RBP3.89□□□□□ -1.79
USH2A-202ENST00000366942 THOC6Q86W42 341 aaKnown RBP3.89□□□□□ -1.79
USH2A-202ENST00000366942 ZNF280BQ86YH2 543 aa3.89□□□□□ -1.79
USH2A-202ENST00000366942 PLD3Q8IV08 490 aa3.89□□□□□ -1.79
USH2A-202ENST00000366942 SFTPA2Q8IWL1 248 aa3.89□□□□□ -1.79
USH2A-202ENST00000366942 SFTPA1Q8IWL2 248 aa3.89□□□□□ -1.79
USH2A-202ENST00000366942 ZNF595Q8IYB9 648 aa3.89□□□□□ -1.79
USH2A-202ENST00000366942 C1orf162Q8NEQ5 155 aaPredicted RBP3.89□□□□□ -1.79
USH2A-202ENST00000366942 ZPLD1Q8TCW7 415 aa3.89□□□□□ -1.79
USH2A-202ENST00000366942 CHPT1Q8WUD6 406 aa3.89□□□□□ -1.79
USH2A-202ENST00000366942 HOXB13Q92826 284 aaPredicted RBP3.89□□□□□ -1.79
USH2A-202ENST00000366942 RFKQ969G6 155 aa3.89□□□□□ -1.79
USH2A-202ENST00000366942 APOLD1Q96LR9 279 aa3.89□□□□□ -1.79
USH2A-202ENST00000366942 KLHL15Q96M94 604 aa3.89□□□□□ -1.79
USH2A-202ENST00000366942 RBM15Q96T37 977 aaKnown RBP eCLIP3.89□□□□□ -1.79
USH2A-202ENST00000366942 APOL4Q9BPW4 351 aa3.89□□□□□ -1.79
USH2A-202ENST00000366942 OSBPL11Q9BXB4 747 aa3.89□□□□□ -1.79
USH2A-202ENST00000366942 PRDM14Q9GZV8 571 aa3.89□□□□□ -1.79
USH2A-202ENST00000366942 HAO2Q9NYQ3 351 aa3.89□□□□□ -1.79
USH2A-202ENST00000366942 TESQ9UGI8 421 aaKnown RBP3.89□□□□□ -1.79
USH2A-202ENST00000366942 CLEC4AQ9UMR7 237 aa3.89□□□□□ -1.79
USH2A-202ENST00000366942 LIPT1Q9Y234 373 aa3.89□□□□□ -1.79
USH2A-202ENST00000366942 AMMECR1Q9Y4X0 333 aaPredicted RBP3.89□□□□□ -1.79
USH2A-202ENST00000366942 PRSS38A1L453 326 aa3.89□□□□□ -1.79
USH2A-202ENST00000366942 METTL21EPA6NDL7 271 aa3.89□□□□□ -1.79
USH2A-202ENST00000366942 C12orf71A8MTZ7 269 aa3.89□□□□□ -1.79
USH2A-202ENST00000366942 ZBTB42B2RXF5 422 aa3.89□□□□□ -1.79
USH2A-202ENST00000366942 APOC4-APOC2K7ER74 178 aa3.89□□□□□ -1.79
USH2A-202ENST00000366942 L7N2F9 121 aa3.89□□□□□ -1.79
USH2A-202ENST00000366942 GNB5O14775 395 aa3.89□□□□□ -1.79
USH2A-202ENST00000366942 TOX3O15405 576 aaPredicted RBP3.89□□□□□ -1.79
USH2A-202ENST00000366942 ATMINO43313 823 aaPredicted RBP3.89□□□□□ -1.79
USH2A-202ENST00000366942 COCHO43405 550 aa3.89□□□□□ -1.79
USH2A-202ENST00000366942 FTCDO95954 541 aa3.89□□□□□ -1.79
USH2A-202ENST00000366942 APOC2P02655 101 aa3.89□□□□□ -1.79
USH2A-202ENST00000366942 SERPINA7P05543 415 aa3.89□□□□□ -1.79
USH2A-202ENST00000366942 FCER2P06734 321 aa3.89□□□□□ -1.79
USH2A-202ENST00000366942 MAOAP21397 527 aa3.89□□□□□ -1.79
USH2A-202ENST00000366942 DPP4P27487 766 aa3.89□□□□□ -1.79
USH2A-202ENST00000366942 CSRP3P50461 194 aa3.89□□□□□ -1.79
USH2A-202ENST00000366942 VAMP2P63027 116 aa3.89□□□□□ -1.79
USH2A-202ENST00000366942 EPS8Q12929 822 aa3.89□□□□□ -1.79
USH2A-202ENST00000366942 CYP1B1Q16678 543 aa3.89□□□□□ -1.79
USH2A-202ENST00000366942 SPIN4Q56A73 249 aa3.89□□□□□ -1.79
USH2A-202ENST00000366942 BBS12Q6ZW61 710 aa3.89□□□□□ -1.79
USH2A-202ENST00000366942 TAC4Q86UU9 113 aa3.89□□□□□ -1.79
USH2A-202ENST00000366942 XYLT1Q86Y38 959 aa3.89□□□□□ -1.79
USH2A-202ENST00000366942 SULF2Q8IWU5 870 aa3.89□□□□□ -1.79
USH2A-202ENST00000366942 OR4A15Q8NGL6 344 aa3.89□□□□□ -1.79
USH2A-202ENST00000366942 LRRN4Q8WUT4 740 aa3.89□□□□□ -1.79
USH2A-202ENST00000366942 GAL3ST3Q96A11 431 aa3.89□□□□□ -1.79
USH2A-202ENST00000366942 C1QTNF3Q9BXJ4 246 aa3.89□□□□□ -1.79
USH2A-202ENST00000366942 DUSP15Q9H1R2 295 aaPredicted RBP3.89□□□□□ -1.79
USH2A-202ENST00000366942 KAT8Q9H7Z6 458 aaKnown RBP3.89□□□□□ -1.79
USH2A-202ENST00000366942 MAGEE1Q9HCI5 957 aa3.89□□□□□ -1.79
USH2A-202ENST00000366942 MED4Q9NPJ6 270 aa3.89□□□□□ -1.79
USH2A-202ENST00000366942 TMEM181Q9P2C4 612 aa3.89□□□□□ -1.79
USH2A-202ENST00000366942 CYTH4Q9UIA0 394 aa3.89□□□□□ -1.79
USH2A-202ENST00000366942 TRIM43BA6NCK2 446 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 SLC22A20A6NK97 555 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 CHST10O43529 356 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 DEAF1O75398 565 aaPredicted RBP3.88□□□□□ -1.79
USH2A-202ENST00000366942 BEST1O76090 585 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 WISP1O95388 367 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 CHGBP05060 677 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 PGRP06401 933 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 YES1P07947 543 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 TMIGD3P0DMS9 266 aaPredicted RBP3.88□□□□□ -1.79
USH2A-202ENST00000366942 OR5H8P0DN80 308 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 NAGAP17050 411 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 BMP5P22003 454 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 XCR1P46094 333 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 GABRA2P47869 451 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 IRAK1P51617 712 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 ART1P52961 327 aa3.88□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 139.4 ms